Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Reverse (-)

69363688 .. 69366945

Gene Structure 3258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00049180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGGCTTGCATTTTCCTTGTGGAAGGTTTAAAGTTACTAAGCAGACCACCTCTAATTCAGTCCTTATAATTTCTCATGTGATGGAATGTGACAGAGCTGCAAGAGAGATTTATTTGATTTATCCACAGAAGGGATTTGTTTGGGCACTTTGTAATGAAACAGCTTTTGACACCGATGGAAGAAACATGTTGGTTAAAGAGAAGCGATGCTATGACATAGTTATGTTCCCGACAAGTTATACTAAGATGCATGGTTTGAGCATAGGTTATCTTGATGTAATTTCAGCAATTAAGAAGTATTTGAGTGATACAATTGAGCCTTGGTTGGATGGGACTTTTAGTGGGAATGATGATTTCAAGTCTGCATTAGTTATCACATATGATACTGGAGGTTACCCTTATCTAATTGACGTGGCTGTGTACTTCATTTCCTTTGCCAAACTAAATCTATCTGCCACCCAAAGGAGGGATTTTGTTGATAACGTCATTGATTTTCTCAAAAGCAATTCCAAGTTATCTTTTTTGAGAATCACTTCCAACAAAGCCACTTTGGATTCCGGTGATTGGAAATCATTGAATAGCTGTTATGATGCACAAATTTCAGTTTTTGAGTCCAATCTACGGACAAAGTTGGAGGCTGCCAAAGTATTCATGGTTGGATGCGGTGCACTCGAAAGTGAGTTGTTAAAAAATATTCCCTTGATGGGAGTTTCATGTGGCAACCAGGGGAAGCTAACAACCACCGATGATGATGTAATTGAGAAGAGTAACCTCGGTTTGCTTGAGAAAACTCCACCTGAAATGCATGCACTTTTATCCAAGCCAAGTGAAAATACCGCTGCGGGTGCTACATTAGAGGAAGCTCATGGGGCTTGGGCAACGCTAGCTCATGGGTGGCTCGTGGCGAGGCTGGTGGAAGAGCTAGTTATTGTGGCGGGGCTTGTGGGCGACGCCGTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

320

Amino Acids

35.36

Weight (kDa)

5.59

Isoelectric Point (pI)

