Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005168

Physical Location & Seq

Genomic Coordinates Forward (+)

8713640 .. 8716929

Gene Structure 3290 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ36582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2841 bp

ATGGGTTTTGTGTTTAGTGCTAATGATATTGATGAGAAATTAGAGAATGGGGAGAGTGTCGAGAAGAGGGCTGAGGCGACTAGTGGAGATGGTAGAGGGTTCAGTGAGCTTGAGTGTGTCATTGCTAAGTGGGACGAGGGTGGTATAGTTGAAGGCAAGGAGCAGCTCATCAATGGAATGTTAGAATTTCATGCCCTCCAACTGTTCGATAAAATGCCGAACTCAGAAGGGTTGTGTGATGCAAGAAGGACCGGGTTGTGTAATGCAGGAAGGGCCATTATGGCTCCTATGAGCATTCGAGACAAAGGGGGAGGACTCGCTACTCATTGTGAAGTTGTTGATGCTTCTGACTATTTAGGCTATCCCAAAGCACGTTCCGAGCTTTGGGATTTAGAGGAGGCAAAAATTGTTTACACCCTTACTGGTCACAGATCTAATTATATATCTGTCGACTTCCATCCTTTTGGAGAGTTATTTGCATCTGGCTCCCTGGACACAAATTTAAAAATATGGGATATCAGGAAGAAGGGGTGTATTCACACATACAAAGGCCACACACGAAGAGTCAATGCCATCAGGTTTACCCCAGATGGACGTTGGGCTGTTTCTGGTGGAGAGGACAACACTGTGAAGTTGTGGGATCTGACTGATGGAAAGCTCTTGCATGATTTTAAATGTAATGAGGGCCAGATACAATGCATAGGCTTTCATCCCCATGAGTTCCTGCTCACAACAGGTTCAGCAGATGGGACAAATAAATTTTGGGATCTTGAAACCTTTGAGCTAATTGGCTCAGCTGGACCTGAGACAACTGGAGTGTGCTTTTTGACTTTTAGTCCGGATGGGAGGGCTCTACTATGTGGTTTGCCCATCATGAAGATTATATTTAAGAGTTTCTGCAAGCCTGGTTTGGTGCTTGGAGACTTTGAGCTGATTCATGAAGAAGACCACATGCTTGGAGATCATGAGCAAAGTGCAGTTGTGACTCACTATTCCCAGTTGTGCCAAAAGGCTGGCGTTAAGTATAAAAGTTGTGATGGTGATCTTGTTGGTGTTGTGGAGGATTCACATTTTTATTATTGGAAGAAAGATCAGAGTAGTTTTGCGAAAGGGCACGTGTGGGCTCTATATGATGATGATGGAAGGCTGAGAAATTATGGTTTGGTTGATGCAGTTGTTGACTTTCTCAAAAGCAATTCAAAGTTATATTTTATGAGGTACACTTCTAATGCACTTCTTTCAAAAGATAATTGTGTCGGCTTTTTGACTAATATGCACAAGCTTTTTCAACACATGGTGGGACATGTTCATAAGGATGAGCTTTTCATGGCAACGTGCTCTTCCATTTTTCATCCTCCATTCCATGCACTTGTGAAGAAATTGTCTCTCTTTTTACCTATGGTTGCTATCCAGTCATTACGACCACTTTTGGCTGACATATTGAGAGAAGATGCACAGTTTATTTTTGGAATTATGAGGGTTGTGCACATCATTTTTCAAGATGGATGGTTGTTGATTCATGAACAAGAAATGGATGTACCAAACCCAAATGAGTATGCTTTTACTCGTGTACCAAGTGTTTGTGGAACCATGGCGATGCTTGCTCAAGGAAAGCAATTGCATGCTCATGTGCTAACTGTTGTTCTAGATTGTGAAGCTATGGTACAAAGTGCCTTGGTCAATTTGCACTTGAAATGTGGAAGTTCACAAGAAGCTGCAAAAATCTTTGATGTGACAAAAGTTGATGATCACCTATTTGACTTATACAGAATTTTCATTGAGCCTCTGATTGCTTGCTACTTGAGATACATAGATAAGCAGCTCAGCCATGGAAGATATGAAGATGGTCATGCTATAGTTTCATCTACCATCATGAATAAAGAAAAATTTATGTTTGTGACTATTGACAAATTATGCACTGCTTTAGTTTTTAAGTGTTGTCCAATTGGTATAGTGGAGGTATCAGAGAAGTGGCTTCTAGATGTGATGAATATGAATTTGGAGACCATGGTTGGAAAAATTAAATGTGGTGGGGAAAAGAGGCTGCATATGGATTTCTTTAAAATTCATAGGGGGCCACTTGAGAAATGTTTGGGGTATGCTCTAGCTACTTTGGATGCGATTTGTTTATGTGTCCAGAAGCTTTTCTTGGTTGATTGGGCTTTTGCAGATGTACCAATATCTTGGAAGGATGTGGAAACCAAGTTGTTTGCTCTTTACTTCCCTAACTTCATGATTGCATTCATCGAATTTGGCTTCGTGGCAATTGATGTTAGAGTTCTTGCATTGGTTCCTCAAATACACTTTTCAGTACACATGTGGACAAATGAAGCTCTTCTACTCGTCCTGTTGTCTGCAATTATGCACTCCCAAACAATGAAATTTGTAATTTCAAGCATTCTATTGCAGAGTCCCAATAGAGAAGCCTTGAGGTTTTTTTCTAATATGCAACATTTATATCATTGGCAATCAAATTTTAATTCTCAGGTGTGTGTTCATCTATGTGCACTACTCCATGCTTGGCAAGTTACTACAGATGATGGATACTTGCAATTGGATGATAAATTGGGTTGTGATCTTATGACTATGGATAATGAGACCGAGATGGTTCTGTATACTGGATGTCAGACTCCACATAACTGTTGGTCAATAACATATGAGAGCAGGAAAAGCAATAACAATATCAGTGGCAAGACTTGCTCTGTCTCTCTAGTGTCCAATTCATTGAATTTGTATTTAACAATATTGCTGCCATATGGAATTTTTGAGGTGGGAGAAGATTCTGTAAGTGATTTGGACATGGGAAAATGGCAGATTTTTGCAGACTCAGATGATTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00051 map00051

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

946

Amino Acids

106.76

Weight (kDa)

5.59

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	120 - 287	7.6e-22	CDC20/Fizzy WD40 domain
WD40_Gbeta	PF25391	124 - 208	6.6e-14	G protein beta WD-40 repeat protein
Beta-prop_THOC3	PF25174	126 - 243	2.2e-26	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	127 - 287	2.7e-32	WDR5 beta-propeller domain
Beta-prop_WDR36-Utp21_2nd	PF25168	128 - 228	8.5e-13	WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_1st	PF25173	128 - 288	5.4e-30	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	128 - 285	1.6e-27	Prp19 WD40 domain
Beta-prop_WDR90_POC16_2nd	PF23393	128 - 203	2.9e-06	WDR90/POC16, second beta-propeller
WD40_WDHD1_1st	PF24817	130 - 184	4.4e-07	WDHD1 first WD40 domain
WDR55	PF24796	133 - 288	7.4e-13	WDR55
Beta-prop_TEP1_2nd	PF25047	134 - 262	2.3e-10	TEP-1 second beta-propeller
Beta-prop_WDR3_2nd	PF25172	135 - 219	5.5e-10	WDR3 second beta-propeller domain
WD40	PF00400	135 - 172	1.8e-08	WD domain, G-beta repeat
WD40_MABP1-WDR62_2nd	PF24782	140 - 215	9.6e-06	MABP1/WDR62 second WD40 domain
Beta-prop_EML	PF23409	141 - 259	7.3e-08	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR36-Utp21_1st	PF25171	162 - 265	2.8e-10	WDR36/Utp21 first beta-propeller
Beta-prop_WDR75_1st	PF23869	167 - 224	3.6e-06	WD repeat-containing protein 75 first beta-propeller
