Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014668.1

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

1758 .. 5833

Gene Structure 4076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014668.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1551 bp

atgtacaagctttttcgacacatggtgggacatgttcataaggatgagcttttcatggcaacgtgctcttccatttctcatccaccattccatgcacttgtgaagaaattgtctctctttttacctatggttgctatccagtcattacaagcacttttggctgatatattgagagaagatgcacagtttatttttggaattatgagggttgtgcacatcatttttcaagatggatggttgttgattcatggacaagagcgaggtcttgccaagagcactataattgcagggtattgtcaagcaggttatgtggaaaaagcttttgagtatttgtggtggatgagaatggatgtaccaaacccaaatgagtatgcttttactcgtgtaccaagtgtttgtggaaccatggcgatgcttgctcaaggaaagcaattgcatgctcatgtgctaactgttgttctagattgtgaagctatggtacaaagtgccttggtcaatttgcacttgaaatgtggaagttcacaagaagctgcaaaaatctttgatgtgacaaaagttgatgatcacctatttgacttatacataattttcattgagcctctatttgcttgctacttgagatacatagataagcatctcagccatggaagatatgaagatgtggaggtatcagagaagtggtttctggatgtgatgaatatgaatttggagaccatggttggaaaaattaaatgtggtggggaaaagaggctgcatatggatctctttaaaattcacagggggccacttgagaaatgtttggggtatgctctacctattttggatgcgatttgtttatgtgcccagaagcttttcttggttgattgggcttttgcagatgtaccaatatcttggaaggatgtggaaaccaagttgtttgctctttacttccctaacttcatgattgcattcatcgaatttggcttcgtggcaattgatgttggagctcttgcattggtgtgtgttcatctatgtgcactactccatgctcggcaagttactacagatgatggatacttgcaattggatgataaattgggctgtgatcttatgactatggataatgagagcgagttggttatgtatactggatggattcttggtccttctcccaacttcataatgccttctgctagaatgcttggtaccccattttctcccacaccaatgcttgctacttcattttctcccacaccacttcggctactgtcgaaggctcctgctccttcccttcagcctcctccacacacccccaacccccatgcccatggttctctaatgtttgggtttatcctgctagtttatatttccagcgcattattatattgggtatttctgctttattctgacctttttgcaccgcctctgccctcccgccccagccgggttcctctgctgggattctctgctgctctcaccaaaacttgctcggcagccggcatttccaaaaaaggtcagaataccagaatacccaatacaataatgcgctggaaatataaactagcaggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

516

Amino Acids

58.0

Weight (kDa)

7.03

Isoelectric Point (pI)

