Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

39142750 .. 39143264

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00359090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 504 bp

ATGGTTCATATCATGAATCCGATTCAGGCTATCAACTTCACTCTCCCCACATCTTTTGAGACAGTGAGTTCAAAGGGTAGAGATTTGGCTTTGGATGGGCTTTGGGATGATAGCAGTGGATTGCCCACCATGAAGACTAAATTTAAGAGTTTCTGCAAGCCCGGTAATGATAGAAGAAGGCTGAGAAATTATGGTTTGGTTGATGTAGTTGTTTCAATTAGTTCTTTGAGTTGGTTGGATCTTTCGAATAATGGGGATAAGTGGGTGGCTTCTTGGGAGAACATGGGATTGTATGTTCCTTGTGGAAGGTCTAAAGTTACTCGGAAGACCACCACTAATTTAGTCTATATAATTTCTCATGTGGTGGATTGTGACAGAGCTGCAGGAGAGATTTATCTGATTTATCCAAAGCAGGAATTTGTTTGGGCACTTTATAATGAAGCAACTTTTGACTCGAGGGAAGAAACCTTTTGGGAGTTAAAGAAAAGCGATGCTATGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3444 DnaJ

Protein Analysis

167

Amino Acids

19.06

Weight (kDa)

6.73

Isoelectric Point (pI)

