Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005120.1

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

54126 .. 54872

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005120.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

atgggcgaggtggttcttccagcagtgcaacactgcatcagttggatggctgttttccagcaaactatgaacgattttcataacaatttcatggaggagattcgtcgggaatactgctcaaaatttccaactactgcaacccctacatacagtggtccatggtatgctccagccgatcctacacttccaagcccttggacgggtttaattgatggctcatcttgttcattgtactactggaatcctgaaactcaccagacccagtatgagaggccatgtcaacaagctcctcaatatccaccgaccttcatttcctcagattactccgttcactcaaaccctcaaccatacacctccgataaccaccacggtatcaatcttccatttacccaccctacaaattcccacccttataatgttgcttcgttttaccccaaccctcaccatcaatcacataacccaccagtcaattaccttcacaaggctaccattatctctcaatcacccttgtattccacatatgatagcgttttcggcagctctcctacaaccaagaagctcaaatcgattcgagtgaaccaaataatgttgcttcgttttaccccaaccctcaccatcaatcacataacccaccagtcaattaccttcacaaggctaccattatctctcagtcacccttgtattccacatatgatagcgttttcggcagctctcctacaaccaagaagctcaaatcgattcgagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03040 ko05202 ko05205 map03040 map05202 map05205

Pfam Domains

Protein Families

DEAD Helicase_C WW

Protein Analysis

248

Amino Acids

28.29

Weight (kDa)