WD40	PF00400	178 - 214	1.6e-12	WD domain, G-beta repeat
Beta-prop_CAF1B_HIR1	PF24105	180 - 260	8.2e-08	CAF1B/HIR1 beta-propeller domain
EIF3I	PF24805	183 - 287	1.6e-10	EIF3I
ANAPC4_WD40	PF12894	184 - 237	3e-06	Anaphase-promoting complex subunit 4 WD40 domain
WD40_WDHD1_1st	PF24817	186 - 260	3e-09	WDHD1 first WD40 domain
WD40_Gbeta	PF25391	195 - 289	1.2e-09	G protein beta WD-40 repeat protein
Beta-prop_EML_2	PF23414	201 - 288	1.5e-08	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR90_POC16_2nd	PF23393	206 - 286	7.9e-10	WDR90/POC16, second beta-propeller
Beta-prop_THOC3	PF25174	220 - 286	3.7e-07	THOC3 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0005168)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g22470
rosa_chinensis	RchiOBHm_Chr4g0385821 RchiOBHm_Chr4g0393181 RchiOBHm_Chr4g0393191 RchiOBHm_Chr6g0274801 RchiOBHm_Chr7g0189981 RchiOBHm_Chr7g0189991
rosa_laevigata	RLG00000004572
rosa_multiflora	Rmu_sc0000365.1_g000052 Rmu_sc0000365.1_g000053 Rmu_sc0000827.1_g000018 Rmu_sc0001251.1_g000022 Rmu_sc0001266.1_g000003 Rmu_sc0001879.1_g000042 Rmu_sc0003069.1_g000022 Rmu_sc0004886.1_g000002 Rmu_sc0005120.1_g000011 Rmu_sc0005120.1_g000012 Rmu_sc0006153.1_g000015 Rmu_sc0014668.1_g000003
rosa_roxburghii	Rroxscaffold_1G00049180 Rroxscaffold_3G00241490 Rroxscaffold_3G00262780 Rroxscaffold_4G00276460 Rroxscaffold_4G00302780 Rroxscaffold_5G00359090 Rroxscaffold_5G00369400 Rroxscaffold_7G00165260
rosa_samantha	Rh6AG039900 Rh7CG111700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	450, 2615
AccIII	TCCGGA	1 cut(s)	838
AclWI	GGATC	2 cut(s)	648, 774
AcvI	CACGTG	1 cut(s)	1117
AdeI	CACNNNGTG	1 cut(s)	1297
AfaI	GTAC	6 cut(s)	1220, 1539, 1572, 1665, 2175, 2313
AfiI	CCNNNNNNNGG	1 cut(s)	384
AflIII	ACRYGT	3 cut(s)	1116, 1303, 2316
AgsI	TTSAA	9 cut(s)	152, 773, 1200, 1242, 1289, 1499, 1693, 2394, 2728
AhdI	GACNNNNNGTC	1 cut(s)	834
AhlI	ACTAGT	1 cut(s)	80
AjnI	CCWGG	2 cut(s)	489, 904
AjuI	GAANNNNNNNTTGG	4 cut(s)	1982, 2014, 2132, 2164
Alw21I	GWGCWC	3 cut(s)	1340, 1488, 2509
Alw26I	GTCTC	7 cut(s)	294, 800, 915, 1389, 1997, 2591, 2710
Alw44I	GTGCAC	2 cut(s)	1484, 2505
AlwI	GGATC	2 cut(s)	648, 774
Aor13HI	TCCGGA	1 cut(s)	838
AoxI	GGCC	4 cut(s)	273, 550, 685, 2075
ApaLI	GTGCAC	2 cut(s)	1484, 2505
ApeKI	GCWGC	5 cut(s)	163, 1715, 1819, 2044, 2749
