Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000827.1

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Reverse (-)

81284 .. 82369

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000827.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgtctgctagtgatattgattcagttgtgcacatcatttttcaagatggattgttgttgattcatgaacaaaagcgaggtcttgccaagagcactataattgcagggtattatcaagcaagttatgtggaagaagcttttgagtatttgtcatggatgagaatggatataccaaacccaaataagtatgcttttactcgtgtatcaagtgtttgtggaaccatggcgatgcttgctcaaggcaagcaattgcatgttcatgtgccaactgttgctctagattgtgaagctatggtacaaagtgccttggtcaatctgcacttgaaatgtggaagtttacaagaggctacaaaaatctttgatgtgacaaaagttgatgatcacctatttgatttttacagaattttcattgagcctctgattgcttgctacttgagatacatagataagcagcccagccatggaagatatgaagatagtcatgctacagtttcatctaccatcataaatgaagaaaaatatatgtttgtgattattgacaaattatgcactgctttagtttttaagtgttgtccaattggtatagttgaggtgccagagaagtggtttctagatgtgatgaatatgaatttggagaccatggttggaaaaattaaatgtggtggggaaaaggagctgcaggtgaatctctctcaaattcataaggagccacttgagaaatgtttggggtatgctctacctactttggatgcaatttgtttatgtgtccataagcttttcttggttgattgggcttttgcaaatttaccaatatcttggaaggatgtggaatccaagttgtttgctcttaatgtggttactgagatattgatgtggataggaaagggtctggtgagcagccacttccccttggtattaccatcagccatcttgcatagaagagttgcaatgtatggagcagctgcaacaacaattttcatgaaacatttgtactgtaattggtttcacttctttgctggagtgcatgctgctatacatttaaccatgactggaaagagggcttccctaatgaaacaattttcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

361

Amino Acids

40.85

Weight (kDa)

6.75

Isoelectric Point (pI)

