Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

9249982 .. 9253224

Gene Structure 3243 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ16969

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2688 bp

ATGTTAGAATTTCATGCCTTCCAACTGTTCGATAAAATGCCGAACTCAGAAGGGTTGTGTGATGCAAGAAGGATCGGGTTGTGTAATGCAGGAAGGACCATTATGGCTCCTATGAGCATTAGAGACAAAGAGGGAGGACTCGCTACTCCTTGTGAAGTTGTTGATGCTTCTGACTATTTAGGCTATCCCAAAGCACGTTCTGAGGTCCATTGTACTATCCACCTTGCTGCTGTCAGTGAGATAGCAATATGTTTTGTCAGTTGTAAGCAGGACAATGGTGGTTTCATTGAAGATAAGGAGCTGGAGCAGAGTTTGTCTGGACACACCAGTGGCATTGATTCAGTAAGCTTTGATTCTTCAGAGGTCTTAGTAGTTGCAGGCGCTGCAAGTGGTACAATTAAGCTTTGGGATTTAGAGGAGGCAAAAATTGTTTACACCCTTACTGGTTACAGATCTAATTGTATATTTGTCGACTTCGATCCTTTTGGAGCGTTATTTGCATCTGGCTCCCTGGACACAAATTTAAAAATATGGGATATCAGGAAGAAGGGGTGTATTCACACATACAAAGGCCACACACGAGGAGTCAATGCCATTAGGTTTACCCCAGATGGACGTTGGGCTGTTTCTGGTGGAGAGGACAACACTGTGAAGCTGTGGGATCTGACTGATGGAAAGCTCTTGCATGATTTTAAATGTAATGAGGGCCAGATACAATGCATAGGCTTTCATCCCCATGAGTTCCTGCTCGCAACAGGTTCAGCAGATGGGACAGATTCTTTTGACAACACATTGGTTGATGCAGTTGTTGACTTTCTCAAAAGCAATGCAACGTTATATTTTATGAGGTACACTTCTAATGCACTTCTTTCAAAAGATAATTATGTAGGCTTTTTGACTAATATGTACAAGCTTTTTCGACACATGGTGGGACATGTTCATAAGGATGAGCTTTTCATGGCAACGTGCTTTTCCATTTCTCATCCACCATTCCATGCACTTGTGAAGAAATTGTCTCTCTTTTTACCTATGGTTGCTATCCAGTCATTACAACCACTTTTGGCTGATATATTGAGAGAAGATGCACAGTTTATTTTTGGAATTATGAGGGTTGTGCACATCATTTTCCAAGATGGATGGTTGTTGATTCATGAACAAGAGCGAGGTCTTGCCAAGAGCACTATAATTGCAGGGTATTGTCAAGCAGGTTATGTGGAAAAAGCTTTTGAGTATTTGTGGTGGATGAGAATGGATGTACCAAACCCAAATGAGTATGCTTTTACTCGTGTACCAAGTGTTTGTGGAACCATGGCGATGCTTGCTCAAGGAAAGCAATTGCATGCTCATGTGCTAACTGTTGTTCTAGATTGTGAAGCTATGGTACAAAGTGCCTTGGTCAATTTGCACTTGAAATGTGGAAGTTCACAAGAAGCTGCAAAAATCTTTGATGTGACAAAAGTTGATGATCACCTATTTGACTTATACATAATTTTCATTGAGCCTCTAATTGCTTGCTACTTGAGATACATAGATAAGCATCTCAGCCATGGAAGATATGAAGATGGTCATGCTACAGTTTCATCTACCATCATGAATGAAGAAAAATTTATGTTTGTGACTATTGACAAATTATGCACTGCTTTAGTTTTTAAGTGTTGTCCAATTGGTATAGTGGAGGTATCAGAGAAGTGGTTTCTGGATGTGATGAATATGAATTTGGAGACCATGGTTGGAAAAATTAAATATGGTAGGGAAAAGAGGCTGCATATGGATCTCTTTAAAATTCACAGGGGGCCACTTGAGAAATGTTTGGGGTATACTCTACCTACTTTGGATGCGATCTGTTTATGTGCCCAGAAGCTTTTCTTGGTTGATTGGGCTTTTGCAGATGTACCAATATCTTGGAAGGATGTGGAAACCAAGTTGTTTGCTCTTTACTTCCCTAACTTCATGATTGCATTCATCGAATTTGGCTTCGTGGCAATTGATGTTGGAGCTCTTGCATTGGTTCCTCAAATACACTTTTCAGTACACATGTGGACAAATGAAGCTCTTCTACTTGTCCTGTTGTCTGCAATTATGCACTCCCAGACAATGGAATTCGTAATTTCAAGCATTCTATTGCAGAGTCCCAATAGAGAAGCCTTGAGGGTTTTTTCTAATATGCAAAATTTATATCATCGGCAATCAAATTTTATTTCTCAGGTGTGTGTTCATCTATGTGCACTACTCCATGCTTGGCAAGTTACTACAGATGATGGATACTTGCAATTGGATGATAAATTGGGCTGTGATCTTATGACTATGGATAATGAGAGCGAGTTGGTTATGTATACTGGATGTCAGACTCCACAGATCTGTTGGTCAATAACATATGAGAGCAGGAAAAGCAATAACAATATCAGTGTCAAGACTTGCTCTGTCTCTCTAGTGTCCAATTCATTGAATTTGTATTTAACAATATTGCTGCCATATGGAATTTTTGAGGTGGGAGAAGATTCTGTAAGTGGTATATTTTACTGGCAATTGTTGCTGGACTTGGTAAGAAAAATGTTGCAGATTTGGACATGGGAAAATGGAGGATTTTTGCAGACTCAGATGATTGTTGAGGCAAGGGATTTTCAAAAAAAAGAACAATGTGTTGTCATCAACTGGTCTATAGCTCTTCAAGTTTCAAAGGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

895

Amino Acids

101.1

Weight (kDa)

5.58

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	97 - 258	7.2e-27	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	97 - 191	6.4e-12	WDHD1 first WD40 domain
Beta-prop_WDR5	PF25175	97 - 188	1.3e-17	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	98 - 257	2.9e-32	WDR3 first beta-propeller domain
WD40_MABP1-WDR62_2nd	PF24782	101 - 222	7.7e-09	MABP1/WDR62 second WD40 domain
WD40	PF00400	101 - 137	1.6e-06	WD domain, G-beta repeat
WD40_Gbeta	PF25391	101 - 214	2.6e-15	G protein beta WD-40 repeat protein
Beta-prop_CAF1B_HIR1	PF24105	101 - 188	9.6e-06	CAF1B/HIR1 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	103 - 226	3.9e-14	WDR3 second beta-propeller domain
Beta-prop_THOC3	PF25174	103 - 252	9.7e-32	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	106 - 274	4.4e-22	CDC20/Fizzy WD40 domain
Beta-prop_WDR36-Utp21_2nd	PF25168	106 - 256	4.5e-18	WDR36/Utp21 second beta-propeller domain
Beta-prop_EML_2	PF23414	109 - 206	9.6e-07	Echinoderm microtubule-associated protein second beta-propeller
WDR55	PF24796	111 - 258	1.4e-14	WDR55
Beta-prop_WDR36-Utp21_1st	PF25171	124 - 220	3e-08	WDR36/Utp21 first beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	125 - 210	1.1e-06	WDR90/POC16, second beta-propeller
Beta-prop_TEP1_2nd	PF25047	145 - 241	4.7e-06	TEP-1 second beta-propeller
EIF3I	PF24805	148 - 248	2.2e-08	EIF3I
Beta-prop_WDR5	PF25175	157 - 258	4.4e-23	WDR5 beta-propeller domain
WD40_Gbeta	PF25391	172 - 259	2.5e-11	G protein beta WD-40 repeat protein
Beta-prop_WDR75_1st	PF23869	174 - 231	7.5e-06	WD repeat-containing protein 75 first beta-propeller
ANAPC4_WD40	PF12894	177 - 244	1.8e-06	Anaphase-promoting complex subunit 4 WD40 domain
WD40	PF00400	185 - 221	6.2e-13	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	187 - 258	2.8e-07	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	190 - 258	5e-06	EIF3I
