Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001251.1

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

72519 .. 74457

Gene Structure 1939 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001251.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

atgttagttctgtgttggaatgttcgggggcttggctcccctcgaacgttgagggccttgagagagattctcggggaaagaaggccgggcttagttttcattatggaaactagaaaaaatgttgatcaaatggatggtgttttgagaaaattaaatggctcttttgggtgttttactgttaataaaggtagaaacagaggaggtggtttggtcttgctctggaggaatgattggaaggtgaacattatctcttcatcagctagccacatcaatgagaaagtcacaaccaacaataatgtatcatgcagatttactggtttctatggtaacctctgccgtagtttccgacatcactcttgggaattgcatcgtagattggctggggtcagtattaagccttggattgttgggggagagacttcaacgagattatcatggatgaatagaaatcagggaggagatctagatctcttagccaaatgcttgactttcaagaagcggtggacaattgtgatctcagagaagtggagtttgtcggaaccttatcttcttactctctctctgcgatttccagtagttagggttcgtaccctaacaattggtatcagagcccacatcatggggctgaggagcactgggaatccactaccatactcgtcagtaccaccgcgtccacctgacctagatgaatggaagaggaagaggatccaaatctcaagagaagagatagctgcgtggcgtcgtgaccttgagaaaactatggcgtcgttcctgtctgagataataaacgagcagtggcaatttcgattggagcgaccgactcaggtgatggagccttcggtgccgacttcttcagtaccgatcacatctctactagtgactcaacctgtgtcttcggtgatgcacccacagttgtacatgatgctgccgccgccaccaccaccggccatggcagatccctacccttaccagcagcaacaactaccacctcagttgccgaaccagaaacaacaacatttctctttgaataatgattgtggtgctttgagccctgtgtctgttgcaaaattgactggtagtgatgagaagttagatattggggagggagagcattctgataagatggttaaggtgaatagtggggttggtagagagttccatgagcttgagagcatcagtgctaagcaggacaagggaggtttaattgaagataagcagcagcctatcaatggaatgttagaatttcatgccctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_1 RVT_3 zf-RVT

Protein Analysis

418

Amino Acids

47.4

Weight (kDa)

9.69

Isoelectric Point (pI)