7.28

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AclWI	GGATC	1 cut(s)	170
AcsI	RAATTY	2 cut(s)	122, 400
AfaI	GTAC	1 cut(s)	233
AfiI	CCNNNNNNNGG	4 cut(s)	199, 200, 481, 651
AluBI	AGCT	5 cut(s)	287, 540, 559, 710, 729
AluI	AGCT	5 cut(s)	287, 540, 559, 710, 729
AlwI	GGATC	1 cut(s)	170
AoxI	GGCC	1 cut(s)	272
ApeKI	GCWGC	2 cut(s)	537, 707
ApoI	RAATTY	2 cut(s)	122, 400
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	5 cut(s)	245, 434, 495, 604, 665
AvaII	GGWCC	1 cut(s)	155
BaeI	ACNNNNGTAYC	2 cut(s)	355, 388
BbvI	GCAGC	2 cut(s)	549, 719
BccI	CCATC	4 cut(s)	40, 206, 453, 623
BisI	GCNGC	2 cut(s)	538, 708
BlsI	GCNGC	2 cut(s)	539, 709
Bme18I	GGWCC	1 cut(s)	155
BmgT120I	GGNCC	1 cut(s)	155
BmrI	ACTGGG	1 cut(s)	256
BmsI	GCATC	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	153
Bsa29I	ATCGAT	2 cut(s)	566, 736
BsaJI	CCNNGG	3 cut(s)	158, 194, 367
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 200, 481, 651
Bse1I	ACTGG	4 cut(s)	242, 262, 464, 634
BseCI	ATCGAT	2 cut(s)	566, 736
BseDI	CCNNGG	3 cut(s)	158, 194, 367
BseGI	GGATG	1 cut(s)	51
BseLI	CCNNNNNNNGG	4 cut(s)	199, 200, 481, 651
BseMII	CTCAG	2 cut(s)	330, 682
BseNI	ACTGG	4 cut(s)	242, 262, 464, 634
BseRI	GAGGAG	2 cut(s)	110, 279
BseXI	GCAGC	2 cut(s)	549, 719
BshFI	GGCC	1 cut(s)	274
BshVI	ATCGAT	2 cut(s)	566, 736
BslI	CCNNNNNNNGG	4 cut(s)	199, 200, 481, 651
BsnI	GGCC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	175
Bsp19I	CCATGG	1 cut(s)	158
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	2 cut(s)	329, 681
BspDI	ATCGAT	2 cut(s)	566, 736
BspPI	GGATC	1 cut(s)	170
BsrI	ACTGG	4 cut(s)	242, 262, 464, 634
BssECI	CCNNGG	3 cut(s)	158, 194, 367
BssMI	GATC	1 cut(s)	175
BssT1I	CCWWGG	2 cut(s)	158, 194
Bst4CI	ACNGT	2 cut(s)	152, 371
BstDEI	CTNAG	2 cut(s)	316, 668
BstDSI	CCRYGG	2 cut(s)	158, 367
BstENI	CCTNNNNNAGG	2 cut(s)	479, 649
BstF5I	GGATG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	178
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	534, 704
BstV1I	GCAGC	2 cut(s)	549, 719
BstXI	CCANNNNNNTGG	1 cut(s)	195
Bsu15I	ATCGAT	2 cut(s)	566, 736
BsuRI	GGCC	1 cut(s)	274
BsuTUI	ATCGAT	2 cut(s)	566, 736
BtgI	CCRYGG	2 cut(s)	158, 367
BtsCI	GGATG	1 cut(s)	51
BtsI	GCAGTG	2 cut(s)	30, 31
BtsIMutI	CAGTG	3 cut(s)	30, 31, 157
Cfr13I	GGNCC	1 cut(s)	155
ClaI	ATCGAT	2 cut(s)	566, 736
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	3 cut(s)	91, 159, 276
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	316, 668
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
Eco130I	CCWWGG	2 cut(s)	158, 194
Eco47I	GGWCC	1 cut(s)	155
EcoNI	CCTNNNNNAGG	2 cut(s)	479, 649
EcoT14I	CCWWGG	2 cut(s)	158, 194
ErhI	CCWWGG	2 cut(s)	158, 194
FaeI	CATG	3 cut(s)	94, 162, 279
FatI	CATG	3 cut(s)	90, 158, 275
FauNDI	CATATG	2 cut(s)	520, 690
Fnu4HI	GCNGC	2 cut(s)	538, 708
FokI	GGATG	1 cut(s)	58
Fsp4HI	GCNGC	2 cut(s)	538, 708
GluI	GCNGC	2 cut(s)	538, 708
GsuI	CTGGAG	1 cut(s)	153
HaeIII	GGCC	1 cut(s)	274
Hin1II	CATG	3 cut(s)	94, 162, 279
HincII	GTYRAC	1 cut(s)	281
HindII	GTYRAC	1 cut(s)	281
HinfI	GANTC	4 cut(s)	100, 241, 568, 738
HphI	GGTGA	5 cut(s)	245, 434, 495, 604, 665
Hpy166II	GTNNAC	3 cut(s)	281, 331, 577
Hpy188I	TCNGA	2 cut(s)	319, 358
Hpy188III	TCNNGA	2 cut(s)	107, 245
Hpy8I	GTNNAC	3 cut(s)	281, 331, 577
Hpy99I	CGWCG	1 cut(s)	108
HpyAV	CCTTC	3 cut(s)	316, 485, 655
HpyCH4III	ACNGT	2 cut(s)	152, 371
HpyCH4V	TGCA	3 cut(s)	28, 36, 137
HpyF10VI	GCNNNNNNNGC	2 cut(s)	534, 704
HpyF3I	CTNAG	2 cut(s)	316, 668
Hsp92II	CATG	3 cut(s)	94, 162, 279
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	2 cut(s)	172, 292
LpnPI	CCDG	9 cut(s)	33, 71, 183, 223, 258, 269, 275, 477, 647
Lsp1109I	GCAGC	2 cut(s)	549, 719
LweI	GCATC	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	671
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	8, 371
MluCI	AATT	6 cut(s)	85, 122, 207, 400, 469, 639
MmeI	TCCRAC	2 cut(s)	23, 152
MnlI	CCTC	8 cut(s)	88, 264, 300, 325, 351, 364, 450, 620
MseI	TTAA	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	534, 704
NcoI	CCATGG	1 cut(s)	158
NdeI	CATATG	2 cut(s)	520, 690
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	3 cut(s)	94, 162, 279
NmuCI	GTSAC	1 cut(s)	671
PfeI	GAWTC	4 cut(s)	100, 241, 568, 738
PkrI	GCNGC	2 cut(s)	539, 709
PsiI	TTATAA	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	155
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	2 cut(s)	538, 708
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	155
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	155
Sse9I	AATT	6 cut(s)	85, 122, 207, 400, 469, 639
StyI	CCWWGG	2 cut(s)	158, 194
TaaI	ACNGT	2 cut(s)	152, 371
TaqI	TCGA	4 cut(s)	566, 571, 736, 741
TasI	AATT	6 cut(s)	85, 122, 207, 400, 469, 639
TatI	WGTACW	1 cut(s)	231
TfiI	GAWTC	4 cut(s)	100, 241, 568, 738
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	3 cut(s)	30, 38, 157
TseFI	GTSAC	1 cut(s)	671
TseI	GCWGC	2 cut(s)	537, 707
Tsp45I	GTSAC	1 cut(s)	671
TspDTI	ATGAA	5 cut(s)	68, 79, 83, 216, 298
TspGWI	ACGGA	1 cut(s)	316
TspRI	CASTG	3 cut(s)	30, 38, 157
VpaK11BI	GGWCC	1 cut(s)	155
XagI	CCTNNNNNAGG	2 cut(s)	479, 649
XapI	RAATTY	2 cut(s)	122, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.