Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

51229497 .. 51241123

Gene Structure 11627 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00369400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGAAAAAGGAGTCTAAGGAGTTCGCCGGCGAGCTTTTTCGGGCACTTGCCGGAGACGCAATATTAGTGGTGATTCCGTCAACAAGGCACAACTTAGAGAATTCTGGGAGCTTTTCCGGGCACTTGCTCGGAGACGCAATATTAGTGGTGATTCCGTCAACGAGGCACAACTTAGAGAATTCGGGAGCATATTTCGACGAGAGCTTCGACTCTAGGCTCCAAACTTTCTTTGACATATTATTAGTCTCGGTGCTTCGTGAGCAAACCATCCAACATTCGAAACAAGCCGAGGAATATGCAACGGTCATTATGGAAGAGCTTGACCCGGACGTGTTGGCTACATTATGCACCCTAACAACTGGTATCAGAGCTCACATCATGGGGCCGAGGAACGCTGGGAATCCACCACCATGCTTTTCAACACCGTCGCATCCACCTGACCTAGATGAAGTGAGGAGGAAGAGGATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007231 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009605 GO:0009607 GO:0009611 GO:0009620 GO:0009628 GO:0009987 GO:0010941 GO:0012505 GO:0016020 GO:0016174 GO:0016491 GO:0016651 GO:0023052 GO:0033500 GO:0033554 GO:0042592 GO:0043067 GO:0043069 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048523 GO:0048878 GO:0050664 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055114 GO:0060548 GO:0065007 GO:0065008 GO:0071214 GO:0071470 GO:0071944 GO:0072593 GO:0098542 GO:0104004

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

FAD_binding_8 Ferric_reduct NADPH_Ox NAD_binding_6

Protein Analysis

156

Amino Acids

17.29

Weight (kDa)

5.46

Isoelectric Point (pI)