54.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	841
AccB7I	CCANNNNNTGG	1 cut(s)	619
AccII	CGCG	1 cut(s)	670
AciI	CCGC	4 cut(s)	499, 668, 929, 932
AclI	AACGTT	1 cut(s)	47
AclWI	GGATC	3 cut(s)	700, 713, 950
AcoI	YGGCCR	1 cut(s)	945
AcsI	RAATTY	1 cut(s)	1241
AcuI	CTGAAG	1 cut(s)	837
AcyI	GRCGYC	2 cut(s)	739, 764
AfaI	GTAC	4 cut(s)	589, 663, 858, 917
AfiI	CCNNNNNNNGG	2 cut(s)	619, 1229
AgsI	TTSAA	4 cut(s)	423, 493, 1027, 1208
AhlI	ACTAGT	1 cut(s)	874
AluBI	AGCT	3 cut(s)	260, 731, 1165
AluI	AGCT	3 cut(s)	260, 731, 1165
Alw21I	GWGCWC	1 cut(s)	635
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	3 cut(s)	700, 713, 950
Ama87I	CYCGRG	1 cut(s)	71
AoxI	GGCC	3 cut(s)	54, 83, 945
ApeKI	GCWGC	5 cut(s)	731, 925, 973, 1216, 1219
ApoI	RAATTY	1 cut(s)	1241
AspS9I	GGNCC	1 cut(s)	54
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	4 cut(s)	250, 838, 910, 1144
AsuNHI	GCTAGC	1 cut(s)	260
AvaI	CYCGRG	1 cut(s)	71
BamHI	GGATCC	1 cut(s)	705
BanI	GGYRCC	1 cut(s)	841
BanII	GRGCYC	2 cut(s)	613, 1052
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	1 cut(s)	635
BbvCI	CCTCAGC	1 cut(s)	626
BbvI	GCAGC	5 cut(s)	718, 912, 985, 1228, 1231
BccI	CCATC	3 cut(s)	128, 823, 1117
BceAI	ACGGC	1 cut(s)	321
BclI	TGATCA	1 cut(s)	124
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	410
BcuI	ACTAGT	1 cut(s)	874
BfaI	CTAG	5 cut(s)	111, 261, 464, 683, 875
BglII	AGATCT	2 cut(s)	460, 466
BisI	GCNGC	7 cut(s)	732, 926, 929, 932, 974, 1217, 1220
BlpI	GCTNAGC	1 cut(s)	1182
BlsI	GCNGC	7 cut(s)	733, 927, 930, 933, 975, 1218, 1221
Bme1390I	CCNGG	1 cut(s)	87
BmeT110I	CYCGRG	1 cut(s)	71
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	5 cut(s)	37, 540, 707, 834, 843
BmrFI	CCNGG	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	645
BmsI	GCATC	4 cut(s)	376, 891, 912, 1182
BmtI	GCTAGC	1 cut(s)	264
BmuI	ACTGGG	1 cut(s)	645
BpiI	GAAGAC	1 cut(s)	885
BplI	GAGNNNNNCTC	2 cut(s)	54, 86
BpmI	CTGGAG	1 cut(s)	241
Bpu10I	CCTNAGC	1 cut(s)	626
Bpu1102I	GCTNAGC	1 cut(s)	1182
BpuEI	CTTGAG	4 cut(s)	79, 700, 770, 1187
BpuMI	CCSGG	1 cut(s)	87
BsaBI	GATNNNNATC	2 cut(s)	465, 710
BsaHI	GRCGYC	2 cut(s)	739, 764
BsaJI	CCNNGG	2 cut(s)	398, 948
Bsc4I	CCNNNNNNNGG	2 cut(s)	619, 1229
Bse118I	RCCGGY	1 cut(s)	943
Bse1I	ACTGG	4 cut(s)	319, 572, 640, 1078
Bse8I	GATNNNNATC	2 cut(s)	465, 710
BseDI	CCNNGG	2 cut(s)	398, 948
BseGI	GGATG	2 cut(s)	139, 444
BseJI	GATNNNNATC	2 cut(s)	465, 710
BseLI	CCNNNNNNNGG	2 cut(s)	619, 1229
BseMII	CTCAG	5 cut(s)	531, 617, 768, 836, 1004
BseNI	ACTGG	4 cut(s)	319, 572, 640, 1078
BseRI	GAGGAG	3 cut(s)	213, 471, 643
