Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000365.1

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

227317 .. 228840

Gene Structure 1524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000365.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

atggaatgtctagatgaaaccaggacattgaaatatgatcaggtatttgtgcaatgttctgaccatgctatcttcaatggccacactacttcaaccgcaggccaggacaattttgctgttgagtgcaatgtaattattgctaaaaacatttgtgtacacctgggagatgagcgttttcttatggatggagaaagtcttactctccggagatattcttcaatggatgcatttggtgccaagaaggaagtcattgctttcgtagttgtgcacatcgtttttcaagatggattgttgttgattcatgaacaagaacgaggtcttgccaagagcactataattgcagggtattcccaagcaggttatgtggaagaagtttttgagtatttgtcgtggatgagaatggatgtagcaatccaaatgaattgtgaagctatggtacaaagtgccttggtcaatctgcacttgaaatgtggaagtttacaagaggctgcaaaaatctttgatgtgataaaagttgctgatcacctatttgatttctacataattttcattgaccctctgattacttgctgcttgagatacatggataagaagcccaaccatggaagtttttttaagtgttgtccaattggtatagttgaggtgccaaagaagtggtttctggatgtgctgaatatgaatttggagaccatggttggaaaaattaaatatgatggggaaaaggagctgcatgtgaatctctttaaaattcatagggagccacttgagaaatgtttggggtatgctctacctactttggatgcaatttgtttatgtgtccaagagcttttcttggttgattgggcttttgcaaatataccaatatcttggaaggatgtggaaaccaagttgtttgctcttaatgtggttactgagatattgaggtggataggagagggtctggtaagcagtgacttccctttggtattgccatcagccatcttgcatagaagagttgcaatgtatggaacagctgcaacaacaatgttcatgaaacatttgtactgcaactggttacacttctttgctggagtgcctattgatatgcatctaaaccatgactggaaagagagcttccctgatgatccaactgggaaatttggtcagctcaaagcattggtcggaggtgtccagattttgactcagaatgtgaaacttgaggacaagtttctgttaagggggctgcattgttatgaaaataggcttaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009605 GO:0009607 GO:0009615 GO:0009719 GO:0009725 GO:0009751 GO:0009892 GO:0009987 GO:0010025 GO:0010033 GO:0010166 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043331 GO:0044237 GO:0044238 GO:0046483 GO:0046677 GO:0048518 GO:0048519 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060147 GO:0060148 GO:0060255 GO:0060968 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:1901360 GO:1901568 GO:1901570 GO:1901576 GO:1901698 GO:1901699 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

416

Amino Acids

47.44

Weight (kDa)

