Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

8713300 .. 8713638

Gene Structure 339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36581

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGTTGGGGCTCCTACCCTAACAACTGGTATCAGAGCCCACATCATGGGGCCGAGGAGCACTGGGAATCCACCACCATACTCGTTAGCACCGCCGCGTCCACCTGACCTCGATGAAGTGAGGAGGAAGAGGATCCAAATCGCAAAAGAACAAGTAGCGGAAAGGACAGCTGCGTGGCGCCGTGAACTCGAGAAAACCATGGCGTCGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

70

Amino Acids

7.79

Weight (kDa)

10.81

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	177
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccII	CGCG	1 cut(s)	97
AciI	CCGC	3 cut(s)	92, 95, 158
AclWI	GGATC	2 cut(s)	127, 140
AcyI	GRCGYC	2 cut(s)	178, 203
AfiI	CCNNNNNNNGG	1 cut(s)	46
AluBI	AGCT	1 cut(s)	170
AluI	AGCT	1 cut(s)	170
Alw21I	GWGCWC	1 cut(s)	62
AlwI	GGATC	2 cut(s)	127, 140
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	1 cut(s)	170
AspLEI	GCGC	1 cut(s)	180
AspS9I	GGNCC	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	177
BanII	GRGCYC	2 cut(s)	13, 40
Bbv12I	GWGCWC	1 cut(s)	62
BbvI	GCAGC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	165
BfoI	RGCGCY	1 cut(s)	181
BisI	GCNGC	2 cut(s)	95, 171
BlsI	GCNGC	2 cut(s)	96, 172
BmeT110I	CYCGRG	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	4 cut(s)	12, 51, 134, 179
BmrI	ACTGGG	1 cut(s)	72
BmuI	ACTGGG	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	137
BsaHI	GRCGYC	2 cut(s)	178, 203
BsaJI	CCNNGG	2 cut(s)	53, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	46
Bse1I	ACTGG	2 cut(s)	31, 67
Bse8I	GATNNNNATC	1 cut(s)	137
BseDI	CCNNGG	2 cut(s)	53, 198
BseJI	GATNNNNATC	1 cut(s)	137
BseLI	CCNNNNNNNGG	1 cut(s)	46
BseNI	ACTGG	2 cut(s)	31, 67
BseRI	GAGGAG	2 cut(s)	70, 136
BseXI	GCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	97
BshFI	GGCC	1 cut(s)	52
BshNI	GGYRCC	1 cut(s)	177
BsiHKAI	GWGCWC	1 cut(s)	62
BsiHKCI	CYCGRG	1 cut(s)	188
BslI	CCNNNNNNNGG	1 cut(s)	46
BsnI	GGCC	1 cut(s)	52
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	3 cut(s)	13, 40, 62
Bsp143I	GATC	1 cut(s)	132
Bsp19I	CCATGG	1 cut(s)	198
BspACI	CCGC	3 cut(s)	92, 95, 158
BspANI	GGCC	1 cut(s)	52
BspFNI	CGCG	1 cut(s)	97
BspLI	GGNNCC	4 cut(s)	12, 51, 134, 179
BspPI	GGATC	2 cut(s)	127, 140
BspT107I	GGYRCC	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	31, 67
BssECI	CCNNGG	2 cut(s)	53, 198
BssMI	GATC	1 cut(s)	132
BssNI	GRCGYC	2 cut(s)	178, 203
BssT1I	CCWWGG	1 cut(s)	198
Bst6I	CTCTTC	1 cut(s)	122
BstACI	GRCGYC	2 cut(s)	178, 203
BstDSI	CCRYGG	1 cut(s)	198
BstFNI	CGCG	1 cut(s)	97
BstH2I	RGCGCY	1 cut(s)	181
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	1 cut(s)	135
BstMBI	GATC	1 cut(s)	132
BstUI	CGCG	1 cut(s)	97
BstV1I	GCAGC	1 cut(s)	157
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	1 cut(s)	198
BtsIMutI	CAGTG	1 cut(s)	60