BseXI	GCAGC	5 cut(s)	718, 912, 985, 1228, 1231
BseYI	CCCAGC	1 cut(s)	380
Bsh1236I	CGCG	1 cut(s)	670
Bsh1285I	CGRYCG	1 cut(s)	818
BshFI	GGCC	3 cut(s)	56, 85, 947
BshNI	GGYRCC	1 cut(s)	841
BsiEI	CGRYCG	1 cut(s)	818
BsiHKAI	GWGCWC	1 cut(s)	635
BsiHKCI	CYCGRG	1 cut(s)	71
BsiSI	CCGG	2 cut(s)	86, 944
BslI	CCNNNNNNNGG	2 cut(s)	619, 1229
BsmAI	GTCTC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	1111
BsnI	GGCC	3 cut(s)	56, 85, 947
BsoBI	CYCGRG	1 cut(s)	71
Bsp1286I	GDGCHC	3 cut(s)	613, 635, 1052
Bsp1407I	TGTACA	1 cut(s)	915
Bsp143I	GATC	7 cut(s)	124, 460, 466, 513, 705, 861, 955
Bsp1720I	GCTNAGC	1 cut(s)	1182
Bsp19I	CCATGG	1 cut(s)	948
BspACI	CCGC	4 cut(s)	499, 668, 929, 932
BspANI	GGCC	3 cut(s)	56, 85, 947
BspCNI	CTCAG	5 cut(s)	530, 618, 769, 835, 1003
BspFNI	CGCG	1 cut(s)	670
BspLI	GGNNCC	5 cut(s)	37, 540, 707, 834, 843
BspOI	GCTAGC	1 cut(s)	264
BspPI	GGATC	3 cut(s)	700, 713, 950
BspT107I	GGYRCC	1 cut(s)	841
BsrFI	RCCGGY	1 cut(s)	943
BsrGI	TGTACA	1 cut(s)	915
BsrI	ACTGG	4 cut(s)	319, 572, 640, 1078
BssAI	RCCGGY	1 cut(s)	943
BssECI	CCNNGG	2 cut(s)	398, 948
BssMI	GATC	7 cut(s)	124, 460, 466, 513, 705, 861, 955
BssNI	GRCGYC	2 cut(s)	739, 764
BssT1I	CCWWGG	2 cut(s)	398, 948
Bst4CI	ACNGT	2 cut(s)	178, 912
Bst6I	CTCTTC	4 cut(s)	256, 689, 695, 717
BstACI	GRCGYC	2 cut(s)	739, 764
BstAUI	TGTACA	1 cut(s)	915
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	8 cut(s)	91, 472, 517, 626, 777, 822, 990, 1182
BstDSI	CCRYGG	1 cut(s)	948
BstEII	GGTNACC	1 cut(s)	326
BstF5I	GGATG	2 cut(s)	139, 444
BstFNI	CGCG	1 cut(s)	670
BstKTI	GATC	7 cut(s)	127, 463, 469, 516, 708, 864, 958
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	7 cut(s)	124, 460, 466, 513, 705, 861, 955
BstMCI	CGRYCG	1 cut(s)	818
BstMWI	GCNNNNNNNGC	2 cut(s)	841, 931
BstPI	GGTNACC	1 cut(s)	326
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	1 cut(s)	670
BstV1I	GCAGC	5 cut(s)	718, 912, 985, 1228, 1231
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	4 cut(s)	460, 466, 705, 955
BstYI	RGATCY	4 cut(s)	460, 466, 705, 955
BsuRI	GGCC	3 cut(s)	56, 85, 947
BtgI	CCRYGG	1 cut(s)	948
BtsCI	GGATG	2 cut(s)	139, 444
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	3 cut(s)	633, 800, 1183
Cac8I	GCNNGC	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	943
Cfr13I	GGNCC	1 cut(s)	54
CseI	GACGC	3 cut(s)	659, 728, 753
Csp6I	GTAC	4 cut(s)	588, 662, 857, 916
CspCI	CAANNNNNGTGG	2 cut(s)	975, 1010
CviAII	CATG	7 cut(s)	303, 435, 619, 919, 949, 1160, 1247
CviQI	GTAC	4 cut(s)	588, 662, 857, 916
DdeI	CTNAG	8 cut(s)	91, 472, 517, 626, 777, 822, 990, 1182