40.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	670
AccB1I	GGYRCC	1 cut(s)	592
AcsI	RAATTY	4 cut(s)	402, 628, 696, 802
AfaI	GTAC	2 cut(s)	297, 992
AfiI	CCNNNNNNNGG	1 cut(s)	461
AgsI	TTSAA	2 cut(s)	44, 325
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	5 cut(s)	137, 290, 676, 775, 962
AluI	AGCT	5 cut(s)	137, 290, 676, 775, 962
Alw21I	GWGCWC	2 cut(s)	33, 95
Alw26I	GTCTC	1 cut(s)	629
Alw44I	GTGCAC	1 cut(s)	29
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	6 cut(s)	451, 676, 897, 959, 962, 1028
ApoI	RAATTY	4 cut(s)	402, 628, 696, 802
ArsI	GACNNNNNNTTYG	2 cut(s)	64, 96
AsuHPI	GGTGA	3 cut(s)	374, 694, 904
BaeGI	GKGCMC	1 cut(s)	33
BaeI	ACNNNNGTAYC	2 cut(s)	186, 219
BanI	GGYRCC	1 cut(s)	592
BarI	GAAGNNNNNNTAC	2 cut(s)	279, 311
BauI	CACGAG	1 cut(s)	198
Bbv12I	GWGCWC	2 cut(s)	33, 95
BbvI	GCAGC	6 cut(s)	463, 663, 909, 949, 971, 1015
BccI	CCATC	4 cut(s)	41, 509, 928, 935
BclI	TGATCA	1 cut(s)	379
BcoDI	GTCTC	1 cut(s)	629
BfaI	CTAG	3 cut(s)	9, 278, 611
BfmI	CTRYAG	2 cut(s)	486, 677
BfuAI	ACCTGC	1 cut(s)	670
BisI	GCNGC	6 cut(s)	452, 677, 898, 960, 963, 1029
BlsI	GCNGC	6 cut(s)	453, 678, 899, 961, 964, 1030
BmiI	GGNNCC	3 cut(s)	220, 594, 708
BmsI	GCATC	2 cut(s)	219, 739
BpmI	CTGGAG	1 cut(s)	1038
BpuEI	CTTGAG	3 cut(s)	222, 454, 734
BsaI	GGTCTC	1 cut(s)	629
BsaJI	CCNNGG	5 cut(s)	222, 306, 460, 639, 909
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	1 cut(s)	1054
Bse3DI	GCAATG	1 cut(s)	954
BseDI	CCNNGG	5 cut(s)	222, 306, 460, 639, 909
BseGI	GGATG	3 cut(s)	162, 754, 829
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	1 cut(s)	954
BseMII	CTCAG	1 cut(s)	852
BseNI	ACTGG	1 cut(s)	1054
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	6 cut(s)	463, 663, 909, 949, 971, 1015
BseYI	CCCAGC	1 cut(s)	455
BsgI	GTGCAG	1 cut(s)	302
BshNI	GGYRCC	1 cut(s)	592
BsiHKAI	GWGCWC	2 cut(s)	33, 95
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	629
Bso31I	GGTCTC	1 cut(s)	629
Bsp1286I	GDGCHC	2 cut(s)	33, 95
Bsp143I	GATC	1 cut(s)	379
Bsp19I	CCATGG	3 cut(s)	222, 460, 639
BspCNI	CTCAG	1 cut(s)	853
BspHI	TCATGA	3 cut(s)	64, 978, 1082
BspLI	GGNNCC	3 cut(s)	220, 594, 708
BspMAI	CTGCAG	1 cut(s)	681
BspMI	ACCTGC	1 cut(s)	670
BspT107I	GGYRCC	1 cut(s)	592
BspTNI	GGTCTC	1 cut(s)	629
BsrDI	GCAATG	1 cut(s)	954
BsrI	ACTGG	1 cut(s)	1054
BssECI	CCNNGG	5 cut(s)	222, 306, 460, 639, 909
BssMI	GATC	1 cut(s)	379
BssSI	CACGAG	1 cut(s)	198
BssT1I	CCWWGG	5 cut(s)	222, 306, 460, 639, 909
Bst2BI	CACGAG	1 cut(s)	198
Bst4CI	ACNGT	3 cut(s)	271, 490, 995
Bst6I	CTCTTC	1 cut(s)	934
BstC8I	GCNNGC	4 cut(s)	234, 245, 427, 1026
BstDEI	CTNAG	1 cut(s)	861
BstDSI	CCRYGG	3 cut(s)	222, 460, 639
BstF5I	GGATG	3 cut(s)	162, 754, 829
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	1 cut(s)	629
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNSI	RCATGY	2 cut(s)	257, 1028
BstSFI	CTRYAG	2 cut(s)	486, 677
BstSLI	GKGCMC	1 cut(s)	33
BstV1I	GCAGC	6 cut(s)	463, 663, 909, 949, 971, 1015
BstXI	CCANNNNNNTGG	2 cut(s)	603, 816
BtgI	CCRYGG	3 cut(s)	222, 460, 639
BtgZI	GCGATG	1 cut(s)	242
BtsCI	GGATG	3 cut(s)	162, 754, 829
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	1 cut(s)	549
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	4 cut(s)	234, 245, 427, 1026
CciI	TCATGA	3 cut(s)	64, 978, 1082