28.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3444	PF11926	2 - 99	1.3e-16	Domain of unknown function (DUF3444)
ThiF	PF00899	196 - 258	6.4e-10	ThiF family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AciI	CCGC	4 cut(s)	663, 837, 842, 935
AcsI	RAATTY	1 cut(s)	597
AcyI	GRCGYC	1 cut(s)	951
AfaI	GTAC	2 cut(s)	422, 957
AfiI	CCNNNNNNNGG	7 cut(s)	131, 462, 465, 466, 564, 621, 704
AflIII	ACRYGT	1 cut(s)	186
AgsI	TTSAA	2 cut(s)	358, 577
AjiI	CACGTC	1 cut(s)	412
AjnI	CCWGG	1 cut(s)	723
AluBI	AGCT	7 cut(s)	98, 164, 582, 733, 863, 887, 922
AluI	AGCT	7 cut(s)	98, 164, 582, 733, 863, 887, 922
Alw21I	GWGCWC	1 cut(s)	670
Alw44I	GTGCAC	1 cut(s)	666
ApaLI	GTGCAC	1 cut(s)	666
ApeKI	GCWGC	3 cut(s)	98, 638, 839
ApoI	RAATTY	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	532
AsuHPI	GGTGA	1 cut(s)	572
AsuNHI	GCTAGC	1 cut(s)	883
BaeGI	GKGCMC	2 cut(s)	148, 670
BauI	CACGAG	1 cut(s)	899
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	85, 625, 826
BccI	CCATC	4 cut(s)	76, 170, 323, 697
BceAI	ACGGC	1 cut(s)	938
BciT130I	CCWGG	1 cut(s)	725
BfaI	CTAG	2 cut(s)	884, 923
BisI	GCNGC	3 cut(s)	99, 639, 840
BlsI	GCNGC	3 cut(s)	100, 640, 841
Bme1390I	CCNGG	1 cut(s)	725
BmgBI	CACGTC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	725
BmsI	GCATC	4 cut(s)	197, 237, 580, 650
BmtI	GCTAGC	1 cut(s)	887
BpmI	CTGGAG	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	803
BsaHI	GRCGYC	1 cut(s)	951
BsaJI	CCNNGG	3 cut(s)	320, 724, 772
BsaWI	WCCGGW	1 cut(s)	557
Bsc4I	CCNNNNNNNGG	7 cut(s)	131, 462, 465, 466, 564, 621, 704
Bse1I	ACTGG	1 cut(s)	391
BseBI	CCWGG	1 cut(s)	725
BseDI	CCNNGG	3 cut(s)	320, 724, 772
BseGI	GGATG	2 cut(s)	334, 665
BseLI	CCNNNNNNNGG	7 cut(s)	131, 462, 465, 466, 564, 621, 704
BseNI	ACTGG	1 cut(s)	391
BseSI	GKGCMC	2 cut(s)	148, 670
BseXI	GCAGC	3 cut(s)	85, 625, 826
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	1 cut(s)	558
BsiWI	CGTACG	1 cut(s)	955
BslFI	GGGAC	1 cut(s)	346
BslI	CCNNNNNNNGG	7 cut(s)	131, 462, 465, 466, 564, 621, 704
BsmFI	GGGAC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	148, 670
BspACI	CCGC	4 cut(s)	663, 837, 842, 935
BspOI	GCTAGC	1 cut(s)	887
BspQI	GCTCTTC	1 cut(s)	912
BsrI	ACTGG	1 cut(s)	391
BssECI	CCNNGG	3 cut(s)	320, 724, 772
BssNI	GRCGYC	1 cut(s)	951
BssSI	CACGAG	1 cut(s)	899
BssT1I	CCWWGG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	899
Bst2UI	CCWGG	1 cut(s)	725
Bst4CI	ACNGT	1 cut(s)	960
Bst6I	CTCTTC	2 cut(s)	758, 912
BstACI	GRCGYC	1 cut(s)	951
BstC8I	GCNNGC	3 cut(s)	8, 807, 885
BstDEI	CTNAG	2 cut(s)	39, 243
BstEII	GGTNACC	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	334, 665
BstMWI	GCNNNNNNNGC	3 cut(s)	845, 869, 884
BstNI	CCWGG	1 cut(s)	725
BstNSI	RCATGY	2 cut(s)	190, 809
BstPI	GGTNACC	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	723
BstSLI	GKGCMC	2 cut(s)	148, 670
BstV1I	GCAGC	3 cut(s)	85, 625, 826
BtgZI	GCGATG	1 cut(s)	220
BtrI	CACGTC	1 cut(s)	412
BtsCI	GGATG	2 cut(s)	334, 665
Cac8I	GCNNGC	3 cut(s)	8, 807, 885
Csp6I	GTAC	2 cut(s)	421, 956
CviAII	CATG	8 cut(s)	77, 187, 251, 652, 714, 806, 866, 890
CviQI	GTAC	2 cut(s)	421, 956
DdeI	CTNAG	2 cut(s)	39, 243
DraI	TTTAAA	1 cut(s)	31
Eam1104I	CTCTTC	2 cut(s)	758, 912
EarI	CTCTTC	2 cut(s)	758, 912
Eco130I	CCWWGG	1 cut(s)	320
Eco91I	GGTNACC	1 cut(s)	392
EcoO65I	GGTNACC	1 cut(s)	392
EcoRII	CCWGG	1 cut(s)	723
EcoT14I	CCWWGG	1 cut(s)	320
EcoT22I	ATGCAT	2 cut(s)	252, 807
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	8 cut(s)	80, 190, 254, 655, 717, 809, 869, 893
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	8 cut(s)	76, 186, 250, 651, 713, 805, 865, 889
FauI	CCCGC	2 cut(s)	835, 928
FauNDI	CATATG	1 cut(s)	379
Fnu4HI	GCNGC	3 cut(s)	99, 639, 840
FokI	GGATG	2 cut(s)	341, 672