WD40_WDHD1_1st	PF24817	194 - 258	4.6e-06	WDHD1 first WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	213 - 258	6.1e-06	WDR90/POC16, second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1196
AccB7I	CCANNNNNTGG	1 cut(s)	2095
AccI	GTMKAC	3 cut(s)	471, 1817, 2333
AclI	AACGTT	1 cut(s)	833
AclWI	GGATC	4 cut(s)	80, 473, 669, 1779
AcuI	CTGAAG	1 cut(s)	342
AdeI	CACNNNGTG	1 cut(s)	928
AfaI	GTAC	9 cut(s)	214, 394, 851, 908, 1257, 1290, 1383, 1893, 2031
AfiI	CCNNNNNNNGG	1 cut(s)	2095
AflIII	ACRYGT	2 cut(s)	934, 2034
AgsI	TTSAA	8 cut(s)	290, 873, 1411, 2112, 2446, 2624, 2669, 2676
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	4 cut(s)	1700, 1732, 1850, 1882
AleI	CACNNNNGTG	1 cut(s)	327
Alw21I	GWGCWC	4 cut(s)	1119, 1181, 1999, 2227
Alw26I	GTCTC	4 cut(s)	117, 1020, 1715, 2428
Alw44I	GTGCAC	2 cut(s)	1115, 2223
AlwI	GGATC	4 cut(s)	80, 473, 669, 1779
AlwNI	CAGNNNCTG	1 cut(s)	383
AoxI	GGCC	3 cut(s)	571, 706, 1793
ApaLI	GTGCAC	2 cut(s)	1115, 2223
ApeKI	GCWGC	5 cut(s)	227, 383, 1433, 1762, 2467
Asp700I	GAANNNNTTC	2 cut(s)	1862, 2052
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	4 cut(s)	96, 205, 706, 1793
AsuHPI	GGTGA	1 cut(s)	1460
AvaII	GGWCC	2 cut(s)	96, 205
BaeGI	GKGCMC	3 cut(s)	1119, 1855, 2227
BaeI	ACNNNNGTAYC	2 cut(s)	1272, 1305
BanII	GRGCYC	1 cut(s)	1999
BarI	GAAGNNNNNNTAC	4 cut(s)	1365, 1397, 2040, 2072
BauI	CACGAG	2 cut(s)	579, 1284
Bbv12I	GWGCWC	4 cut(s)	1119, 1181, 1999, 2227
BbvI	GCAGC	5 cut(s)	214, 370, 1420, 1749, 2454
BccI	CCATC	8 cut(s)	605, 665, 761, 1127, 1131, 1556, 1595, 2252
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	2255
BclI	TGATCA	1 cut(s)	1465
BcoDI	GTCTC	4 cut(s)	117, 1020, 1715, 2428
BfaI	CTAG	2 cut(s)	1364, 2429
BfmI	CTRYAG	3 cut(s)	1572, 2250, 2658
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	1196
BfuI	GTATCC	1 cut(s)	2255
BglII	AGATCT	2 cut(s)	452, 2355
BisI	GCNGC	5 cut(s)	228, 384, 1434, 1763, 2468
BlsI	GCNGC	5 cut(s)	229, 385, 1435, 1764, 2469
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	2 cut(s)	96, 205
BmgT120I	GGNCC	4 cut(s)	96, 205, 706, 1793
BmiI	GGNNCC	5 cut(s)	108, 508, 1306, 1794, 2010
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	8 cut(s)	52, 154, 509, 790, 1072, 1305, 1546, 1825
BpmI	CTGGAG	1 cut(s)	323
BpuEI	CTTGAG	4 cut(s)	1308, 1540, 1820, 2167
BsaBI	GATNNNNATC	1 cut(s)	1536
BsaI	GGTCTC	1 cut(s)	1715