Csp6I	GTAC	2 cut(s)	296, 991
CspCI	CAANNNNNGTGG	2 cut(s)	108, 143
CviQI	GTAC	2 cut(s)	296, 991
DdeI	CTNAG	1 cut(s)	861
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	934
EarI	CTCTTC	1 cut(s)	934
Eco130I	CCWWGG	5 cut(s)	222, 306, 460, 639, 909
Eco31I	GGTCTC	1 cut(s)	629
EcoT14I	CCWWGG	5 cut(s)	222, 306, 460, 639, 909
ErhI	CCWWGG	5 cut(s)	222, 306, 460, 639, 909
FalI	AAGNNNNNCTT	2 cut(s)	764, 796
FbaI	TGATCA	1 cut(s)	379
Fnu4HI	GCNGC	6 cut(s)	452, 677, 898, 960, 963, 1029
FokI	GGATG	3 cut(s)	169, 761, 836
Fsp4HI	GCNGC	6 cut(s)	452, 677, 898, 960, 963, 1029
FspBI	CTAG	3 cut(s)	9, 278, 611
GluI	GCNGC	6 cut(s)	452, 677, 898, 960, 963, 1029
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	1038
HindIII	AAGCTT	2 cut(s)	135, 773
HinfI	GANTC	4 cut(s)	20, 61, 685, 830
HphI	GGTGA	3 cut(s)	374, 694, 904
Hpy166II	GTNNAC	2 cut(s)	31, 338
Hpy188I	TCNGA	1 cut(s)	420
Hpy188III	TCNNGA	6 cut(s)	44, 65, 278, 611, 979, 1083
Hpy8I	GTNNAC	2 cut(s)	31, 338
HpyAV	CCTTC	1 cut(s)	814
HpyCH4III	ACNGT	3 cut(s)	271, 490, 995
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	861
Ksp22I	TGATCA	1 cut(s)	379
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	3 cut(s)	673, 706, 956
LpnPI	CCDG	7 cut(s)	90, 469, 609, 665, 875, 1002, 1035
Lsp1109I	GCAGC	6 cut(s)	463, 663, 909, 949, 971, 1015
LweI	GCATC	2 cut(s)	219, 739
MaeI	CTAG	3 cut(s)	9, 278, 611
MaeIII	GTNAC	2 cut(s)	364, 856
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	5 cut(s)	143, 477, 485, 524, 951
MfeI	CAATTG	2 cut(s)	248, 576
MhlI	GDGCHC	2 cut(s)	33, 95
MmeI	TCCRAC	1 cut(s)	625
MnlI	CCTC	5 cut(s)	71, 337, 426, 583, 1050
MseI	TTAA	4 cut(s)	564, 654, 849, 1040
MslI	CAYNNNNRTG	2 cut(s)	227, 258
MspA1I	CMGCKG	1 cut(s)	962
MunI	CAATTG	2 cut(s)	248, 576
MwoI	GCNNNNNNNGC	1 cut(s)	233
NcoI	CCATGG	3 cut(s)	222, 460, 639
NdeII	GATC	1 cut(s)	379
NlaIV	GGNNCC	3 cut(s)	220, 594, 708
NmuCI	GTSAC	1 cut(s)	364
NspI	RCATGY	2 cut(s)	257, 1028
PaeI	GCATGC	1 cut(s)	1028
PagI	TCATGA	3 cut(s)	64, 978, 1082
PaqCI	CACCTGC	1 cut(s)	670
PfeI	GAWTC	4 cut(s)	20, 61, 685, 830
PkrI	GCNGC	6 cut(s)	453, 678, 899, 961, 964, 1030
PspFI	CCCAGC	1 cut(s)	455
PspN4I	GGNNCC	3 cut(s)	220, 594, 708
PstI	CTGCAG	1 cut(s)	681
PvuII	CAGCTG	1 cut(s)	962
RsaI	GTAC	2 cut(s)	297, 992
RsaNI	GTAC	2 cut(s)	296, 991
RseI	CAYNNNNRTG	2 cut(s)	227, 258
SaqAI	TTAA	4 cut(s)	564, 654, 849, 1040
SatI	GCNGC	6 cut(s)	452, 677, 898, 960, 963, 1029
Sau3AI	GATC	1 cut(s)	379
SduI	GDGCHC	2 cut(s)	33, 95
SfaNI	GCATC	2 cut(s)	219, 739
SfcI	CTRYAG	2 cut(s)	486, 677
SmiMI	CAYNNNNRTG	2 cut(s)	227, 258
SmlI	CTYRAG	3 cut(s)	237, 433, 713
SmoI	CTYRAG	3 cut(s)	237, 433, 713
SphI	GCATGC	1 cut(s)	1028
SspMI	CTAG	3 cut(s)	9, 278, 611
StyI	CCWWGG	5 cut(s)	222, 306, 460, 639, 909
TaaI	ACNGT	3 cut(s)	271, 490, 995
TatI	WGTACW	1 cut(s)	990
TfiI	GAWTC	4 cut(s)	20, 61, 685, 830
Tru1I	TTAA	4 cut(s)	564, 654, 849, 1040
Tru9I	TTAA	4 cut(s)	564, 654, 849, 1040
TscAI	CASTG	1 cut(s)	556
TseFI	GTSAC	1 cut(s)	364
TseI	GCWGC	6 cut(s)	451, 676, 897, 959, 962, 1028
Tsp45I	GTSAC	1 cut(s)	364
TspRI	CASTG	1 cut(s)	556
VneI	GTGCAC	1 cut(s)	29
XapI	RAATTY	4 cut(s)	402, 628, 696, 802
XbaI	TCTAGA	2 cut(s)	277, 610
XceI	RCATGY	2 cut(s)	257, 1028
XspI	CTAG	3 cut(s)	9, 278, 611

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.