5.81

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	347
AccB1I	GGYRCC	2 cut(s)	233, 643
AccIII	TCCGGA	1 cut(s)	204
AciI	CCGC	1 cut(s)	96
AclWI	GGATC	1 cut(s)	1118
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	3 cut(s)	679, 747, 1136
AfaI	GTAC	3 cut(s)	156, 438, 1043
AfiI	CCNNNNNNNGG	1 cut(s)	602
AgsI	TTSAA	6 cut(s)	31, 76, 93, 219, 281, 466
AjnI	CCWGG	3 cut(s)	20, 102, 159
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AluBI	AGCT	6 cut(s)	431, 727, 826, 1013, 1113, 1147
AluI	AGCT	6 cut(s)	431, 727, 826, 1013, 1113, 1147
Alw21I	GWGCWC	2 cut(s)	270, 332
Alw26I	GTCTC	1 cut(s)	680
Alw44I	GTGCAC	1 cut(s)	266
AlwI	GGATC	1 cut(s)	1118
Aor13HI	TCCGGA	1 cut(s)	204
AoxI	GGCC	2 cut(s)	79, 100
ApaLI	GTGCAC	1 cut(s)	266
ApeKI	GCWGC	5 cut(s)	488, 570, 727, 1013, 1222
ApoI	RAATTY	3 cut(s)	679, 747, 1136
ArsI	GACNNNNNNTTYG	2 cut(s)	1143, 1175
AsuHPI	GGTGA	1 cut(s)	515
BaeGI	GKGCMC	1 cut(s)	270
BalI	TGGCCA	1 cut(s)	81
BanI	GGYRCC	2 cut(s)	233, 643
BarI	GAAGNNNNNNTAC	2 cut(s)	420, 452
Bbv12I	GWGCWC	2 cut(s)	270, 332
BbvI	GCAGC	5 cut(s)	475, 557, 714, 1000, 1209
BccI	CCATC	5 cut(s)	179, 278, 707, 979, 986
BciT130I	CCWGG	3 cut(s)	22, 104, 161
BclI	TGATCA	2 cut(s)	37, 520
BcoDI	GTCTC	1 cut(s)	680
BfaI	CTAG	1 cut(s)	11
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	5 cut(s)	489, 571, 728, 1014, 1223
BlsI	GCNGC	5 cut(s)	490, 572, 729, 1015, 1224
Bme1390I	CCNGG	3 cut(s)	22, 104, 161
BmiI	GGNNCC	3 cut(s)	235, 645, 759
BmrFI	CCNGG	3 cut(s)	22, 104, 161
BmrI	ACTGGG	1 cut(s)	1140
BmsI	GCATC	3 cut(s)	214, 790, 1096
BmuI	ACTGGG	1 cut(s)	1140
BpmI	CTGGAG	1 cut(s)	1089
BpuEI	CTTGAG	3 cut(s)	595, 785, 1217
BsaBI	GATNNNNATC	1 cut(s)	1086
BsaI	GGTCTC	1 cut(s)	680
BsaJI	CCNNGG	4 cut(s)	160, 447, 601, 690
BsaWI	WCCGGW	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	1 cut(s)	602
Bse1I	ACTGG	3 cut(s)	1055, 1106, 1135
Bse3DI	GCAATG	4 cut(s)	59, 133, 249, 1005
Bse8I	GATNNNNATC	1 cut(s)	1086
BseAI	TCCGGA	1 cut(s)	204
BseBI	CCWGG	3 cut(s)	22, 104, 161
BseDI	CCNNGG	4 cut(s)	160, 447, 601, 690
BseGI	GGATG	7 cut(s)	190, 229, 399, 409, 670, 805, 880
BseJI	GATNNNNATC	1 cut(s)	1086
BseLI	CCNNNNNNNGG	1 cut(s)	602
BseMI	GCAATG	4 cut(s)	59, 133, 249, 1005
BseMII	CTCAG	2 cut(s)	903, 1196
BseNI	ACTGG	3 cut(s)	1055, 1106, 1135
BseSI	GKGCMC	1 cut(s)	270
BseXI	GCAGC	5 cut(s)	475, 557, 714, 1000, 1209
BsgI	GTGCAG	1 cut(s)	443
BshFI	GGCC	2 cut(s)	81, 102
BshNI	GGYRCC	2 cut(s)	233, 643
BsiHKAI	GWGCWC	2 cut(s)	270, 332
BsiSI	CCGG	1 cut(s)	205
BslI	CCNNNNNNNGG	1 cut(s)	602
BsmAI	GTCTC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	81, 102
Bso31I	GGTCTC	1 cut(s)	680
Bsp1286I	GDGCHC	2 cut(s)	270, 332
Bsp13I	TCCGGA	1 cut(s)	204
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	3 cut(s)	37, 520, 1123
Bsp19I	CCATGG	2 cut(s)	601, 690
BspACI	CCGC	1 cut(s)	96