Asp700I	GAANNNNTTC	2 cut(s)	2144, 2334
AspS9I	GGNCC	5 cut(s)	249, 273, 685, 800, 2075
AsuC2I	CCSGG	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	1052, 1742
AvaII	GGWCC	2 cut(s)	249, 800
BaeGI	GKGCMC	3 cut(s)	1116, 1488, 2509
BaeI	ACNNNNGTAYC	2 cut(s)	1554, 1587
BanII	GRGCYC	2 cut(s)	853, 1126
BarI	GAAGNNNNNNTAC	4 cut(s)	1647, 1679, 2322, 2354
BauI	CACGAG	1 cut(s)	1566
BbrPI	CACGTG	1 cut(s)	1117
BbsI	GAAGAC	1 cut(s)	951
Bbv12I	GWGCWC	3 cut(s)	1340, 1488, 2509
BbvCI	CCTCAGC	1 cut(s)	72
BbvI	GCAGC	5 cut(s)	175, 1702, 1831, 2031, 2736
BciT130I	CCWGG	2 cut(s)	491, 906
BciVI	GTATCC	1 cut(s)	2537
BclI	TGATCA	1 cut(s)	1747
BcnI	CCSGG	1 cut(s)	253
BcoDI	GTCTC	7 cut(s)	294, 800, 915, 1389, 1997, 2591, 2710
BcuI	ACTAGT	1 cut(s)	80
BfaI	CTAG	5 cut(s)	81, 1646, 1979, 2105, 2711
BfmI	CTRYAG	2 cut(s)	1854, 2532
BfuI	GTATCC	1 cut(s)	2537
BglI	GCCNNNNNGGC	1 cut(s)	281
BglII	AGATCT	1 cut(s)	431
BisI	GCNGC	5 cut(s)	164, 1716, 1820, 2045, 2750
BlpI	GCTNAGC	2 cut(s)	793, 1823
BlsI	GCNGC	5 cut(s)	165, 1717, 1821, 2046, 2751
Bme1390I	CCNGG	3 cut(s)	253, 491, 906
Bme18I	GGWCC	2 cut(s)	249, 800
BmeRI	GACNNNNNGTC	1 cut(s)	834
BmgT120I	GGNCC	5 cut(s)	249, 273, 685, 800, 2075
BmiI	GGNNCC	5 cut(s)	285, 487, 1588, 2076, 2292
BmrFI	CCNGG	3 cut(s)	253, 491, 906
BmrI	ACTGGG	1 cut(s)	991
BmsI	GCATC	7 cut(s)	229, 331, 488, 1159, 1441, 1587, 2107
BmuI	ACTGGG	1 cut(s)	991
BpiI	GAAGAC	1 cut(s)	951
BpmI	CTGGAG	1 cut(s)	834
Bpu10I	CCTNAGC	1 cut(s)	72
Bpu1102I	GCTNAGC	2 cut(s)	793, 1823
BpuEI	CTTGAG	5 cut(s)	131, 1590, 1822, 2102, 2449
BpuMI	CCSGG	1 cut(s)	253
BsaAI	YACGTR	1 cut(s)	1117
BsaBI	GATNNNNATC	1 cut(s)	1041
BsaI	GGTCTC	2 cut(s)	1997, 2591
BsaJI	CCNNGG	5 cut(s)	489, 1590, 1674, 1828, 2007
BsaWI	WCCGGW	1 cut(s)	838
Bsc4I	CCNNNNNNNGG	1 cut(s)	384
Bse1I	ACTGG	5 cut(s)	427, 817, 997, 1411, 2623
Bse3DI	GCAATG	1 cut(s)	120
Bse8I	GATNNNNATC	1 cut(s)	1041
BseAI	TCCGGA	1 cut(s)	838
BseBI	CCWGG	2 cut(s)	491, 906
BseDI	CCNNGG	5 cut(s)	489, 1590, 1674, 1828, 2007
BseJI	GATNNNNATC	1 cut(s)	1041
BseLI	CCNNNNNNNGG	1 cut(s)	384
BseMI	GCAATG	1 cut(s)	120
BseMII	CTCAG	8 cut(s)	63, 237, 795, 807, 1139, 1837, 2498, 2841
BseNI	ACTGG	5 cut(s)	427, 817, 997, 1411, 2623
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	3 cut(s)	1116, 1488, 2509
BseXI	GCAGC	5 cut(s)	175, 1702, 1831, 2031, 2736
BsgI	GTGCAG	1 cut(s)	996
BshFI	GGCC	4 cut(s)	275, 552, 687, 2077
BsiHKAI	GWGCWC	3 cut(s)	1340, 1488, 2509
BsiSI	CCGG	2 cut(s)	252, 839
BslFI	GGGAC	4 cut(s)	146, 763, 1314, 2397
BslI	CCNNNNNNNGG	1 cut(s)	384
BsmAI	GTCTC	7 cut(s)	294, 800, 915, 1389, 1997, 2591, 2710
BsmFI	GGGAC	4 cut(s)	146, 763, 1314, 2397
BsmI	GAATGC	3 cut(s)	294, 2240, 2397
BsnI	GGCC	4 cut(s)	275, 552, 687, 2077
Bso31I	GGTCTC	2 cut(s)	1997, 2591
Bsp1286I	GDGCHC	6 cut(s)	853, 1116, 1126, 1340, 1488, 2509
Bsp13I	TCCGGA	1 cut(s)	838
Bsp143I	GATC	8 cut(s)	431, 640, 766, 961, 1042, 1090, 1747, 2575
Bsp1720I	GCTNAGC	2 cut(s)	793, 1823
Bsp19I	CCATGG	3 cut(s)	1590, 1828, 2007
BspANI	GGCC	4 cut(s)	275, 552, 687, 2077
BspCNI	CTCAG	8 cut(s)	64, 236, 796, 806, 1140, 1836, 2497, 2840
BspEI	TCCGGA	1 cut(s)	838
BspHI	TCATGA	6 cut(s)	873, 937, 964, 1519, 1872, 2232
BspLI	GGNNCC	5 cut(s)	285, 487, 1588, 2076, 2292
BspPI	GGATC	2 cut(s)	648, 774
BspQI	GCTCTTC	2 cut(s)	1345, 2340
BspTNI	GGTCTC	2 cut(s)	1997, 2591
BsrDI	GCAATG	1 cut(s)	120
BsrI	ACTGG	5 cut(s)	427, 817, 997, 1411, 2623
BssECI	CCNNGG	5 cut(s)	489, 1590, 1674, 1828, 2007
BssMI	GATC	8 cut(s)	431, 640, 766, 961, 1042, 1090, 1747, 2575
BssNAI	GTATAC	1 cut(s)	2616
BssSI	CACGAG	1 cut(s)	1566
BssT1I	CCWWGG	4 cut(s)	1590, 1674, 1828, 2007
Bst1107I	GTATAC	1 cut(s)	2616
Bst2BI	CACGAG	1 cut(s)	1566
Bst2UI	CCWGG	2 cut(s)	491, 906
Bst4CI	ACNGT	5 cut(s)	204, 628, 1458, 1639, 2642
Bst6I	CTCTTC	4 cut(s)	59, 556, 1345, 2340
BstAPI	GCANNNNNTGC	1 cut(s)	2697
BstBAI	YACGTR	1 cut(s)	1117
BstC8I	GCNNGC	5 cut(s)	902, 1015, 1602, 1623, 1795
BstDEI	CTNAG	9 cut(s)	72, 126, 223, 793, 804, 1148, 1823, 2484, 2827
BstDSI	CCRYGG	3 cut(s)	1590, 1828, 2007
BstKTI	GATC	8 cut(s)	434, 643, 769, 964, 1045, 1093, 1750, 2578
BstMAI	GTCTC	7 cut(s)	294, 800, 915, 1389, 1997, 2591, 2710
BstMBI	GATC	8 cut(s)	431, 640, 766, 961, 1042, 1090, 1747, 2575
BstMWI	GCNNNNNNNGC	5 cut(s)	272, 281, 1601, 2670, 2697
BstNI	CCWGG	2 cut(s)	491, 906
BstNSI	RCATGY	4 cut(s)	955, 1307, 1625, 2320
BstSCI	CCNGG	3 cut(s)	251, 489, 904
BstSFI	CTRYAG	2 cut(s)	1854, 2532
BstSLI	GKGCMC	3 cut(s)	1116, 1488, 2509
BstV1I	GCAGC	5 cut(s)	175, 1702, 1831, 2031, 2736
BstV2I	GAAGAC	1 cut(s)	951
BstX2I	RGATCY	3 cut(s)	431, 640, 766
BstXI	CCANNNNNNTGG	4 cut(s)	464, 956, 1013, 2184
