Rh7CG111700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005168
Physical Location & Seq
Forward (+)
8633280 .. 8634232
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG111700.1

Sequence Viewer

Length: 588 bp
ATGCCTTCTGCTAGAATGCTTGATACCCCATTTTCTCCCACACCAATGCTTGCTACTTCATTTTCTCCCACACCACCAATGCTTGCTACTTCATTTTCTCCCACACCACTTCGGCTGCTGTCGAAGGCTCCTGCTCCTTCCCCTCAGCCTCCTCCACAGACCCCCAGCCCCCATCCTCCTGGTTCTCTGGTGTTTGGGTTTATCCTGCTAACTTATATCGGCAGCGCAATATTCTATTGGTTATTCTGCTTTGTTCTGATTTTGGTAAGGGCCGCAGAGGAACCCGGCAGAGGAGCCCCAGCAGGGGAGCCCCAGCAGAGGAGCCCCAGCAGAGGAGCCCCAGCAGAGCAACCCCAGCCAGCCCCAGGGCGACCAGCAATCATGAGAAACTGGAATGGGCTGGATGATTTTGTTAGCGACATGAACGCGGCGTATGAAACATTGAGAGAGGGAAGCTTCTGGAACTTCATCAGAAAAGTCGATCAGGGAGAGCATTACATGACTAAGATGCATGGGGGCATCGTGTCGCTATCAAGACAGTATGCAACATTTCTCACAGCAGTGGCGAAATCAGAAGTCGGTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

195

Amino Acids

21.24

Weight (kDa)

8.85

Isoelectric Point (pI)