35.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	293
Acc65I	GGTACC	1 cut(s)	1184
AccB1I	GGYRCC	1 cut(s)	1184
AccI	GTMKAC	1 cut(s)	1124
AciI	CCGC	2 cut(s)	1400, 1414
AclWI	GGATC	1 cut(s)	768
AcsI	RAATTY	3 cut(s)	703, 771, 956
AcuI	CTGAAG	1 cut(s)	1256
AdeI	CACNNNGTG	1 cut(s)	25
AfaI	GTAC	6 cut(s)	5, 354, 387, 480, 882, 1186
AfiI	CCNNNNNNNGG	2 cut(s)	1423, 1436
AflIII	ACRYGT	1 cut(s)	31
AgsI	TTSAA	2 cut(s)	227, 508
AjuI	GAANNNNNNNTTGG	4 cut(s)	689, 721, 839, 871
AluBI	AGCT	7 cut(s)	10, 49, 320, 473, 530, 850, 986
AluI	AGCT	7 cut(s)	10, 49, 320, 473, 530, 850, 986
Alw21I	GWGCWC	5 cut(s)	68, 216, 278, 988, 1018
Alw26I	GTCTC	2 cut(s)	117, 704
Alw44I	GTGCAC	2 cut(s)	212, 1014
AlwI	GGATC	1 cut(s)	768
AoxI	GGCC	1 cut(s)	782
ApaLI	GTGCAC	2 cut(s)	212, 1014
ApeKI	GCWGC	4 cut(s)	530, 751, 1448, 1472
ApoI	RAATTY	3 cut(s)	703, 771, 956
Asp700I	GAANNNNTTC	1 cut(s)	851
Asp718I	GGTACC	1 cut(s)	1184
AspLEI	GCGC	2 cut(s)	1355, 1527
AspS9I	GGNCC	2 cut(s)	782, 1142
AsuC2I	CCSGG	1 cut(s)	1424
AsuHPI	GGTGA	2 cut(s)	557, 1447
AvaII	GGWCC	1 cut(s)	1142
BaeGI	GKGCMC	3 cut(s)	216, 844, 1018
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	1 cut(s)	1184
BanII	GRGCYC	1 cut(s)	988
BarI	GAAGNNNNNNTAC	2 cut(s)	462, 494
BauI	CACGAG	1 cut(s)	381
Bbv12I	GWGCWC	5 cut(s)	68, 216, 278, 988, 1018
BbvI	GCAGC	4 cut(s)	517, 738, 1435, 1484
BccI	CCATC	4 cut(s)	224, 228, 1043, 1125
BciVI	GTATCC	1 cut(s)	1046
BclI	TGATCA	1 cut(s)	562
BcnI	CCSGG	1 cut(s)	1424
BcoDI	GTCTC	2 cut(s)	117, 704
BfaI	CTAG	4 cut(s)	461, 1173, 1337, 1541
BfmI	CTRYAG	1 cut(s)	1041
BfuAI	ACCTGC	1 cut(s)	293
BfuI	GTATCC	1 cut(s)	1046
BisI	GCNGC	4 cut(s)	531, 752, 1449, 1473
BlsI	GCNGC	4 cut(s)	532, 753, 1450, 1474
Bme1390I	CCNGG	1 cut(s)	1424
Bme18I	GGWCC	1 cut(s)	1142
BmgT120I	GGNCC	2 cut(s)	782, 1142
BmiI	GGNNCC	5 cut(s)	403, 783, 1186, 1257, 1428
BmrFI	CCNGG	1 cut(s)	1424
BmsI	GCATC	4 cut(s)	169, 402, 643, 814
BpuEI	CTTGAG	3 cut(s)	405, 637, 809
BpuMI	CCSGG	1 cut(s)	1424
BsaBI	GATNNNNATC	1 cut(s)	633
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	5 cut(s)	405, 489, 643, 714, 1306
Bsc4I	CCNNNNNNNGG	2 cut(s)	1423, 1436
Bse118I	RCCGGY	1 cut(s)	1475
Bse1I	ACTGG	2 cut(s)	139, 1132
Bse8I	GATNNNNATC	1 cut(s)	633
BseDI	CCNNGG	5 cut(s)	405, 489, 643, 714, 1306
BseJI	GATNNNNATC	1 cut(s)	633
BseLI	CCNNNNNNNGG	2 cut(s)	1423, 1436
BseMII	CTCAG	1 cut(s)	652
BseNI	ACTGG	2 cut(s)	139, 1132
BseRI	GAGGAG	1 cut(s)	1269
BseSI	GKGCMC	3 cut(s)	216, 844, 1018
