Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Reverse (-)

33756773 .. 33757063

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00241490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGGGCCGAGGAGCACCGGGAATCCACCACCATACTCGTCAACACCGTCGCCGCGTCCACCTTACCCGGATGATTCGAGGAGGAGGAGGATCCAAATGGCGAGAGAAGAGACGGCTGCGTGGTGCCGTGAATTTGAGAAAAACATGGCATCAGTCCGGTCCGAGATACTAAGCGAGATGAGGCAATTTCGATTGGAGCAAACAGCTCGGTTGAGGCCGCCACCACCACCACCGGCCACGACGGATCCCTACCCCTTACCGGTAGCAACAACCACCTCCGTCGCCGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.81

Weight (kDa)

9.99

Isoelectric Point (pI)

92.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	1 cut(s)	55
AciI	CCGC	3 cut(s)	53, 218, 285
AclWI	GGATC	4 cut(s)	85, 98, 239, 252
AcoI	YGGCCR	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	259
AgeI	ACCGGT	1 cut(s)	259
AluBI	AGCT	1 cut(s)	206
AluI	AGCT	1 cut(s)	206
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	104
AlwI	GGATC	4 cut(s)	85, 98, 239, 252
AoxI	GGCC	3 cut(s)	5, 215, 234
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	1 cut(s)	131
AsiGI	ACCGGT	1 cut(s)	259
AspS9I	GGNCC	2 cut(s)	5, 159
AsuC2I	CCSGG	2 cut(s)	19, 68
AvaII	GGWCC	1 cut(s)	159
BamHI	GGATCC	2 cut(s)	90, 244
BanI	GGYRCC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	103
BceAI	ACGGC	2 cut(s)	111, 129
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BcnI	CCSGG	2 cut(s)	19, 68
BcoDI	GTCTC	1 cut(s)	104
BisI	GCNGC	4 cut(s)	53, 117, 218, 285
BlsI	GCNGC	4 cut(s)	54, 118, 219, 286
Bme1390I	CCNGG	2 cut(s)	19, 68
Bme18I	GGWCC	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	5, 159
BmiI	GGNNCC	4 cut(s)	6, 92, 125, 246
BmrFI	CCNGG	2 cut(s)	19, 68
BmsI	GCATC	1 cut(s)	158
BpuMI	CCSGG	2 cut(s)	19, 68
BsaJI	CCNNGG	1 cut(s)	8
BsaWI	WCCGGW	2 cut(s)	156, 259
Bsc4I	CCNNNNNNNGG	1 cut(s)	259
Bse118I	RCCGGY	2 cut(s)	232, 259
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	76
BseLI	CCNNNNNNNGG	1 cut(s)	259
BseRI	GAGGAG	4 cut(s)	25, 94, 97, 100
BseXI	GCAGC	1 cut(s)	103
Bsh1236I	CGCG	1 cut(s)	55
BshFI	GGCC	3 cut(s)	7, 217, 236
BshNI	GGYRCC	1 cut(s)	123
BshTI	ACCGGT	1 cut(s)	259
BsiHKAI	GWGCWC	1 cut(s)	17
BsiSI	CCGG	5 cut(s)	18, 68, 157, 233, 260
BslI	CCNNNNNNNGG	1 cut(s)	259
BsmAI	GTCTC	1 cut(s)	104
BsmBI	CGTCTC	1 cut(s)	104
BsnI	GGCC	3 cut(s)	7, 217, 236
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	2 cut(s)	90, 244
BspACI	CCGC	3 cut(s)	53, 218, 285
BspANI	GGCC	3 cut(s)	7, 217, 236
BspFNI	CGCG	1 cut(s)	55
BspLI	GGNNCC	4 cut(s)	6, 92, 125, 246
BspPI	GGATC	4 cut(s)	85, 98, 239, 252
BspT107I	GGYRCC	1 cut(s)	123
BsrFI	RCCGGY	2 cut(s)	232, 259
BssAI	RCCGGY	2 cut(s)	232, 259
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	90, 244
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	170
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	93, 247
BstMAI	GTCTC	1 cut(s)	104
BstMBI	GATC	2 cut(s)	90, 244
BstSCI	CCNGG	2 cut(s)	17, 66
BstUI	CGCG	1 cut(s)	55