BstYI	RGATCY	3 cut(s)	431, 640, 766
BstZ17I	GTATAC	1 cut(s)	2616
BsuI	GTATCC	1 cut(s)	2537
BsuRI	GGCC	4 cut(s)	275, 552, 687, 2077
BtgI	CCRYGG	3 cut(s)	1590, 1828, 2007
BtgZI	GCGATG	1 cut(s)	1610
BtsI	GCAGTG	1 cut(s)	1917
BtsIMutI	CAGTG	4 cut(s)	109, 624, 1917, 2692
Cac8I	GCNNGC	5 cut(s)	902, 1015, 1602, 1623, 1795
CciI	TCATGA	6 cut(s)	873, 937, 964, 1519, 1872, 2232
Cfr13I	GGNCC	5 cut(s)	249, 273, 685, 800, 2075
Csp6I	GTAC	6 cut(s)	1219, 1538, 1571, 1664, 2174, 2312
CspCI	CAANNNNNGTGG	2 cut(s)	2668, 2703
CviQI	GTAC	6 cut(s)	1219, 1538, 1571, 1664, 2174, 2312
DdeI	CTNAG	9 cut(s)	72, 126, 223, 793, 804, 1148, 1823, 2484, 2827
DpnI	GATC	8 cut(s)	433, 642, 768, 963, 1044, 1092, 1749, 2577
DpnII	GATC	8 cut(s)	431, 640, 766, 961, 1042, 1090, 1747, 2575
DraI	TTTAAA	3 cut(s)	504, 673, 2062
DraIII	CACNNNGTG	1 cut(s)	1297
DriI	GACNNNNNGTC	1 cut(s)	834
Eam1104I	CTCTTC	4 cut(s)	59, 556, 1345, 2340
Eam1105I	GACNNNNNGTC	1 cut(s)	834
EarI	CTCTTC	4 cut(s)	59, 556, 1345, 2340
Eco130I	CCWWGG	4 cut(s)	1590, 1674, 1828, 2007
Eco24I	GRGCYC	2 cut(s)	853, 1126
Eco31I	GGTCTC	2 cut(s)	1997, 2591
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	2 cut(s)	249, 800
Eco72I	CACGTG	1 cut(s)	1117
EcoRII	CCWGG	2 cut(s)	489, 904
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	4 cut(s)	1590, 1674, 1828, 2007
EcoT22I	ATGCAT	1 cut(s)	701
EcoT38I	GRGCYC	2 cut(s)	853, 1126
ErhI	CCWWGG	4 cut(s)	1590, 1674, 1828, 2007
FalI	AAGNNNNNCTT	2 cut(s)	2132, 2164
FaqI	GGGAC	4 cut(s)	146, 763, 1314, 2397
FauNDI	CATATG	3 cut(s)	2049, 2656, 2755
FbaI	TGATCA	1 cut(s)	1747
FblI	GTMKAC	2 cut(s)	450, 2615
Fnu4HI	GCNGC	5 cut(s)	164, 1716, 1820, 2045, 2750
FriOI	GRGCYC	2 cut(s)	853, 1126
Fsp4HI	GCNGC	5 cut(s)	164, 1716, 1820, 2045, 2750
FspBI	CTAG	5 cut(s)	81, 1646, 1979, 2105, 2711
GluI	GCNGC	5 cut(s)	164, 1716, 1820, 2045, 2750
GsuI	CTGGAG	1 cut(s)	834
HaeIII	GGCC	4 cut(s)	275, 552, 687, 2077
HapII	CCGG	2 cut(s)	252, 839
HincII	GTYRAC	2 cut(s)	451, 1180
HindII	GTYRAC	2 cut(s)	451, 1180
HindIII	AAGCTT	2 cut(s)	1280, 2141
HpaII	CCGG	2 cut(s)	252, 839
HphI	GGTGA	2 cut(s)	1052, 1742
Hpy188I	TCNGA	9 cut(s)	226, 349, 379, 645, 1095, 1788, 1966, 2628, 2830
HpyAV	CCTTC	7 cut(s)	146, 221, 240, 264, 520, 1137, 2182
HpyCH4III	ACNGT	5 cut(s)	204, 628, 1458, 1639, 2642