BseXI	GCAGC	4 cut(s)	517, 738, 1435, 1484
BseYI	CCCAGC	2 cut(s)	1418, 1435
BshFI	GGCC	1 cut(s)	784
BshNI	GGYRCC	1 cut(s)	1184
BsiHKAI	GWGCWC	5 cut(s)	68, 216, 278, 988, 1018
BsiSI	CCGG	2 cut(s)	1423, 1476
BslFI	GGGAC	1 cut(s)	42
BslI	CCNNNNNNNGG	2 cut(s)	1423, 1436
BsmAI	GTCTC	2 cut(s)	117, 704
BsmFI	GGGAC	1 cut(s)	42
BsmI	GAATGC	2 cut(s)	947, 1182
BsnI	GGCC	1 cut(s)	784
Bso31I	GGTCTC	1 cut(s)	704
Bsp1286I	GDGCHC	6 cut(s)	68, 216, 278, 844, 988, 1018
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	562, 760, 1084
Bsp19I	CCATGG	4 cut(s)	405, 643, 714, 1306
BspACI	CCGC	2 cut(s)	1400, 1414
BspANI	GGCC	1 cut(s)	784
BspCNI	CTCAG	1 cut(s)	651
BspHI	TCATGA	1 cut(s)	939
BspLI	GGNNCC	5 cut(s)	403, 783, 1186, 1257, 1428
BspMI	ACCTGC	1 cut(s)	293
BspPI	GGATC	1 cut(s)	768
BspQI	GCTCTTC	1 cut(s)	73
BspT107I	GGYRCC	1 cut(s)	1184
BspTNI	GGTCTC	1 cut(s)	704
BsrFI	RCCGGY	1 cut(s)	1475
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	139, 1132
BssAI	RCCGGY	1 cut(s)	1475
BssECI	CCNNGG	5 cut(s)	405, 489, 643, 714, 1306
BssMI	GATC	3 cut(s)	562, 760, 1084
BssNAI	GTATAC	1 cut(s)	1125
BssSI	CACGAG	1 cut(s)	381
BssT1I	CCWWGG	5 cut(s)	405, 489, 643, 714, 1306
Bst1107I	GTATAC	1 cut(s)	1125
Bst2BI	CACGAG	1 cut(s)	381
Bst4CI	ACNGT	3 cut(s)	186, 454, 1248
Bst6I	CTCTTC	1 cut(s)	73
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	5 cut(s)	417, 438, 610, 1212, 1477
BstDEI	CTNAG	1 cut(s)	638
BstDSI	CCRYGG	4 cut(s)	405, 643, 714, 1306
BstHHI	GCGC	2 cut(s)	1355, 1527
BstKTI	GATC	3 cut(s)	565, 763, 1087
BstMAI	GTCTC	2 cut(s)	117, 704
BstMBI	GATC	3 cut(s)	562, 760, 1084
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 416
BstNSI	RCATGY	2 cut(s)	35, 440
BstSCI	CCNGG	1 cut(s)	1422
BstSFI	CTRYAG	1 cut(s)	1041
BstSLI	GKGCMC	3 cut(s)	216, 844, 1018
BstV1I	GCAGC	4 cut(s)	517, 738, 1435, 1484
BstX2I	RGATCY	1 cut(s)	760
BstXI	CCANNNNNNTGG	2 cut(s)	891, 1307
BstYI	RGATCY	1 cut(s)	760
BstZ17I	GTATAC	1 cut(s)	1125
BsuI	GTATCC	1 cut(s)	1046
BsuRI	GGCC	1 cut(s)	784
BtgI	CCRYGG	4 cut(s)	405, 643, 714, 1306
BtgZI	GCGATG	1 cut(s)	425
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	5 cut(s)	417, 438, 610, 1212, 1477
CciI	TCATGA	1 cut(s)	939
CfoI	GCGC	2 cut(s)	1355, 1527
Cfr10I	RCCGGY	1 cut(s)	1475
Cfr13I	GGNCC	2 cut(s)	782, 1142
Csp6I	GTAC	6 cut(s)	4, 353, 386, 479, 881, 1185
CviQI	GTAC	6 cut(s)	4, 353, 386, 479, 881, 1185
DdeI	CTNAG	1 cut(s)	638
DpnI	GATC	3 cut(s)	564, 762, 1086