52.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	100, 178
AflIII	ACRYGT	1 cut(s)	330
AgsI	TTSAA	1 cut(s)	420
AjiI	CACGTC	1 cut(s)	331
AluBI	AGCT	5 cut(s)	34, 111, 204, 319, 371
AluI	AGCT	5 cut(s)	34, 111, 204, 319, 371
Alw21I	GWGCWC	1 cut(s)	373
Alw26I	GTCTC	3 cut(s)	48, 126, 250
AoxI	GGCC	1 cut(s)	383
ApoI	RAATTY	2 cut(s)	100, 178
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
AspS9I	GGNCC	1 cut(s)	383
AsuC2I	CCSGG	2 cut(s)	118, 326
AsuHPI	GGTGA	2 cut(s)	82, 160
AsuII	TTCGAA	1 cut(s)	278
BaeGI	GKGCMC	2 cut(s)	46, 123
BanII	GRGCYC	1 cut(s)	373
Bbv12I	GWGCWC	1 cut(s)	373
BccI	CCATC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BcnI	CCSGG	2 cut(s)	118, 326
BcoDI	GTCTC	3 cut(s)	48, 126, 250
BfaI	CTAG	2 cut(s)	213, 443
Bme1390I	CCNGG	2 cut(s)	118, 326
BmgBI	CACGTC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	2 cut(s)	218, 384
BmrFI	CCNGG	2 cut(s)	118, 326
BmsI	GCATC	1 cut(s)	439
Bpu14I	TTCGAA	1 cut(s)	278
BpuMI	CCSGG	2 cut(s)	118, 326
BsaJI	CCNNGG	2 cut(s)	288, 386
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	364
BseDI	CCNNGG	2 cut(s)	288, 386
BseGI	GGATG	2 cut(s)	267, 430
BseNI	ACTGG	1 cut(s)	364
BseRI	GAGGAG	1 cut(s)	469
BseSI	GKGCMC	2 cut(s)	46, 123
BseYI	CCCAGC	1 cut(s)	395
BshFI	GGCC	1 cut(s)	385
BsiHKAI	GWGCWC	1 cut(s)	373
BsiSI	CCGG	4 cut(s)	27, 51, 117, 326
BsmAI	GTCTC	3 cut(s)	48, 126, 250
BsmBI	CGTCTC	2 cut(s)	48, 126
BsnI	GGCC	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	278
Bsp1286I	GDGCHC	3 cut(s)	46, 123, 373
Bsp143I	GATC	1 cut(s)	465
BspANI	GGCC	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	218, 384
BspQI	GCTCTTC	1 cut(s)	309
BspT104I	TTCGAA	1 cut(s)	278
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	364
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	288, 386
BssMI	GATC	1 cut(s)	465
Bst4CI	ACNGT	2 cut(s)	304, 426
Bst6I	CTCTTC	2 cut(s)	309, 455
BstBI	TTCGAA	1 cut(s)	278
BstC8I	GCNNGC	2 cut(s)	28, 32
BstDEI	CTNAG	3 cut(s)	15, 94, 172
BstF5I	GGATG	2 cut(s)	267, 430
BstKTI	GATC	1 cut(s)	468
BstMAI	GTCTC	3 cut(s)	48, 126, 250
BstMBI	GATC	1 cut(s)	465
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 259
BstSCI	CCNGG	2 cut(s)	116, 324
BstSLI	GKGCMC	2 cut(s)	46, 123
BstX2I	RGATCY	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	465
BsuRI	GGCC	1 cut(s)	385
BtrI	CACGTC	1 cut(s)	331
BtsCI	GGATG	2 cut(s)	267, 430
Cac8I	GCNNGC	2 cut(s)	28, 32
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	383
CseI	GACGC	2 cut(s)	65, 143
CspCI	CAANNNNNGTGG	4 cut(s)	48, 83, 126, 161
CviAII	CATG	2 cut(s)	379, 411
CviJI	RGCY	9 cut(s)	34, 111, 204, 217, 287, 319, 338, 371, 385
CviKI_1	RGCY	9 cut(s)	34, 111, 204, 217, 287, 319, 338, 371, 385
DdeI	CTNAG	3 cut(s)	15, 94, 172
DpnI	GATC	1 cut(s)	467
DpnII	GATC	1 cut(s)	465
Eam1104I	CTCTTC	2 cut(s)	309, 455
EarI	CTCTTC	2 cut(s)	309, 455
Ecl136II	GAGCTC	1 cut(s)	371
Eco24I	GRGCYC	1 cut(s)	373
Eco53kI	GAGCTC	1 cut(s)	371
EcoICRI	GAGCTC	1 cut(s)	371
EcoRI	GAATTC	2 cut(s)	100, 178
EcoT38I	GRGCYC	1 cut(s)	373
Esp3I	CGTCTC	2 cut(s)	48, 126
FaeI	CATG	2 cut(s)	382, 414
FaiI	YATR	7 cut(s)	190, 236, 297, 311, 346, 380, 412
FatI	CATG	2 cut(s)	378, 410
FokI	GGATG	2 cut(s)	254, 417
FriOI	GRGCYC	1 cut(s)	373
FspBI	CTAG	2 cut(s)	213, 443
GsaI	CCCAGC	1 cut(s)	399
HaeIII	GGCC	1 cut(s)	385
HapII	CCGG	4 cut(s)	27, 51, 117, 326
HgaI	GACGC	2 cut(s)	65, 143
Hin1II	CATG	2 cut(s)	382, 414
HincII	GTYRAC	2 cut(s)	81, 159
HindII	GTYRAC	2 cut(s)	81, 159
HinfI	GANTC	5 cut(s)	11, 73, 151, 209, 400
HpaII	CCGG	4 cut(s)	27, 51, 117, 326
HphI	GGTGA	2 cut(s)	82, 160
Hpy166II	GTNNAC	2 cut(s)	81, 159
Hpy188I	TCNGA	2 cut(s)	131, 368
Hpy188III	TCNNGA	2 cut(s)	183, 257
Hpy8I	GTNNAC	2 cut(s)	81, 159
Hpy99I	CGWCG	2 cut(s)	200, 430
HpyCH4III	ACNGT	2 cut(s)	304, 426
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	2 cut(s)	299, 348
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 259
HpyF3I	CTNAG	3 cut(s)	15, 94, 172
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	2 cut(s)	382, 414
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	465
LguI	GCTCTTC	1 cut(s)	309
LmnI	GCTCC	3 cut(s)	108, 185, 222
LpnPI	CCDG	8 cut(s)	40, 64, 90, 130, 339, 345, 381, 450
LweI	GCATC	1 cut(s)	439
MaeI	CTAG	2 cut(s)	213, 443
MaeII	ACGT	1 cut(s)	330
MalI	GATC	1 cut(s)	467
MboI	GATC	1 cut(s)	465
MboII	GAAGA	1 cut(s)	326
MflI	RGATCY	1 cut(s)	465
MhlI	GDGCHC	3 cut(s)	46, 123, 373
MluCI	AATT	2 cut(s)	100, 178
MlyI	GAGTC	2 cut(s)	20, 203
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	6 cut(s)	156, 283, 381, 447, 450, 456
MreI	CGCCGGCG	1 cut(s)	26
MroNI	GCCGGC	1 cut(s)	26
MslI	CAYNNNNRTG	1 cut(s)	409
MspI	CCGG	4 cut(s)	27, 51, 117, 326
MspR9I	CCNGG	2 cut(s)	118, 326
MwoI	GCNNNNNNNGC	2 cut(s)	56, 259
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	2 cut(s)	118, 326
NdeII	GATC	1 cut(s)	465
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	382, 414
NlaIV	GGNNCC	2 cut(s)	218, 384
NmeAIII	GCCGAG	2 cut(s)	313, 411
NspV	TTCGAA	1 cut(s)	278
PciSI	GCTCTTC	1 cut(s)	309
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	73, 151, 400
PleI	GAGTC	2 cut(s)	19, 203
PpsI	GAGTC	2 cut(s)	19, 203
Psp124BI	GAGCTC	1 cut(s)	373
PspFI	CCCAGC	1 cut(s)	395
PspN4I	GGNNCC	2 cut(s)	218, 384
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	465
RseI	CAYNNNNRTG	1 cut(s)	409
SacI	GAGCTC	1 cut(s)	373
SapI	GCTCTTC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	465
Sau96I	GGNCC	1 cut(s)	383
SchI	GAGTC	2 cut(s)	20, 203
ScrFI	CCNGG	2 cut(s)	118, 326
SduI	GDGCHC	3 cut(s)	46, 123, 373
SetI	ASST	8 cut(s)	36, 113, 206, 321, 333, 373, 439, 444
SfaNI	GCATC	1 cut(s)	439
SfuI	TTCGAA	1 cut(s)	278
SgrAI	CRCCGGYG	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	409
Sse9I	AATT	2 cut(s)	100, 178
SspI	AATATT	2 cut(s)	63, 141
SspMI	CTAG	2 cut(s)	213, 443
SstI	GAGCTC	1 cut(s)	373
StyD4I	CCNGG	2 cut(s)	116, 324
TaaI	ACNGT	2 cut(s)	304, 426
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	3 cut(s)	195, 207, 278
TasI	AATT	2 cut(s)	100, 178
TfiI	GAWTC	3 cut(s)	73, 151, 400
TspDTI	ATGAA	2 cut(s)	17, 462
TspGWI	ACGGA	2 cut(s)	66, 144
XapI	RAATTY	2 cut(s)	100, 178
XspI	CTAG	2 cut(s)	213, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.