BsaJI	CCNNGG	5 cut(s)	510, 1308, 1392, 1546, 1725
Bsc4I	CCNNNNNNNGG	1 cut(s)	2095
Bse1I	ACTGG	6 cut(s)	327, 448, 1042, 2341, 2525, 2657
Bse3DI	GCAATG	1 cut(s)	832
Bse8I	GATNNNNATC	1 cut(s)	1536
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	5 cut(s)	510, 1308, 1392, 1546, 1725
BseJI	GATNNNNATC	1 cut(s)	1536
BseLI	CCNNNNNNNGG	1 cut(s)	2095
BseMI	GCAATG	1 cut(s)	832
BseMII	CTCAG	5 cut(s)	60, 192, 1555, 2216, 2609
BseNI	ACTGG	6 cut(s)	327, 448, 1042, 2341, 2525, 2657
BseRI	GAGGAG	2 cut(s)	431, 597
BseSI	GKGCMC	3 cut(s)	1119, 1855, 2227
BseXI	GCAGC	5 cut(s)	214, 370, 1420, 1749, 2454
BshFI	GGCC	3 cut(s)	573, 708, 1795
BsiHKAI	GWGCWC	4 cut(s)	1119, 1181, 1999, 2227
BslFI	GGGAC	3 cut(s)	784, 945, 2115
BslI	CCNNNNNNNGG	1 cut(s)	2095
BsmAI	GTCTC	4 cut(s)	117, 1020, 1715, 2428
BsmFI	GGGAC	3 cut(s)	784, 945, 2115
BsmI	GAATGC	2 cut(s)	1958, 2115
BsnI	GGCC	3 cut(s)	573, 708, 1795
Bso31I	GGTCTC	1 cut(s)	1715
Bsp1286I	GDGCHC	5 cut(s)	1119, 1181, 1855, 1999, 2227
Bsp1407I	TGTACA	1 cut(s)	906
Bsp143I	GATC	9 cut(s)	72, 452, 478, 661, 1465, 1771, 1839, 2293, 2355
Bsp19I	CCATGG	3 cut(s)	1308, 1546, 1725
BspANI	GGCC	3 cut(s)	573, 708, 1795
BspCNI	CTCAG	5 cut(s)	59, 193, 1554, 2215, 2608
BspHI	TCATGA	3 cut(s)	1150, 1590, 1950
BspLI	GGNNCC	5 cut(s)	108, 508, 1306, 1794, 2010
BspMI	ACCTGC	1 cut(s)	1196
BspPI	GGATC	4 cut(s)	80, 473, 669, 1779
BspQI	GCTCTTC	2 cut(s)	2058, 2670
BspTNI	GGTCTC	1 cut(s)	1715
BsrDI	GCAATG	1 cut(s)	832
BsrGI	TGTACA	1 cut(s)	906
BsrI	ACTGG	6 cut(s)	327, 448, 1042, 2341, 2525, 2657
BssECI	CCNNGG	5 cut(s)	510, 1308, 1392, 1546, 1725
BssMI	GATC	9 cut(s)	72, 452, 478, 661, 1465, 1771, 1839, 2293, 2355
BssNAI	GTATAC	2 cut(s)	1818, 2334
BssSI	CACGAG	2 cut(s)	579, 1284
BssT1I	CCWWGG	4 cut(s)	1308, 1392, 1546, 1725
Bst1107I	GTATAC	2 cut(s)	1818, 2334
Bst2BI	CACGAG	2 cut(s)	579, 1284
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	5 cut(s)	27, 649, 1089, 1357, 1576
Bst6I	CTCTTC	2 cut(s)	2058, 2670
BstAPI	GCANNNNNTGC	2 cut(s)	383, 2530
BstAUI	TGTACA	1 cut(s)	906
BstC8I	GCNNGC	5 cut(s)	379, 750, 1320, 1341, 1513
BstDEI	CTNAG	6 cut(s)	46, 201, 367, 1541, 2202, 2595
BstDSI	CCRYGG	3 cut(s)	1308, 1546, 1725
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	9 cut(s)	75, 455, 481, 664, 1468, 1774, 1842, 2296, 2358
BstMAI	GTCTC	4 cut(s)	117, 1020, 1715, 2428
BstMBI	GATC	9 cut(s)	72, 452, 478, 661, 1465, 1771, 1839, 2293, 2355