DpnII	GATC	3 cut(s)	562, 760, 1084
DraI	TTTAAA	1 cut(s)	769
DraIII	CACNNNGTG	1 cut(s)	25
Eam1104I	CTCTTC	1 cut(s)	73
EarI	CTCTTC	1 cut(s)	73
Ecl136II	GAGCTC	1 cut(s)	986
Eco130I	CCWWGG	5 cut(s)	405, 489, 643, 714, 1306
Eco24I	GRGCYC	1 cut(s)	988
Eco31I	GGTCTC	1 cut(s)	704
Eco47I	GGWCC	1 cut(s)	1142
Eco53kI	GAGCTC	1 cut(s)	986
Eco57I	CTGAAG	1 cut(s)	1256
EcoICRI	GAGCTC	1 cut(s)	986
EcoT14I	CCWWGG	5 cut(s)	405, 489, 643, 714, 1306
EcoT38I	GRGCYC	1 cut(s)	988
ErhI	CCWWGG	5 cut(s)	405, 489, 643, 714, 1306
FalI	AAGNNNNNCTT	2 cut(s)	839, 871
FaqI	GGGAC	1 cut(s)	42
FauI	CCCGC	1 cut(s)	1421
FauNDI	CATATG	1 cut(s)	756
FbaI	TGATCA	1 cut(s)	562
FblI	GTMKAC	1 cut(s)	1124
Fnu4HI	GCNGC	4 cut(s)	531, 752, 1449, 1473
FriOI	GRGCYC	1 cut(s)	988
Fsp4HI	GCNGC	4 cut(s)	531, 752, 1449, 1473
FspBI	CTAG	4 cut(s)	461, 1173, 1337, 1541
GlaI	GCGC	2 cut(s)	1354, 1526
GluI	GCNGC	4 cut(s)	531, 752, 1449, 1473
GsaI	CCCAGC	2 cut(s)	1422, 1439
HaeIII	GGCC	1 cut(s)	784
HapII	CCGG	2 cut(s)	1423, 1476
HhaI	GCGC	2 cut(s)	1355, 1527
Hin6I	GCGC	2 cut(s)	1353, 1525
HinP1I	GCGC	2 cut(s)	1353, 1525
HindIII	AAGCTT	3 cut(s)	8, 318, 848
HinfI	GANTC	3 cut(s)	244, 1135, 1440
HpaII	CCGG	2 cut(s)	1423, 1476
HphI	GGTGA	2 cut(s)	557, 1447
Hpy166II	GTNNAC	5 cut(s)	214, 386, 521, 1016, 1125
Hpy188I	TCNGA	3 cut(s)	673, 1387, 1497
Hpy188III	TCNNGA	4 cut(s)	227, 461, 686, 940
Hpy8I	GTNNAC	5 cut(s)	214, 386, 521, 1016, 1125
HpyAV	CCTTC	6 cut(s)	889, 1155, 1176, 1246, 1275, 1280
HpyCH4III	ACNGT	3 cut(s)	186, 454, 1248
HpyCH4IV	ACGT	1 cut(s)	62
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 416
HpyF3I	CTNAG	1 cut(s)	638
HpySE526I	ACGT	1 cut(s)	62
HspAI	GCGC	2 cut(s)	1353, 1525
KpnI	GGTACC	1 cut(s)	1188
KroI	GCCGGC	1 cut(s)	1475
KroNI	GCCGGC	1 cut(s)	1477
Ksp22I	TGATCA	1 cut(s)	562
Kzo9I	GATC	3 cut(s)	562, 760, 1084
LguI	GCTCTTC	1 cut(s)	73
LmnI	GCTCC	3 cut(s)	983, 1261, 1267
Lsp1109I	GCAGC	4 cut(s)	517, 738, 1435, 1484
LweI	GCATC	4 cut(s)	169, 402, 643, 814
MaeI	CTAG	4 cut(s)	461, 1173, 1337, 1541
MaeII	ACGT	1 cut(s)	62
MaeIII	GTNAC	2 cut(s)	547, 1036
MalI	GATC	3 cut(s)	564, 762, 1086
MboI	GATC	3 cut(s)	562, 760, 1084
MboII	GAAGA	5 cut(s)	60, 115, 188, 660, 668
MfeI	CAATTG	3 cut(s)	431, 972, 1061
MflI	RGATCY	1 cut(s)	760
MhlI	GDGCHC	6 cut(s)	68, 216, 278, 844, 988, 1018
MmeI	TCCRAC	2 cut(s)	700, 961
MroNI	GCCGGC	1 cut(s)	1475
MroXI	GAANNNNTTC	1 cut(s)	851
MseI	TTAA	2 cut(s)	729, 768
MslI	CAYNNNNRTG	7 cut(s)	42, 410, 441, 997, 1011, 1205, 1305