DpnI	GATC	7 cut(s)	126, 462, 468, 515, 707, 863, 957
DpnII	GATC	7 cut(s)	124, 460, 466, 513, 705, 861, 955
EaeI	YGGCCR	1 cut(s)	945
Eam1104I	CTCTTC	4 cut(s)	256, 689, 695, 717
EarI	CTCTTC	4 cut(s)	256, 689, 695, 717
Eco130I	CCWWGG	2 cut(s)	398, 948
Eco24I	GRGCYC	2 cut(s)	613, 1052
Eco57I	CTGAAG	1 cut(s)	837
Eco88I	CYCGRG	1 cut(s)	71
Eco91I	GGTNACC	1 cut(s)	326
EcoO109I	RGGNCCY	1 cut(s)	54
EcoO65I	GGTNACC	1 cut(s)	326
EcoT14I	CCWWGG	2 cut(s)	398, 948
EcoT38I	GRGCYC	2 cut(s)	613, 1052
ErhI	CCWWGG	2 cut(s)	398, 948
FaeI	CATG	7 cut(s)	306, 438, 622, 922, 952, 1163, 1250
FatI	CATG	7 cut(s)	302, 434, 618, 918, 948, 1159, 1246
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	7 cut(s)	732, 926, 929, 932, 974, 1217, 1220
FokI	GGATG	2 cut(s)	146, 451
FriOI	GRGCYC	2 cut(s)	613, 1052
Fsp4HI	GCNGC	7 cut(s)	732, 926, 929, 932, 974, 1217, 1220
FspBI	CTAG	5 cut(s)	111, 261, 464, 683, 875
GluI	GCNGC	7 cut(s)	732, 926, 929, 932, 974, 1217, 1220
GsaI	CCCAGC	1 cut(s)	384
GsuI	CTGGAG	1 cut(s)	241
HaeIII	GGCC	3 cut(s)	56, 85, 947
HapII	CCGG	2 cut(s)	86, 944
HgaI	GACGC	3 cut(s)	659, 728, 753
Hin1I	GRCGYC	2 cut(s)	739, 764
Hin1II	CATG	7 cut(s)	306, 438, 622, 922, 952, 1163, 1250
HinfI	GANTC	4 cut(s)	67, 640, 820, 880
HpaII	CCGG	2 cut(s)	86, 944
HphI	GGTGA	4 cut(s)	250, 838, 910, 1144
Hpy166II	GTNNAC	3 cut(s)	241, 504, 674
Hpy188I	TCNGA	6 cut(s)	347, 520, 538, 608, 778, 1117
Hpy188III	TCNNGA	5 cut(s)	220, 464, 493, 717, 743
Hpy8I	GTNNAC	3 cut(s)	241, 504, 674
Hpy99I	CGWCG	2 cut(s)	744, 769
HpyAV	CCTTC	3 cut(s)	75, 229, 846
HpyCH4III	ACNGT	2 cut(s)	178, 912
HpyCH4IV	ACGT	1 cut(s)	47
HpyCH4V	TGCA	4 cut(s)	306, 367, 904, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	841, 931
HpyF3I	CTNAG	8 cut(s)	91, 472, 517, 626, 777, 822, 990, 1182
HpySE526I	ACGT	1 cut(s)	47
Hsp92I	GRCGYC	2 cut(s)	739, 764
Hsp92II	CATG	7 cut(s)	306, 438, 622, 922, 952, 1163, 1250
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	7 cut(s)	124, 460, 466, 513, 705, 861, 955
LmnI	GCTCC	4 cut(s)	41, 630, 811, 832
Lsp1109I	GCAGC	5 cut(s)	718, 912, 985, 1228, 1231
LweI	GCATC	4 cut(s)	376, 891, 912, 1182
MaeI	CTAG	5 cut(s)	111, 261, 464, 683, 875
MaeII	ACGT	1 cut(s)	47
MaeIII	GTNAC	4 cut(s)	280, 326, 743, 877
MalI	GATC	7 cut(s)	126, 462, 468, 515, 707, 863, 957
MboI	GATC	7 cut(s)	124, 460, 466, 513, 705, 861, 955
MboII	GAAGA	8 cut(s)	243, 539, 706, 712, 734, 843, 885, 1220
MfeI	CAATTG	2 cut(s)	507, 597
MflI	RGATCY	4 cut(s)	460, 466, 705, 955
MhlI	GDGCHC	3 cut(s)	613, 635, 1052
MluCI	AATT	8 cut(s)	149, 362, 507, 597, 800, 1067, 1203, 1241
MlyI	GAGTC	2 cut(s)	814, 874