BstMWI	GCNNNNNNNGC	5 cut(s)	383, 497, 1319, 2388, 2530
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	3 cut(s)	938, 1343, 2038
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	3 cut(s)	1572, 2250, 2658
BstSLI	GKGCMC	3 cut(s)	1119, 1855, 2227
BstV1I	GCAGC	5 cut(s)	214, 370, 1420, 1749, 2454
BstX2I	RGATCY	4 cut(s)	452, 661, 1771, 2355
BstXI	CCANNNNNNTGG	1 cut(s)	1902
BstYI	RGATCY	4 cut(s)	452, 661, 1771, 2355
BstZ17I	GTATAC	2 cut(s)	1818, 2334
BsuI	GTATCC	1 cut(s)	2255
BsuRI	GGCC	3 cut(s)	573, 708, 1795
BtgI	CCRYGG	3 cut(s)	1308, 1546, 1725
BtgZI	GCGATG	1 cut(s)	1328
BtsI	GCAGTG	1 cut(s)	1635
BtsIMutI	CAGTG	5 cut(s)	241, 334, 645, 1635, 2410
BveI	ACCTGC	1 cut(s)	1196
Cac8I	GCNNGC	5 cut(s)	379, 750, 1320, 1341, 1513
CaiI	CAGNNNCTG	1 cut(s)	383
CciI	TCATGA	3 cut(s)	1150, 1590, 1950
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	4 cut(s)	96, 205, 706, 1793
Csp6I	GTAC	9 cut(s)	213, 393, 850, 907, 1256, 1289, 1382, 1892, 2030
CviQI	GTAC	9 cut(s)	213, 393, 850, 907, 1256, 1289, 1382, 1892, 2030
DdeI	CTNAG	6 cut(s)	46, 201, 367, 1541, 2202, 2595
DpnI	GATC	9 cut(s)	74, 454, 480, 663, 1467, 1773, 1841, 2295, 2357
DpnII	GATC	9 cut(s)	72, 452, 478, 661, 1465, 1771, 1839, 2293, 2355
DraI	TTTAAA	3 cut(s)	525, 694, 1780
DraIII	CACNNNGTG	1 cut(s)	928
Eam1104I	CTCTTC	2 cut(s)	2058, 2670
EarI	CTCTTC	2 cut(s)	2058, 2670
Ecl136II	GAGCTC	1 cut(s)	1997
Eco130I	CCWWGG	4 cut(s)	1308, 1392, 1546, 1725
Eco24I	GRGCYC	1 cut(s)	1999
Eco31I	GGTCTC	1 cut(s)	1715
Eco32I	GATATC	1 cut(s)	538
Eco47I	GGWCC	2 cut(s)	96, 205
Eco53kI	GAGCTC	1 cut(s)	1997
Eco57I	CTGAAG	1 cut(s)	342
EcoICRI	GAGCTC	1 cut(s)	1997
EcoRI	GAATTC	1 cut(s)	2099
EcoRII	CCWGG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	538
EcoT14I	CCWWGG	4 cut(s)	1308, 1392, 1546, 1725
EcoT22I	ATGCAT	1 cut(s)	722
EcoT38I	GRGCYC	1 cut(s)	1999
ErhI	CCWWGG	4 cut(s)	1308, 1392, 1546, 1725
FalI	AAGNNNNNCTT	2 cut(s)	1850, 1882
FaqI	GGGAC	3 cut(s)	784, 945, 2115
FauNDI	CATATG	3 cut(s)	1767, 2374, 2473
FbaI	TGATCA	1 cut(s)	1465
FblI	GTMKAC	3 cut(s)	471, 1817, 2333
Fnu4HI	GCNGC	5 cut(s)	228, 384, 1434, 1763, 2468
FriOI	GRGCYC	1 cut(s)	1999
Fsp4HI	GCNGC	5 cut(s)	228, 384, 1434, 1763, 2468
FspBI	CTAG	2 cut(s)	1364, 2429
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	5 cut(s)	228, 384, 1434, 1763, 2468
GsuI	CTGGAG	1 cut(s)	323
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	3 cut(s)	573, 708, 1795
HhaI	GCGC	1 cut(s)	383