BspANI	GGCC	2 cut(s)	81, 102
BspCNI	CTCAG	2 cut(s)	904, 1195
BspEI	TCCGGA	1 cut(s)	204
BspHI	TCATGA	2 cut(s)	301, 1029
BspLI	GGNNCC	3 cut(s)	235, 645, 759
BspMI	ACCTGC	1 cut(s)	347
BspPI	GGATC	1 cut(s)	1118
BspT107I	GGYRCC	2 cut(s)	233, 643
BspTNI	GGTCTC	1 cut(s)	680
BsrDI	GCAATG	4 cut(s)	59, 133, 249, 1005
BsrGI	TGTACA	1 cut(s)	154
BsrI	ACTGG	3 cut(s)	1055, 1106, 1135
BssECI	CCNNGG	4 cut(s)	160, 447, 601, 690
BssMI	GATC	3 cut(s)	37, 520, 1123
BssT1I	CCWWGG	3 cut(s)	447, 601, 690
Bst2UI	CCWGG	3 cut(s)	22, 104, 161
Bst6I	CTCTTC	1 cut(s)	985
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstAUI	TGTACA	1 cut(s)	154
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	2 cut(s)	912, 1182
BstDSI	CCRYGG	2 cut(s)	601, 690
BstF5I	GGATG	7 cut(s)	190, 229, 399, 409, 670, 805, 880
BstKTI	GATC	3 cut(s)	40, 523, 1126
BstMAI	GTCTC	1 cut(s)	680
BstMBI	GATC	3 cut(s)	37, 520, 1123
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	3 cut(s)	22, 104, 161
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	3 cut(s)	20, 102, 159
BstSLI	GKGCMC	1 cut(s)	270
BstV1I	GCAGC	5 cut(s)	475, 557, 714, 1000, 1209
BstXI	CCANNNNNNTGG	2 cut(s)	654, 867
BsuRI	GGCC	2 cut(s)	81, 102
BtgI	CCRYGG	2 cut(s)	601, 690
BtsCI	GGATG	7 cut(s)	190, 229, 399, 409, 670, 805, 880
BtsI	GCAGTG	1 cut(s)	955
BtsIMutI	CAGTG	1 cut(s)	955
BveI	ACCTGC	1 cut(s)	347
Cac8I	GCNNGC	1 cut(s)	100
CciI	TCATGA	2 cut(s)	301, 1029
Csp6I	GTAC	3 cut(s)	155, 437, 1042
CviAII	CATG	8 cut(s)	65, 302, 583, 602, 691, 731, 1030, 1097
CviQI	GTAC	3 cut(s)	155, 437, 1042
DdeI	CTNAG	2 cut(s)	912, 1182
DpnI	GATC	3 cut(s)	39, 522, 1125
DpnII	GATC	3 cut(s)	37, 520, 1123
DraI	TTTAAA	1 cut(s)	745
EaeI	YGGCCR	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	985
EarI	CTCTTC	1 cut(s)	985
Eco130I	CCWWGG	3 cut(s)	447, 601, 690
Eco31I	GGTCTC	1 cut(s)	680
EcoRII	CCWGG	3 cut(s)	20, 102, 159
EcoT14I	CCWWGG	3 cut(s)	447, 601, 690
EcoT22I	ATGCAT	2 cut(s)	229, 1089
ErhI	CCWWGG	3 cut(s)	447, 601, 690
FaeI	CATG	8 cut(s)	68, 305, 586, 605, 694, 734, 1033, 1100
FatI	CATG	8 cut(s)	64, 301, 582, 601, 690, 730, 1029, 1096
FbaI	TGATCA	2 cut(s)	37, 520
Fnu4HI	GCNGC	5 cut(s)	489, 571, 728, 1014, 1223
FokI	GGATG	7 cut(s)	197, 236, 406, 416, 677, 812, 887
Fsp4HI	GCNGC	5 cut(s)	489, 571, 728, 1014, 1223
FspBI	CTAG	1 cut(s)	11
GluI	GCNGC	5 cut(s)	489, 571, 728, 1014, 1223
GsuI	CTGGAG	1 cut(s)	1089
HaeIII	GGCC	2 cut(s)	81, 102
HapII	CCGG	1 cut(s)	205
Hin1II	CATG	8 cut(s)	68, 305, 586, 605, 694, 734, 1033, 1100
HinfI	GANTC	3 cut(s)	298, 736, 1180
HpaII	CCGG	1 cut(s)	205
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	4 cut(s)	155, 157, 268, 479
Hpy188I	TCNGA	4 cut(s)	61, 561, 1163, 1185
Hpy188III	TCNNGA	7 cut(s)	11, 205, 281, 302, 662, 1030, 1171
Hpy8I	GTNNAC	4 cut(s)	155, 157, 268, 479
HpyAV	CCTTC	2 cut(s)	235, 865