HpyCH4IV	ACGT	4 cut(s)	373, 595, 1116, 1334
HpyF10VI	GCNNNNNNNGC	5 cut(s)	272, 281, 1601, 2670, 2697
HpyF3I	CTNAG	9 cut(s)	72, 126, 223, 793, 804, 1148, 1823, 2484, 2827
HpySE526I	ACGT	4 cut(s)	373, 595, 1116, 1334
Kpn2I	TCCGGA	1 cut(s)	838
Ksp22I	TGATCA	1 cut(s)	1747
Kzo9I	GATC	8 cut(s)	431, 640, 766, 961, 1042, 1090, 1747, 2575
LguI	GCTCTTC	2 cut(s)	1345, 2340
LmnI	GCTCC	3 cut(s)	160, 289, 491
Lsp1109I	GCAGC	5 cut(s)	175, 1702, 1831, 2031, 2736
LweI	GCATC	7 cut(s)	229, 331, 488, 1159, 1441, 1587, 2107
MaeI	CTAG	5 cut(s)	81, 1646, 1979, 2105, 2711
MaeII	ACGT	4 cut(s)	373, 595, 1116, 1334
MaeIII	GTNAC	5 cut(s)	425, 982, 1732, 1897, 2527
MalI	GATC	8 cut(s)	433, 642, 768, 963, 1044, 1092, 1749, 2577
MboI	GATC	8 cut(s)	431, 640, 766, 961, 1042, 1090, 1747, 2575
MfeI	CAATTG	4 cut(s)	1616, 1944, 2265, 2552
MflI	RGATCY	3 cut(s)	431, 640, 766
MhlI	GDGCHC	6 cut(s)	853, 1116, 1126, 1340, 1488, 2509
MlyI	GAGTC	6 cut(s)	309, 573, 979, 2419, 2623, 2819
MmeI	TCCRAC	2 cut(s)	223, 1993
Mph1103I	ATGCAT	1 cut(s)	701
MroI	TCCGGA	1 cut(s)	838
MroXI	GAANNNNTTC	2 cut(s)	2144, 2334
MseI	TTAA	9 cut(s)	503, 672, 888, 1020, 1932, 2022, 2061, 2478, 2738
MslI	CAYNNNNRTG	5 cut(s)	714, 1314, 1595, 1626, 2502
MspA1I	CMGCKG	1 cut(s)	797
MspI	CCGG	2 cut(s)	252, 839
MspR9I	CCNGG	3 cut(s)	253, 491, 906
MunI	CAATTG	4 cut(s)	1616, 1944, 2265, 2552
Mva1269I	GAATGC	3 cut(s)	294, 2240, 2397
MvaI	CCWGG	2 cut(s)	491, 906
MwoI	GCNNNNNNNGC	5 cut(s)	272, 281, 1601, 2670, 2697
NciI	CCSGG	1 cut(s)	253
NcoI	CCATGG	3 cut(s)	1590, 1828, 2007
NdeI	CATATG	3 cut(s)	2049, 2656, 2755
NdeII	GATC	8 cut(s)	431, 640, 766, 961, 1042, 1090, 1747, 2575
NlaIV	GGNNCC	5 cut(s)	285, 487, 1588, 2076, 2292
NmuCI	GTSAC	4 cut(s)	425, 982, 1732, 1897
NsiI	ATGCAT	1 cut(s)	701
NspI	RCATGY	4 cut(s)	955, 1307, 1625, 2320
PaeI	GCATGC	1 cut(s)	1625
PagI	TCATGA	6 cut(s)	873, 937, 964, 1519, 1872, 2232
PciI	ACATGT	2 cut(s)	1303, 2316
PciSI	GCTCTTC	2 cut(s)	1345, 2340
PctI	GAATGC	3 cut(s)	294, 2240, 2397
PdmI	GAANNNNTTC	2 cut(s)	2144, 2334
PfeI	GAWTC	4 cut(s)	934, 1064, 1516, 2780
PkrI	GCNGC	5 cut(s)	165, 1717, 1821, 2046, 2751
PleI	GAGTC	6 cut(s)	309, 572, 979, 2418, 2623, 2819
PmaCI	CACGTG	1 cut(s)	1117
PmlI	CACGTG	1 cut(s)	1117
PpsI	GAGTC	6 cut(s)	309, 572, 979, 2418, 2623, 2819
Ppu21I	YACGTR	1 cut(s)	1117