CfoI	GCGC	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	50
CseI	GACGC	2 cut(s)	86, 192
CviAII	CATG	2 cut(s)	46, 199
CviJI	RGCY	4 cut(s)	11, 38, 52, 170
CviKI_1	RGCY	4 cut(s)	11, 38, 52, 170
DinI	GGCGCC	1 cut(s)	179
DpnI	GATC	1 cut(s)	134
DpnII	GATC	1 cut(s)	132
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco130I	CCWWGG	1 cut(s)	198
Eco24I	GRGCYC	2 cut(s)	13, 40
Eco88I	CYCGRG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	198
EcoT38I	GRGCYC	2 cut(s)	13, 40
EgeI	GGCGCC	1 cut(s)	179
EheI	GGCGCC	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	198
FaeI	CATG	2 cut(s)	49, 202
FaiI	YATR	4 cut(s)	47, 79, 200, 211
FatI	CATG	2 cut(s)	45, 198
Fnu4HI	GCNGC	2 cut(s)	95, 171
FriOI	GRGCYC	2 cut(s)	13, 40
Fsp4HI	GCNGC	2 cut(s)	95, 171
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	2 cut(s)	95, 171
HaeII	RGCGCY	1 cut(s)	181
HaeIII	GGCC	1 cut(s)	52
HgaI	GACGC	2 cut(s)	86, 192
HhaI	GCGC	1 cut(s)	180
Hin1I	GRCGYC	2 cut(s)	178, 203
Hin1II	CATG	2 cut(s)	49, 202
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HinfI	GANTC	1 cut(s)	67
Hpy166II	GTNNAC	2 cut(s)	101, 185
Hpy188I	TCNGA	1 cut(s)	35
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	2 cut(s)	101, 185
Hpy99I	CGWCG	1 cut(s)	208
Hsp92I	GRCGYC	2 cut(s)	178, 203
Hsp92II	CATG	2 cut(s)	49, 202
HspAI	GCGC	1 cut(s)	178
KasI	GGCGCC	1 cut(s)	177
Kzo9I	GATC	1 cut(s)	132
LmnI	GCTCC	2 cut(s)	16, 57
LpnPI	CCDG	3 cut(s)	12, 48, 117
Lsp1109I	GCAGC	1 cut(s)	157
MalI	GATC	1 cut(s)	134
MboI	GATC	1 cut(s)	132
MboII	GAAGA	1 cut(s)	139
MflI	RGATCY	1 cut(s)	132
MhlI	GDGCHC	3 cut(s)	13, 40, 62
Mly113I	GGCGCC	1 cut(s)	178
MnlI	CCTC	5 cut(s)	48, 114, 117, 119, 123
MspA1I	CMGCKG	1 cut(s)	170
MvnI	CGCG	1 cut(s)	97
NarI	GGCGCC	1 cut(s)	178
NcoI	CCATGG	1 cut(s)	198
NdeII	GATC	1 cut(s)	132
NlaIII	CATG	2 cut(s)	49, 202
NlaIV	GGNNCC	4 cut(s)	12, 51, 134, 179
NmeAIII	GCCGAG	1 cut(s)	78
PaeR7I	CTCGAG	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	67
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	96, 172
PluTI	GGCGCC	1 cut(s)	181
PspN4I	GGNNCC	4 cut(s)	12, 51, 134, 179
PspPI	GGNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	132
PvuII	CAGCTG	1 cut(s)	170
SatI	GCNGC	2 cut(s)	95, 171
Sau3AI	GATC	1 cut(s)	132
Sau96I	GGNCC	1 cut(s)	50
SduI	GDGCHC	3 cut(s)	13, 40, 62
SetI	ASST	3 cut(s)	106, 111, 172
SfoI	GGCGCC	1 cut(s)	179
Sfr274I	CTCGAG	1 cut(s)	188
SlaI	CTCGAG	1 cut(s)	188
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
SsiI	CCGC	3 cut(s)	92, 95, 158
SspDI	GGCGCC	1 cut(s)	177
StyI	CCWWGG	1 cut(s)	198
TaqI	TCGA	2 cut(s)	111, 189
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	1 cut(s)	67
TscAI	CASTG	1 cut(s)	67
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	129
TspRI	CASTG	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	46
XhoI	CTCGAG	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.