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	912, 1182
Hsp92II	CATG	8 cut(s)	68, 305, 586, 605, 694, 734, 1033, 1100
Kpn2I	TCCGGA	1 cut(s)	204
Ksp22I	TGATCA	2 cut(s)	37, 520
Kzo9I	GATC	3 cut(s)	37, 520, 1123
LmnI	GCTCC	2 cut(s)	724, 757
Lsp1109I	GCAGC	5 cut(s)	475, 557, 714, 1000, 1209
LweI	GCATC	3 cut(s)	214, 790, 1096
MaeI	CTAG	1 cut(s)	11
MaeIII	GTNAC	3 cut(s)	907, 950, 1053
MalI	GATC	3 cut(s)	39, 522, 1125
MboI	GATC	3 cut(s)	37, 520, 1123
MboII	GAAGA	4 cut(s)	64, 207, 380, 1002
MfeI	CAATTG	1 cut(s)	627
MhlI	GDGCHC	2 cut(s)	270, 332
MlsI	TGGCCA	1 cut(s)	81
MluNI	TGGCCA	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	1174
MmeI	TCCRAC	3 cut(s)	676, 1141, 1151
MnlI	CCTC	8 cut(s)	308, 478, 567, 634, 915, 928, 1157, 1192
Mox20I	TGGCCA	1 cut(s)	81
Mph1103I	ATGCAT	2 cut(s)	229, 1089
MroI	TCCGGA	1 cut(s)	204
MscI	TGGCCA	1 cut(s)	81
MseI	TTAA	6 cut(s)	615, 705, 744, 900, 1214, 1245
MslI	CAYNNNNRTG	1 cut(s)	1230
Msp20I	TGGCCA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	1013
MspI	CCGG	1 cut(s)	205
MspR9I	CCNGG	3 cut(s)	22, 104, 161
MunI	CAATTG	1 cut(s)	627
MvaI	CCWGG	3 cut(s)	22, 104, 161
MwoI	GCNNNNNNNGC	1 cut(s)	233
NcoI	CCATGG	2 cut(s)	601, 690
NdeII	GATC	3 cut(s)	37, 520, 1123
NlaIII	CATG	8 cut(s)	68, 305, 586, 605, 694, 734, 1033, 1100
NlaIV	GGNNCC	3 cut(s)	235, 645, 759
NmuCI	GTSAC	1 cut(s)	950
NsiI	ATGCAT	2 cut(s)	229, 1089
NspI	RCATGY	1 cut(s)	734
PagI	TCATGA	2 cut(s)	301, 1029
PfeI	GAWTC	2 cut(s)	298, 736
PkrI	GCNGC	5 cut(s)	490, 572, 729, 1015, 1224
PleI	GAGTC	1 cut(s)	1174
PpsI	GAGTC	1 cut(s)	1174
Psp6I	CCWGG	3 cut(s)	20, 102, 159
PspGI	CCWGG	3 cut(s)	20, 102, 159
PspN4I	GGNNCC	3 cut(s)	235, 645, 759
PvuII	CAGCTG	1 cut(s)	1013
RsaI	GTAC	3 cut(s)	156, 438, 1043
RsaNI	GTAC	3 cut(s)	155, 437, 1042
RseI	CAYNNNNRTG	1 cut(s)	1230
SaqAI	TTAA	6 cut(s)	615, 705, 744, 900, 1214, 1245
SatI	GCNGC	5 cut(s)	489, 571, 728, 1014, 1223
Sau3AI	GATC	3 cut(s)	37, 520, 1123
SchI	GAGTC	1 cut(s)	1174
ScrFI	CCNGG	3 cut(s)	22, 104, 161
SduI	GDGCHC	2 cut(s)	270, 332
SfaNI	GCATC	3 cut(s)	214, 790, 1096
SmiMI	CAYNNNNRTG	1 cut(s)	1230
SmlI	CTYRAG	3 cut(s)	574, 764, 1196
SmoI	CTYRAG	3 cut(s)	574, 764, 1196
SsiI	CCGC	1 cut(s)	96
SspMI	CTAG	1 cut(s)	11
StyD4I	CCNGG	3 cut(s)	20, 102, 159
StyI	CCWWGG	3 cut(s)	447, 601, 690
TatI	WGTACW	2 cut(s)	154, 1041
TfiI	GAWTC	2 cut(s)	298, 736
Tru1I	TTAA	6 cut(s)	615, 705, 744, 900, 1214, 1245
Tru9I	TTAA	6 cut(s)	615, 705, 744, 900, 1214, 1245
TscAI	CASTG	1 cut(s)	955
TseFI	GTSAC	1 cut(s)	950
TseI	GCWGC	5 cut(s)	488, 570, 727, 1013, 1222
Tsp45I	GTSAC	1 cut(s)	950
TspRI	CASTG	1 cut(s)	955
VneI	GTGCAC	1 cut(s)	266
XapI	RAATTY	3 cut(s)	679, 747, 1136
XbaI	TCTAGA	1 cut(s)	10
XceI	RCATGY	1 cut(s)	734
XspI	CTAG	1 cut(s)	11
Zsp2I	ATGCAT	2 cut(s)	229, 1089

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.