PscI	ACATGT	2 cut(s)	1303, 2316
Psp6I	CCWGG	2 cut(s)	489, 904
PspCI	CACGTG	1 cut(s)	1117
PspGI	CCWGG	2 cut(s)	489, 904
PspN4I	GGNNCC	5 cut(s)	285, 487, 1588, 2076, 2292
PspPI	GGNCC	5 cut(s)	249, 273, 685, 800, 2075
PsuI	RGATCY	3 cut(s)	431, 640, 766
PvuII	CAGCTG	1 cut(s)	797
RsaI	GTAC	6 cut(s)	1220, 1539, 1572, 1665, 2175, 2313
RsaNI	GTAC	6 cut(s)	1219, 1538, 1571, 1664, 2174, 2312
RseI	CAYNNNNRTG	5 cut(s)	714, 1314, 1595, 1626, 2502
SalI	GTCGAC	1 cut(s)	449
SapI	GCTCTTC	2 cut(s)	1345, 2340
SaqAI	TTAA	9 cut(s)	503, 672, 888, 1020, 1932, 2022, 2061, 2478, 2738
SatI	GCNGC	5 cut(s)	164, 1716, 1820, 2045, 2750
Sau3AI	GATC	8 cut(s)	431, 640, 766, 961, 1042, 1090, 1747, 2575
Sau96I	GGNCC	5 cut(s)	249, 273, 685, 800, 2075
SchI	GAGTC	6 cut(s)	309, 573, 979, 2419, 2623, 2819
ScrFI	CCNGG	3 cut(s)	253, 491, 906
SduI	GDGCHC	6 cut(s)	853, 1116, 1126, 1340, 1488, 2509
SfaNI	GCATC	7 cut(s)	229, 331, 488, 1159, 1441, 1587, 2107
SfcI	CTRYAG	2 cut(s)	1854, 2532
SinI	GGWCC	2 cut(s)	249, 800
SmiMI	CAYNNNNRTG	5 cut(s)	714, 1314, 1595, 1626, 2502
SmlI	CTYRAG	5 cut(s)	110, 1605, 1801, 2081, 2428
SmoI	CTYRAG	5 cut(s)	110, 1605, 1801, 2081, 2428
SpeI	ACTAGT	1 cut(s)	80
SphI	GCATGC	1 cut(s)	1625
SspI	AATATT	1 cut(s)	2745
SspMI	CTAG	5 cut(s)	81, 1646, 1979, 2105, 2711
StyD4I	CCNGG	3 cut(s)	251, 489, 904
StyI	CCWWGG	4 cut(s)	1590, 1674, 1828, 2007
TaaI	ACNGT	5 cut(s)	204, 628, 1458, 1639, 2642
TaiI	ACGT	4 cut(s)	376, 598, 1119, 1337
TaqI	TCGA	5 cut(s)	60, 207, 298, 450, 2247
TaqII	GACCGA	1 cut(s)	2615
TatI	WGTACW	1 cut(s)	2311
TfiI	GAWTC	4 cut(s)	934, 1064, 1516, 2780
Tru1I	TTAA	9 cut(s)	503, 672, 888, 1020, 1932, 2022, 2061, 2478, 2738
Tru9I	TTAA	9 cut(s)	503, 672, 888, 1020, 1932, 2022, 2061, 2478, 2738
TscAI	CASTG	4 cut(s)	109, 631, 1924, 2692
TseFI	GTSAC	4 cut(s)	425, 982, 1732, 1897
TseI	GCWGC	5 cut(s)	163, 1715, 1819, 2044, 2749
Tsp45I	GTSAC	4 cut(s)	425, 982, 1732, 1897
TspRI	CASTG	4 cut(s)	109, 631, 1924, 2692
VneI	GTGCAC	2 cut(s)	1484, 2505
VpaK11BI	GGWCC	2 cut(s)	249, 800
XbaI	TCTAGA	2 cut(s)	1645, 1978
XceI	RCATGY	4 cut(s)	955, 1307, 1625, 2320
XcmI	CCANNNNNNNNNTGG	2 cut(s)	594, 2640
XmiI	GTMKAC	2 cut(s)	450, 2615
XmnI	GAANNNNTTC	2 cut(s)	2144, 2334
XspI	CTAG	5 cut(s)	81, 1646, 1979, 2105, 2711
Zsp2I	ATGCAT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.