32.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3444	PF11926	62 - 153	1.2e-14	Domain of unknown function (DUF3444)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AclWI	GGATC	1 cut(s)	246
AcsI	RAATTY	2 cut(s)	140, 416
AgsI	TTSAA	2 cut(s)	72, 216
AloI	GAACNNNNNNTCC	2 cut(s)	279, 311
AluBI	AGCT	1 cut(s)	380
AluI	AGCT	1 cut(s)	380
Alw26I	GTCTC	1 cut(s)	53
AlwI	GGATC	1 cut(s)	246
Ama87I	CYCGRG	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	380
ApoI	RAATTY	2 cut(s)	140, 416
AsuC2I	CCSGG	1 cut(s)	162
AsuII	TTCGAA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	454
BaeGI	GKGCMC	1 cut(s)	430
BbsI	GAAGAC	2 cut(s)	140, 332
BbvI	GCAGC	1 cut(s)	367
BccI	CCATC	1 cut(s)	89
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	53
BfmI	CTRYAG	1 cut(s)	381
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	162
BmeT110I	CYCGRG	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	481
BpiI	GAAGAC	2 cut(s)	140, 332
Bpu14I	TTCGAA	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	162
BseGI	GGATG	2 cut(s)	100, 112
BseMII	CTCAG	1 cut(s)	173
BseSI	GKGCMC	1 cut(s)	430
BseXI	GCAGC	1 cut(s)	367
BsiHKCI	CYCGRG	1 cut(s)	454
BsiSI	CCGG	1 cut(s)	162
BsmAI	GTCTC	1 cut(s)	53
BsoBI	CYCGRG	1 cut(s)	454
Bsp119I	TTCGAA	1 cut(s)	245
Bsp1286I	GDGCHC	1 cut(s)	430
Bsp143I	GATC	1 cut(s)	238
BspCNI	CTCAG	1 cut(s)	174
BspHI	TCATGA	1 cut(s)	12
BspMAI	CTGCAG	1 cut(s)	385
BspPI	GGATC	1 cut(s)	246
BspT104I	TTCGAA	1 cut(s)	245
BssMI	GATC	1 cut(s)	238
Bst4CI	ACNGT	1 cut(s)	64
BstBI	TTCGAA	1 cut(s)	245
BstC8I	GCNNGC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	100, 112
BstKTI	GATC	1 cut(s)	241
BstMAI	GTCTC	1 cut(s)	53
BstMBI	GATC	1 cut(s)	238
BstSCI	CCNGG	1 cut(s)	160
BstSFI	CTRYAG	1 cut(s)	381
BstSLI	GKGCMC	1 cut(s)	430
BstV1I	GCAGC	1 cut(s)	367
BstV2I	GAAGAC	2 cut(s)	140, 332
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
BtsCI	GGATG	2 cut(s)	100, 112
BtsI	GCAGTG	1 cut(s)	121
BtsIMutI	CAGTG	2 cut(s)	69, 121
Cac8I	GCNNGC	1 cut(s)	158
CciI	TCATGA	1 cut(s)	12
CspCI	CAANNNNNGTGG	2 cut(s)	37, 72
CviAII	CATG	4 cut(s)	13, 130, 283, 359
CviJI	RGCY	7 cut(s)	29, 89, 100, 160, 181, 269, 380
CviKI_1	RGCY	7 cut(s)	29, 89, 100, 160, 181, 269, 380
DdeI	CTNAG	1 cut(s)	182
DpnI	GATC	1 cut(s)	240
DpnII	GATC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	454
FaeI	CATG	4 cut(s)	16, 133, 286, 362
FatI	CATG	4 cut(s)	12, 129, 282, 358
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	2 cut(s)	107, 119
Fsp4HI	GCNGC	1 cut(s)	381
GluI	GCNGC	1 cut(s)	381
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	4 cut(s)	16, 133, 286, 362
HinfI	GANTC	3 cut(s)	16, 22, 452
HpaII	CCGG	1 cut(s)	162
Hpy188I	TCNGA	3 cut(s)	21, 324, 399
Hpy188III	TCNNGA	1 cut(s)	13
HpyAV	CCTTC	2 cut(s)	171, 300
HpyCH4III	ACNGT	1 cut(s)	64
HpyCH4V	TGCA	2 cut(s)	156, 383
HpyF3I	CTNAG	1 cut(s)	182
Hsp92II	CATG	4 cut(s)	16, 133, 286, 362
Kzo9I	GATC	1 cut(s)	238
LpnPI	CCDG	4 cut(s)	11, 175, 369, 398
Lsp1109I	GCAGC	1 cut(s)	367
LweI	GCATC	1 cut(s)	481
MaeIII	GTNAC	2 cut(s)	316, 371
MalI	GATC	1 cut(s)	240
MboI	GATC	1 cut(s)	238
MboII	GAAGA	4 cut(s)	145, 186, 337, 473
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	430
MluCI	AATT	6 cut(s)	140, 187, 216, 337, 351, 416
MlyI	GAGTC	1 cut(s)	446
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	1 cut(s)	450
MseI	TTAA	2 cut(s)	144, 479
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	162
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	1 cut(s)	238
NlaIII	CATG	4 cut(s)	16, 133, 286, 362
NmuCI	GTSAC	1 cut(s)	371
NspV	TTCGAA	1 cut(s)	245
PaeR7I	CTCGAG	1 cut(s)	454
PagI	TCATGA	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	16, 22
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	435
PspXI	VCTCGAGB	1 cut(s)	454
PstI	CTGCAG	1 cut(s)	385
PsuI	RGATCY	1 cut(s)	238
SaqAI	TTAA	2 cut(s)	144, 479
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	430
SetI	ASST	3 cut(s)	311, 382, 470
SfaNI	GCATC	1 cut(s)	481
SfcI	CTRYAG	1 cut(s)	381
Sfr274I	CTCGAG	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	454
SmlI	CTYRAG	1 cut(s)	454
SmoI	CTYRAG	1 cut(s)	454
Sse9I	AATT	6 cut(s)	140, 187, 216, 337, 351, 416
StyD4I	CCNGG	1 cut(s)	160
TaaI	ACNGT	1 cut(s)	64
TaqI	TCGA	2 cut(s)	245, 455
TasI	AATT	6 cut(s)	140, 187, 216, 337, 351, 416
TfiI	GAWTC	2 cut(s)	16, 22
Tru1I	TTAA	2 cut(s)	144, 479
Tru9I	TTAA	2 cut(s)	144, 479
TscAI	CASTG	2 cut(s)	69, 121
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	1 cut(s)	380
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	3 cut(s)	29, 146, 453
TspRI	CASTG	2 cut(s)	69, 121
XapI	RAATTY	2 cut(s)	140, 416
XhoI	CTCGAG	1 cut(s)	454

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.