MmeI	TCCRAC	2 cut(s)	370, 516
MseI	TTAA	5 cut(s)	152, 180, 393, 1128, 1202
MslI	CAYNNNNRTG	1 cut(s)	270
MspI	CCGG	2 cut(s)	86, 944
MspR9I	CCNGG	1 cut(s)	87
MunI	CAATTG	2 cut(s)	507, 597
Mva1269I	GAATGC	1 cut(s)	1111
MvnI	CGCG	1 cut(s)	670
MwoI	GCNNNNNNNGC	2 cut(s)	841, 931
NciI	CCSGG	1 cut(s)	87
NcoI	CCATGG	1 cut(s)	948
NdeII	GATC	7 cut(s)	124, 460, 466, 513, 705, 861, 955
NheI	GCTAGC	1 cut(s)	260
NlaIII	CATG	7 cut(s)	306, 438, 622, 922, 952, 1163, 1250
NlaIV	GGNNCC	5 cut(s)	37, 540, 707, 834, 843
NmuCI	GTSAC	3 cut(s)	280, 743, 877
PcsI	WCGNNNNNNNCGW	1 cut(s)	811
PctI	GAATGC	1 cut(s)	1111
PfeI	GAWTC	2 cut(s)	67, 640
PflMI	CCANNNNNTGG	1 cut(s)	619
PkrI	GCNGC	7 cut(s)	733, 927, 930, 933, 975, 1218, 1221
PleI	GAGTC	2 cut(s)	814, 874
PpsI	GAGTC	2 cut(s)	814, 874
Psp1406I	AACGTT	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	326
PspFI	CCCAGC	1 cut(s)	380
PspN4I	GGNNCC	5 cut(s)	37, 540, 707, 834, 843
PspPI	GGNCC	1 cut(s)	54
PsrI	GAACNNNNNNTAC	2 cut(s)	567, 599
PsuI	RGATCY	4 cut(s)	460, 466, 705, 955
RsaI	GTAC	4 cut(s)	589, 663, 858, 917
RsaNI	GTAC	4 cut(s)	588, 662, 857, 916
RseI	CAYNNNNRTG	1 cut(s)	270
SaqAI	TTAA	5 cut(s)	152, 180, 393, 1128, 1202
SatI	GCNGC	7 cut(s)	732, 926, 929, 932, 974, 1217, 1220
Sau3AI	GATC	7 cut(s)	124, 460, 466, 513, 705, 861, 955
Sau96I	GGNCC	1 cut(s)	54
SchI	GAGTC	2 cut(s)	814, 874
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	3 cut(s)	613, 635, 1052
SfaNI	GCATC	4 cut(s)	376, 891, 912, 1182
SmiMI	CAYNNNNRTG	1 cut(s)	270
SmlI	CTYRAG	4 cut(s)	58, 715, 749, 1166
SmoI	CTYRAG	4 cut(s)	58, 715, 749, 1166
SpeI	ACTAGT	1 cut(s)	874
Sse9I	AATT	8 cut(s)	149, 362, 507, 597, 800, 1067, 1203, 1241
SsiI	CCGC	4 cut(s)	499, 668, 929, 932
SspMI	CTAG	5 cut(s)	111, 261, 464, 683, 875
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	2 cut(s)	398, 948
TaaI	ACNGT	2 cut(s)	178, 912
TaiI	ACGT	1 cut(s)	50
TaqI	TCGA	2 cut(s)	43, 805
TaqII	GACCGA	1 cut(s)	832
TasI	AATT	8 cut(s)	149, 362, 507, 597, 800, 1067, 1203, 1241
TatI	WGTACW	1 cut(s)	915
TauI	GCSGC	2 cut(s)	931, 934
TfiI	GAWTC	2 cut(s)	67, 640
Tru1I	TTAA	5 cut(s)	152, 180, 393, 1128, 1202
Tru9I	TTAA	5 cut(s)	152, 180, 393, 1128, 1202
TscAI	CASTG	3 cut(s)	640, 800, 1183
TseFI	GTSAC	3 cut(s)	280, 743, 877
TseI	GCWGC	5 cut(s)	731, 925, 973, 1216, 1219
Tsp45I	GTSAC	3 cut(s)	280, 743, 877
TspDTI	ATGAA	5 cut(s)	88, 243, 455, 702, 1235
TspRI	CASTG	3 cut(s)	640, 800, 1183
Van91I	CCANNNNNTGG	1 cut(s)	619
XapI	RAATTY	1 cut(s)	1241
XbaI	TCTAGA	1 cut(s)	463
XspI	CTAG	5 cut(s)	111, 261, 464, 683, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.