72.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 428
AciI CCGC 2 cut(s) 273, 428
AfiI CCNNNNNNNGG 6 cut(s) 290, 303, 304, 318, 332, 365
AjnI CCWGG 2 cut(s) 178, 364
AleI CACNNNNGTG 1 cut(s) 560
AluBI AGCT 1 cut(s) 456
AluI AGCT 1 cut(s) 456
AoxI GGCC 1 cut(s) 270
ApeKI GCWGC 2 cut(s) 115, 222
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 270
AsuC2I CCSGG 1 cut(s) 285
BanII GRGCYC 4 cut(s) 298, 312, 326, 340
BbvCI CCTCAGC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 102, 234
BccI CCATC 1 cut(s) 180
BciT130I CCWGG 2 cut(s) 180, 366
BcnI CCSGG 1 cut(s) 285
BfaI CTAG 1 cut(s) 12
BisI GCNGC 4 cut(s) 116, 223, 273, 429
BlsI GCNGC 4 cut(s) 117, 224, 274, 430
Bme1390I CCNGG 3 cut(s) 180, 285, 366
BmgT120I GGNCC 1 cut(s) 270
BmiI GGNNCC 6 cut(s) 129, 282, 295, 309, 323, 337
BmrFI CCNGG 3 cut(s) 180, 285, 366
BmsI GCATC 2 cut(s) 498, 528
Bpu10I CCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 364, 365
Bsc4I CCNNNNNNNGG 6 cut(s) 290, 303, 304, 318, 332, 365
Bse1I ACTGG 1 cut(s) 395
BseBI CCWGG 2 cut(s) 180, 366
BseDI CCNNGG 2 cut(s) 364, 365
BseGI GGATG 2 cut(s) 172, 409
BseLI CCNNNNNNNGG 6 cut(s) 290, 303, 304, 318, 332, 365
BseMII CTCAG 1 cut(s) 158
BseNI ACTGG 1 cut(s) 395
BseRI GAGGAG 4 cut(s) 141, 306, 334, 348
BseXI GCAGC 2 cut(s) 102, 234
BseYI CCCAGC 6 cut(s) 164, 298, 312, 326, 340, 354
Bsh1236I CGCG 1 cut(s) 428
BshFI GGCC 1 cut(s) 272
BsiSI CCGG 1 cut(s) 285
BslI CCNNNNNNNGG 6 cut(s) 290, 303, 304, 318, 332, 365
BsmI GAATGC 1 cut(s) 21
BsnI GGCC 1 cut(s) 272
Bsp1286I GDGCHC 4 cut(s) 298, 312, 326, 340
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 2 cut(s) 273, 428
BspANI GGCC 1 cut(s) 272
BspCNI CTCAG 1 cut(s) 157
BspFNI CGCG 1 cut(s) 428
BspHI TCATGA 1 cut(s) 381
BspLI GGNNCC 6 cut(s) 129, 282, 295, 309, 323, 337
BsrI ACTGG 1 cut(s) 395
BssECI CCNNGG 2 cut(s) 364, 365
BssMI GATC 1 cut(s) 481
Bst2UI CCWGG 2 cut(s) 180, 366
Bst4CI ACNGT 1 cut(s) 540
BstC8I GCNNGC 3 cut(s) 51, 84, 360
BstDEI CTNAG 2 cut(s) 144, 504
BstF5I GGATG 2 cut(s) 172, 409
BstFNI CGCG 1 cut(s) 428
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 1 cut(s) 484
BstMBI GATC 1 cut(s) 481
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstNI CCWGG 2 cut(s) 180, 366
BstSCI CCNGG 3 cut(s) 178, 283, 364
BstUI CGCG 1 cut(s) 428
BstV1I GCAGC 2 cut(s) 102, 234
BstXI CCANNNNNNTGG 1 cut(s) 179
BsuRI GGCC 1 cut(s) 272
BtsCI GGATG 2 cut(s) 172, 409
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
Cac8I GCNNGC 3 cut(s) 51, 84, 360
CciI TCATGA 1 cut(s) 381
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 270
CviAII CATG 4 cut(s) 382, 421, 499, 512
DdeI CTNAG 2 cut(s) 144, 504
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
Eco24I GRGCYC 4 cut(s) 298, 312, 326, 340
EcoRII CCWGG 2 cut(s) 178, 364
EcoT22I ATGCAT 1 cut(s) 513
EcoT38I GRGCYC 4 cut(s) 298, 312, 326, 340
FaeI CATG 4 cut(s) 385, 424, 502, 515
FaiI YATR 7 cut(s) 216, 383, 422, 435, 500, 513, 543
FatI CATG 4 cut(s) 381, 420, 498, 511
Fnu4HI GCNGC 4 cut(s) 116, 223, 273, 429
FokI GGATG 2 cut(s) 159, 416
FriOI GRGCYC 4 cut(s) 298, 312, 326, 340
Fsp4HI GCNGC 4 cut(s) 116, 223, 273, 429
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 226
GluI GCNGC 4 cut(s) 116, 223, 273, 429
GsaI CCCAGC 6 cut(s) 168, 302, 316, 330, 344, 358
HaeIII GGCC 1 cut(s) 272
HapII CCGG 1 cut(s) 285
HhaI GCGC 1 cut(s) 227
Hin1II CATG 4 cut(s) 385, 424, 502, 515
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HindIII AAGCTT 1 cut(s) 454
HpaII CCGG 1 cut(s) 285
Hpy188I TCNGA 3 cut(s) 258, 473, 574
Hpy188III TCNNGA 3 cut(s) 382, 460, 534
HpyAV CCTTC 3 cut(s) 15, 118, 147
HpyCH4III ACNGT 1 cut(s) 540
HpyCH4V TGCA 2 cut(s) 511, 545
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
HpyF3I CTNAG 2 cut(s) 144, 504
Hsp92II CATG 4 cut(s) 385, 424, 502, 515
HspAI GCGC 1 cut(s) 225
Kzo9I GATC 1 cut(s) 481
LmnI GCTCC 6 cut(s) 133, 139, 293, 307, 321, 335
Lsp1109I GCAGC 2 cut(s) 102, 234
LweI GCATC 2 cut(s) 498, 528
MaeI CTAG 1 cut(s) 12
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MhlI GDGCHC 4 cut(s) 298, 312, 326, 340
MnlI CCTC 9 cut(s) 153, 159, 162, 186, 271, 284, 312, 326, 442
Mph1103I ATGCAT 1 cut(s) 513
MslI CAYNNNNRTG 2 cut(s) 44, 560
MspI CCGG 1 cut(s) 285
MspR9I CCNGG 3 cut(s) 180, 285, 366
Mva1269I GAATGC 1 cut(s) 21
MvaI CCWGG 2 cut(s) 180, 366
MvnI CGCG 1 cut(s) 428
MwoI GCNNNNNNNGC 1 cut(s) 355
NciI CCSGG 1 cut(s) 285
NdeII GATC 1 cut(s) 481
NlaIII CATG 4 cut(s) 385, 424, 502, 515
NlaIV GGNNCC 6 cut(s) 129, 282, 295, 309, 323, 337
NsiI ATGCAT 1 cut(s) 513
OliI CACNNNNGTG 1 cut(s) 560
PagI TCATGA 1 cut(s) 381
PasI CCCWGGG 1 cut(s) 365
PctI GAATGC 1 cut(s) 21
PkrI GCNGC 4 cut(s) 117, 224, 274, 430
Psp6I CCWGG 2 cut(s) 178, 364
PspFI CCCAGC 6 cut(s) 164, 298, 312, 326, 340, 354
PspGI CCWGG 2 cut(s) 178, 364
PspN4I GGNNCC 6 cut(s) 129, 282, 295, 309, 323, 337
PspPI GGNCC 1 cut(s) 270
RseI CAYNNNNRTG 2 cut(s) 44, 560
SatI GCNGC 4 cut(s) 116, 223, 273, 429
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 1 cut(s) 270
ScrFI CCNGG 3 cut(s) 180, 285, 366
SduI GDGCHC 4 cut(s) 298, 312, 326, 340
SetI ASST 1 cut(s) 458
SfaNI GCATC 2 cut(s) 498, 528
SmiMI CAYNNNNRTG 2 cut(s) 44, 560
SsiI CCGC 2 cut(s) 273, 428
SspI AATATT 1 cut(s) 231
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 3 cut(s) 178, 283, 364
TaaI ACNGT 1 cut(s) 540
TaqI TCGA 2 cut(s) 122, 480
TauI GCSGC 2 cut(s) 275, 431
TscAI CASTG 1 cut(s) 567
TseI GCWGC 2 cut(s) 115, 222
TspDTI ATGAA 5 cut(s) 48, 81, 437, 450, 457
TspRI CASTG 1 cut(s) 567
XspI CTAG 1 cut(s) 12
Zsp2I ATGCAT 1 cut(s) 513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.