MspI	CCGG	2 cut(s)	1423, 1476
MspR9I	CCNGG	1 cut(s)	1424
MunI	CAATTG	3 cut(s)	431, 972, 1061
Mva1269I	GAATGC	2 cut(s)	947, 1182
MwoI	GCNNNNNNNGC	2 cut(s)	158, 416
NaeI	GCCGGC	1 cut(s)	1477
NciI	CCSGG	1 cut(s)	1424
NcoI	CCATGG	4 cut(s)	405, 643, 714, 1306
NdeI	CATATG	1 cut(s)	756
NdeII	GATC	3 cut(s)	562, 760, 1084
NgoMIV	GCCGGC	1 cut(s)	1475
NlaIV	GGNNCC	5 cut(s)	403, 783, 1186, 1257, 1428
NmeAIII	GCCGAG	2 cut(s)	1009, 1448
NmuCI	GTSAC	1 cut(s)	547
NspI	RCATGY	2 cut(s)	35, 440
PaeI	GCATGC	1 cut(s)	440
PagI	TCATGA	1 cut(s)	939
PciI	ACATGT	1 cut(s)	31
PciSI	GCTCTTC	1 cut(s)	73
PctI	GAATGC	2 cut(s)	947, 1182
PdiI	GCCGGC	1 cut(s)	1477
PdmI	GAANNNNTTC	1 cut(s)	851
PfeI	GAWTC	3 cut(s)	244, 1135, 1440
PkrI	GCNGC	4 cut(s)	532, 753, 1450, 1474
PscI	ACATGT	1 cut(s)	31
Psp124BI	GAGCTC	1 cut(s)	988
PspFI	CCCAGC	2 cut(s)	1418, 1435
PspN4I	GGNNCC	5 cut(s)	403, 783, 1186, 1257, 1428
PspPI	GGNCC	2 cut(s)	782, 1142
PsuI	RGATCY	1 cut(s)	760
RsaI	GTAC	6 cut(s)	5, 354, 387, 480, 882, 1186
RsaNI	GTAC	6 cut(s)	4, 353, 386, 479, 881, 1185
RseI	CAYNNNNRTG	7 cut(s)	42, 410, 441, 997, 1011, 1205, 1305
SacI	GAGCTC	1 cut(s)	988
SapI	GCTCTTC	1 cut(s)	73
SaqAI	TTAA	2 cut(s)	729, 768
SatI	GCNGC	4 cut(s)	531, 752, 1449, 1473
Sau3AI	GATC	3 cut(s)	562, 760, 1084
Sau96I	GGNCC	2 cut(s)	782, 1142
ScrFI	CCNGG	1 cut(s)	1424
SduI	GDGCHC	6 cut(s)	68, 216, 278, 844, 988, 1018
SfaNI	GCATC	4 cut(s)	169, 402, 643, 814
SfcI	CTRYAG	1 cut(s)	1041
SinI	GGWCC	1 cut(s)	1142
SmiMI	CAYNNNNRTG	7 cut(s)	42, 410, 441, 997, 1011, 1205, 1305
SmlI	CTYRAG	3 cut(s)	420, 616, 788
SmoI	CTYRAG	3 cut(s)	420, 616, 788
SphI	GCATGC	1 cut(s)	440
SsiI	CCGC	2 cut(s)	1400, 1414
SspMI	CTAG	4 cut(s)	461, 1173, 1337, 1541
SstI	GAGCTC	1 cut(s)	988
StyD4I	CCNGG	1 cut(s)	1422
StyI	CCWWGG	5 cut(s)	405, 489, 643, 714, 1306
TaaI	ACNGT	3 cut(s)	186, 454, 1248
TaiI	ACGT	1 cut(s)	65
TaqI	TCGA	3 cut(s)	16, 954, 1250
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	3 cut(s)	244, 1135, 1440
Tru1I	TTAA	2 cut(s)	729, 768
Tru9I	TTAA	2 cut(s)	729, 768
TseFI	GTSAC	1 cut(s)	547
TseI	GCWGC	4 cut(s)	530, 751, 1448, 1472
Tsp45I	GTSAC	1 cut(s)	547
VneI	GTGCAC	2 cut(s)	212, 1014
VpaK11BI	GGWCC	1 cut(s)	1142
XapI	RAATTY	3 cut(s)	703, 771, 956
XbaI	TCTAGA	1 cut(s)	460
XceI	RCATGY	2 cut(s)	35, 440
XmiI	GTMKAC	1 cut(s)	1124
XmnI	GAANNNNTTC	1 cut(s)	851
XspI	CTAG	4 cut(s)	461, 1173, 1337, 1541

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.