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	2 cut(s)	472, 811
HindII	GTYRAC	2 cut(s)	472, 811
HindIII	AAGCTT	5 cut(s)	346, 401, 911, 1221, 1859
HphI	GGTGA	1 cut(s)	1460
Hpy188I	TCNGA	8 cut(s)	49, 172, 202, 361, 666, 1684, 2346, 2598
Hpy188III	TCNNGA	8 cut(s)	318, 541, 1151, 1364, 1591, 1697, 1951, 2410
HpyAV	CCTTC	6 cut(s)	28, 44, 63, 87, 541, 1900
HpyCH4III	ACNGT	5 cut(s)	27, 649, 1089, 1357, 1576
HpyCH4IV	ACGT	4 cut(s)	196, 616, 833, 965
HpyF10VI	GCNNNNNNNGC	5 cut(s)	383, 497, 1319, 2388, 2530
HpyF3I	CTNAG	6 cut(s)	46, 201, 367, 1541, 2202, 2595
HpySE526I	ACGT	4 cut(s)	196, 616, 833, 965
HspAI	GCGC	1 cut(s)	381
Ksp22I	TGATCA	1 cut(s)	1465
Kzo9I	GATC	9 cut(s)	72, 452, 478, 661, 1465, 1771, 1839, 2293, 2355
LguI	GCTCTTC	2 cut(s)	2058, 2670
LmnI	GCTCC	6 cut(s)	112, 298, 304, 488, 512, 1994
Lsp1109I	GCAGC	5 cut(s)	214, 370, 1420, 1749, 2454
LweI	GCATC	8 cut(s)	52, 154, 509, 790, 1072, 1305, 1546, 1825
MaeI	CTAG	2 cut(s)	1364, 2429
MaeII	ACGT	4 cut(s)	196, 616, 833, 965
MaeIII	GTNAC	4 cut(s)	446, 1450, 1615, 2245
MalI	GATC	9 cut(s)	74, 454, 480, 663, 1467, 1773, 1841, 2295, 2357
MboI	GATC	9 cut(s)	72, 452, 478, 661, 1465, 1771, 1839, 2293, 2355
MfeI	CAATTG	5 cut(s)	1334, 1662, 1983, 2270, 2525
MflI	RGATCY	4 cut(s)	452, 661, 1771, 2355
MhlI	GDGCHC	5 cut(s)	1119, 1181, 1855, 1999, 2227
MlyI	GAGTC	5 cut(s)	132, 594, 2137, 2341, 2587
MmeI	TCCRAC	3 cut(s)	46, 1711, 1972
Mph1103I	ATGCAT	1 cut(s)	722
MroXI	GAANNNNTTC	2 cut(s)	1862, 2052
MseI	TTAA	7 cut(s)	399, 524, 693, 1650, 1740, 1779, 2456
MslI	CAYNNNNRTG	6 cut(s)	327, 735, 945, 1313, 1344, 2220
MspR9I	CCNGG	1 cut(s)	512
MunI	CAATTG	5 cut(s)	1334, 1662, 1983, 2270, 2525
Mva1269I	GAATGC	2 cut(s)	1958, 2115
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	5 cut(s)	383, 497, 1319, 2388, 2530
NcoI	CCATGG	3 cut(s)	1308, 1546, 1725
NdeI	CATATG	3 cut(s)	1767, 2374, 2473
NdeII	GATC	9 cut(s)	72, 452, 478, 661, 1465, 1771, 1839, 2293, 2355
NlaIV	GGNNCC	5 cut(s)	108, 508, 1306, 1794, 2010
NmuCI	GTSAC	2 cut(s)	1450, 1615
NsiI	ATGCAT	1 cut(s)	722
NspI	RCATGY	3 cut(s)	938, 1343, 2038
OliI	CACNNNNGTG	1 cut(s)	327
PaeI	GCATGC	1 cut(s)	1343
PagI	TCATGA	3 cut(s)	1150, 1590, 1950
PciI	ACATGT	2 cut(s)	934, 2034
PciSI	GCTCTTC	2 cut(s)	2058, 2670
PctI	GAATGC	2 cut(s)	1958, 2115
PdmI	GAANNNNTTC	2 cut(s)	1862, 2052
PfeI	GAWTC	5 cut(s)	338, 353, 776, 1147, 2498
PflMI	CCANNNNNTGG	1 cut(s)	2095
PkrI	GCNGC	5 cut(s)	229, 385, 1435, 1764, 2469