Fsp4HI	GCNGC	3 cut(s)	99, 639, 840
FspBI	CTAG	2 cut(s)	884, 923
GluI	GCNGC	3 cut(s)	99, 639, 840
GsuI	CTGGAG	1 cut(s)	408
HapII	CCGG	1 cut(s)	558
Hin1I	GRCGYC	1 cut(s)	951
Hin1II	CATG	8 cut(s)	80, 190, 254, 655, 717, 809, 869, 893
HinfI	GANTC	3 cut(s)	528, 554, 611
HpaII	CCGG	1 cut(s)	558
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	2 cut(s)	421, 668
Hpy188III	TCNNGA	2 cut(s)	229, 272
Hpy8I	GTNNAC	2 cut(s)	421, 668
Hpy99I	CGWCG	1 cut(s)	953
HpyAV	CCTTC	2 cut(s)	18, 124
HpyCH4III	ACNGT	1 cut(s)	960
HpyCH4IV	ACGT	2 cut(s)	411, 483
HpyCH4V	TGCA	8 cut(s)	10, 101, 250, 365, 593, 668, 805, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	845, 869, 884
HpyF3I	CTNAG	2 cut(s)	39, 243
HpySE526I	ACGT	2 cut(s)	411, 483
Hsp92I	GRCGYC	1 cut(s)	951
Hsp92II	CATG	8 cut(s)	80, 190, 254, 655, 717, 809, 869, 893
LguI	GCTCTTC	1 cut(s)	912
LpnPI	CCDG	6 cut(s)	372, 571, 710, 737, 810, 896
Lsp1109I	GCAGC	3 cut(s)	85, 625, 826
LweI	GCATC	4 cut(s)	197, 237, 580, 650
MaeI	CTAG	2 cut(s)	884, 923
MaeII	ACGT	2 cut(s)	411, 483
MaeIII	GTNAC	4 cut(s)	34, 89, 392, 767
MboII	GAAGA	3 cut(s)	192, 775, 929
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	2 cut(s)	148, 670
MluCI	AATT	9 cut(s)	55, 69, 279, 288, 312, 405, 505, 597, 756
MlyI	GAGTC	1 cut(s)	620
MmeI	TCCRAC	4 cut(s)	306, 561, 612, 637
MnlI	CCTC	7 cut(s)	61, 383, 459, 628, 782, 850, 900
Mph1103I	ATGCAT	2 cut(s)	252, 807
MroXI	GAANNNNTTC	1 cut(s)	532
MseI	TTAA	4 cut(s)	30, 195, 291, 686
MslI	CAYNNNNRTG	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	839
MspI	CCGG	1 cut(s)	558
MspR9I	CCNGG	1 cut(s)	725
MunI	CAATTG	1 cut(s)	312
MvaI	CCWGG	1 cut(s)	725
MwoI	GCNNNNNNNGC	3 cut(s)	845, 869, 884
NdeI	CATATG	1 cut(s)	379
NheI	GCTAGC	1 cut(s)	883
NlaIII	CATG	8 cut(s)	80, 190, 254, 655, 717, 809, 869, 893
NmuCI	GTSAC	1 cut(s)	89
NsiI	ATGCAT	2 cut(s)	252, 807
NspI	RCATGY	2 cut(s)	190, 809
PaeI	GCATGC	1 cut(s)	809
PciI	ACATGT	1 cut(s)	186
PciSI	GCTCTTC	1 cut(s)	912
PdmI	GAANNNNTTC	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	528, 554
Pfl23II	CGTACG	1 cut(s)	955
PkrI	GCNGC	3 cut(s)	100, 640, 841
PleI	GAGTC	1 cut(s)	619
PpsI	GAGTC	1 cut(s)	619
PscI	ACATGT	1 cut(s)	186
PsiI	TTATAA	1 cut(s)	68
Psp6I	CCWGG	1 cut(s)	723
PspEI	GGTNACC	1 cut(s)	392
PspGI	CCWGG	1 cut(s)	723
PspLI	CGTACG	1 cut(s)	955
RsaI	GTAC	2 cut(s)	422, 957
RsaNI	GTAC	2 cut(s)	421, 956
RseI	CAYNNNNRTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	912
SaqAI	TTAA	4 cut(s)	30, 195, 291, 686
SatI	GCNGC	3 cut(s)	99, 639, 840
SchI	GAGTC	1 cut(s)	620
ScrFI	CCNGG	1 cut(s)	725
SduI	GDGCHC	2 cut(s)	148, 670
SfaNI	GCATC	4 cut(s)	197, 237, 580, 650
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	782
SmoI	CTYRAG	1 cut(s)	782
SphI	GCATGC	1 cut(s)	809
Sse9I	AATT	9 cut(s)	55, 69, 279, 288, 312, 405, 505, 597, 756
SsiI	CCGC	4 cut(s)	663, 837, 842, 935
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	2 cut(s)	884, 923
StyD4I	CCNGG	1 cut(s)	723
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	960
TaiI	ACGT	2 cut(s)	414, 486
TaqI	TCGA	1 cut(s)	672
TasI	AATT	9 cut(s)	55, 69, 279, 288, 312, 405, 505, 597, 756
TatI	WGTACW	1 cut(s)	420
TfiI	GAWTC	2 cut(s)	528, 554
Tru1I	TTAA	4 cut(s)	30, 195, 291, 686
Tru9I	TTAA	4 cut(s)	30, 195, 291, 686
TseFI	GTSAC	1 cut(s)	89
TseI	GCWGC	3 cut(s)	98, 638, 839
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	4 cut(s)	171, 415, 640, 702
TspGWI	ACGGA	1 cut(s)	637
VneI	GTGCAC	1 cut(s)	666
XapI	RAATTY	1 cut(s)	597
XceI	RCATGY	2 cut(s)	190, 809
XcmI	CCANNNNNNNNNTGG	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	532
XspI	CTAG	2 cut(s)	884, 923
Zsp2I	ATGCAT	2 cut(s)	252, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.