BstV1I	GCAGC	1 cut(s)	103
BstX2I	RGATCY	2 cut(s)	90, 244
BstYI	RGATCY	2 cut(s)	90, 244
BsuRI	GGCC	3 cut(s)	7, 217, 236
BtsCI	GGATG	1 cut(s)	76
Cfr10I	RCCGGY	2 cut(s)	232, 259
Cfr13I	GGNCC	2 cut(s)	5, 159
CpoI	CGGWCCG	1 cut(s)	159
CseI	GACGC	1 cut(s)	44
CspAI	ACCGGT	1 cut(s)	259
CspI	CGGWCCG	1 cut(s)	159
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	5 cut(s)	7, 116, 206, 217, 236
CviKI_1	RGCY	5 cut(s)	7, 116, 206, 217, 236
DdeI	CTNAG	1 cut(s)	170
DpnI	GATC	2 cut(s)	92, 246
DpnII	GATC	2 cut(s)	90, 244
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	1 cut(s)	102
EarI	CTCTTC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	159
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	1 cut(s)	148
FaiI	YATR	2 cut(s)	34, 146
FatI	CATG	1 cut(s)	144
Fnu4HI	GCNGC	4 cut(s)	53, 117, 218, 285
FokI	GGATG	1 cut(s)	83
Fsp4HI	GCNGC	4 cut(s)	53, 117, 218, 285
GluI	GCNGC	4 cut(s)	53, 117, 218, 285
HaeIII	GGCC	3 cut(s)	7, 217, 236
HapII	CCGG	5 cut(s)	18, 68, 157, 233, 260
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	1 cut(s)	148
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	2 cut(s)	22, 74
HpaII	CCGG	5 cut(s)	18, 68, 157, 233, 260
Hpy166II	GTNNAC	2 cut(s)	42, 59
Hpy188I	TCNGA	1 cut(s)	163
Hpy8I	GTNNAC	2 cut(s)	42, 59
Hpy99I	CGWCG	3 cut(s)	52, 244, 284
HpyCH4III	ACNGT	1 cut(s)	48
HpyF3I	CTNAG	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	90, 244
LmnI	GCTCC	2 cut(s)	12, 196
LpnPI	CCDG	5 cut(s)	31, 81, 170, 246, 273
Lsp1109I	GCAGC	1 cut(s)	103
LweI	GCATC	1 cut(s)	158
MalI	GATC	2 cut(s)	92, 246
MboI	GATC	2 cut(s)	90, 244
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	2 cut(s)	90, 244
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	2 cut(s)	131, 185
MnlI	CCTC	8 cut(s)	3, 72, 75, 78, 81, 174, 207, 286
MspI	CCGG	5 cut(s)	18, 68, 157, 233, 260
MspR9I	CCNGG	2 cut(s)	19, 68
MvnI	CGCG	1 cut(s)	55
NciI	CCSGG	2 cut(s)	19, 68
NdeII	GATC	2 cut(s)	90, 244
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	4 cut(s)	6, 92, 125, 246
NmeAIII	GCCGAG	1 cut(s)	33
PcsI	WCGNNNNNNNCGW	1 cut(s)	44
PfeI	GAWTC	2 cut(s)	22, 74
PinAI	ACCGGT	1 cut(s)	259
PkrI	GCNGC	4 cut(s)	54, 118, 219, 286
PspN4I	GGNNCC	4 cut(s)	6, 92, 125, 246
PspPI	GGNCC	2 cut(s)	5, 159
PsuI	RGATCY	2 cut(s)	90, 244
Rsr2I	CGGWCCG	1 cut(s)	159
RsrII	CGGWCCG	1 cut(s)	159
SatI	GCNGC	4 cut(s)	53, 117, 218, 285
Sau3AI	GATC	2 cut(s)	90, 244
Sau96I	GGNCC	2 cut(s)	5, 159
ScrFI	CCNGG	2 cut(s)	19, 68
SduI	GDGCHC	1 cut(s)	17
SetI	ASST	3 cut(s)	64, 208, 278
SfaNI	GCATC	1 cut(s)	158
SinI	GGWCC	1 cut(s)	159
Sse9I	AATT	2 cut(s)	131, 185
SsiI	CCGC	3 cut(s)	53, 218, 285
StyD4I	CCNGG	2 cut(s)	17, 66
TaaI	ACNGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	77, 190
TasI	AATT	2 cut(s)	131, 185
TauI	GCSGC	3 cut(s)	55, 220, 287
TfiI	GAWTC	2 cut(s)	22, 74
TseI	GCWGC	1 cut(s)	116
TspGWI	ACGGA	2 cut(s)	257, 268
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.