PleI	GAGTC	5 cut(s)	132, 593, 2136, 2341, 2587
PpsI	GAGTC	5 cut(s)	132, 593, 2136, 2341, 2587
PscI	ACATGT	2 cut(s)	934, 2034
Psp124BI	GAGCTC	1 cut(s)	1999
Psp1406I	AACGTT	1 cut(s)	833
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	5 cut(s)	108, 508, 1306, 1794, 2010
PspPI	GGNCC	4 cut(s)	96, 205, 706, 1793
PstNI	CAGNNNCTG	1 cut(s)	383
PsuI	RGATCY	4 cut(s)	452, 661, 1771, 2355
RsaI	GTAC	9 cut(s)	214, 394, 851, 908, 1257, 1290, 1383, 1893, 2031
RsaNI	GTAC	9 cut(s)	213, 393, 850, 907, 1256, 1289, 1382, 1892, 2030
RseI	CAYNNNNRTG	6 cut(s)	327, 735, 945, 1313, 1344, 2220
SacI	GAGCTC	1 cut(s)	1999
SalI	GTCGAC	1 cut(s)	470
SapI	GCTCTTC	2 cut(s)	2058, 2670
SaqAI	TTAA	7 cut(s)	399, 524, 693, 1650, 1740, 1779, 2456
SatI	GCNGC	5 cut(s)	228, 384, 1434, 1763, 2468
Sau3AI	GATC	9 cut(s)	72, 452, 478, 661, 1465, 1771, 1839, 2293, 2355
Sau96I	GGNCC	4 cut(s)	96, 205, 706, 1793
SchI	GAGTC	5 cut(s)	132, 594, 2137, 2341, 2587
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	5 cut(s)	1119, 1181, 1855, 1999, 2227
SfaNI	GCATC	8 cut(s)	52, 154, 509, 790, 1072, 1305, 1546, 1825
SfcI	CTRYAG	3 cut(s)	1572, 2250, 2658
SinI	GGWCC	2 cut(s)	96, 205
SmiMI	CAYNNNNRTG	6 cut(s)	327, 735, 945, 1313, 1344, 2220
SmlI	CTYRAG	4 cut(s)	1323, 1519, 1799, 2146
SmoI	CTYRAG	4 cut(s)	1323, 1519, 1799, 2146
SphI	GCATGC	1 cut(s)	1343
SspI	AATATT	1 cut(s)	2463
SspMI	CTAG	2 cut(s)	1364, 2429
SstI	GAGCTC	1 cut(s)	1999
StyD4I	CCNGG	1 cut(s)	510
StyI	CCWWGG	4 cut(s)	1308, 1392, 1546, 1725
TaaI	ACNGT	5 cut(s)	27, 649, 1089, 1357, 1576
TaiI	ACGT	4 cut(s)	199, 619, 836, 968
TaqI	TCGA	5 cut(s)	30, 471, 477, 919, 1965
TatI	WGTACW	3 cut(s)	212, 906, 2029
TfiI	GAWTC	5 cut(s)	338, 353, 776, 1147, 2498
Tru1I	TTAA	7 cut(s)	399, 524, 693, 1650, 1740, 1779, 2456
Tru9I	TTAA	7 cut(s)	399, 524, 693, 1650, 1740, 1779, 2456
TscAI	CASTG	5 cut(s)	241, 334, 652, 1642, 2410
TseFI	GTSAC	2 cut(s)	1450, 1615
TseI	GCWGC	5 cut(s)	227, 383, 1433, 1762, 2467
Tsp45I	GTSAC	2 cut(s)	1450, 1615
TspRI	CASTG	5 cut(s)	241, 334, 652, 1642, 2410
Van91I	CCANNNNNTGG	1 cut(s)	2095
VneI	GTGCAC	2 cut(s)	1115, 2223
VpaK11BI	GGWCC	2 cut(s)	96, 205
XbaI	TCTAGA	1 cut(s)	1363
XceI	RCATGY	3 cut(s)	938, 1343, 2038
XcmI	CCANNNNNNNNNTGG	2 cut(s)	615, 2358
XmiI	GTMKAC	3 cut(s)	471, 1817, 2333
XmnI	GAANNNNTTC	2 cut(s)	1862, 2052
XspI	CTAG	2 cut(s)	1364, 2429
Zsp2I	ATGCAT	1 cut(s)	722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.