RchiOBHm_Chr7g0189981

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0005168
Physical Location & Seq
Forward (+)
9249268 .. 9249977
710 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16968

Sequence Viewer

Length: 690 bp
ATGGAATCAATCAATATATCGAGTTATTTCCTTTCTTCTTGTTTACTTCTCTTAGTTTTTCTCTGCAATCTTACCATGGTTAGGGCTCCTACCCTAACAACTGGTATCAGAGCCCACATCATAGGGCCGAGGGGCGCTGGGAATCCACCACCATGCTCGTCAACACCTCCGCGTCCACCTGACCTAGAGGAAGTCAGGAGGAAGAGGATCCAAATCGCGAGAGAACAGGCAGCTGAACATGCAGTTGCGTGGTGCCGTGAACTCGAGAAAACTATGGCGTCGTTCAAGTCCGAGTTTCTAAACGAGTTGAGGCAATTTCGATTGGAGCTCATAACTTCGGTGATGGAGCAGTCGGTGCTAACTTCTTCCGTACCAATCATATCCCTACGAGTGACTCAGTCTGTCTCTTCGGGGCTGCAATTTGGGACCATCGAATCTTACAAACCGCCACCACCACCACAGGCCATGGTGGATCCATACCCTTACCAACAGCAAGAACCGTCACCTCCGTCTCGGTCTAGACCACCAGTCCCTCAGCCGCAGCACGCGGATCCCTACGGTTACGAGCTGCAACAACCGCCACCTCCGCCAACTAGACCATTAGTCCCCGTCCATGCGTTGGGTGAGTCACCATCCCCAGCCCACATGAGGTACACCCACCACTCGCTCTCAAATGGTGATTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

229

Amino Acids

25.46

Weight (kDa)

7.05

Isoelectric Point (pI)

72.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 252
AccB7I CCANNNNNTGG 1 cut(s) 619
AccII CGCG 3 cut(s) 172, 218, 548
AciI CCGC 6 cut(s) 170, 446, 539, 548, 578, 587
AclWI GGATC 6 cut(s) 202, 215, 467, 480, 545, 558
AcyI GRCGYC 1 cut(s) 278
AfaI GTAC 2 cut(s) 372, 653
AfiI CCNNNNNNNGG 3 cut(s) 81, 619, 648
AgsI TTSAA 1 cut(s) 286
AhdI GACNNNNNGTC 2 cut(s) 527, 602
AluBI AGCT 3 cut(s) 233, 328, 568
AluI AGCT 3 cut(s) 233, 328, 568
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 2 cut(s) 409, 516
AlwI GGATC 6 cut(s) 202, 215, 467, 480, 545, 558
Ama87I CYCGRG 1 cut(s) 263
AoxI GGCC 2 cut(s) 125, 462
ApeKI GCWGC 4 cut(s) 230, 415, 541, 568
AspLEI GCGC 1 cut(s) 137
AspS9I GGNCC 2 cut(s) 125, 426
AsuHPI GGTGA 5 cut(s) 352, 495, 621, 635, 689
AvaI CYCGRG 1 cut(s) 263
AvaII GGWCC 1 cut(s) 426
BamHI GGATCC 3 cut(s) 207, 472, 550
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 3 cut(s) 88, 115, 330
Bbv12I GWGCWC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 534
BbvI GCAGC 4 cut(s) 242, 402, 553, 555
BccI CCATC 3 cut(s) 337, 437, 640
BceAI ACGGC 1 cut(s) 240
BcoDI GTCTC 2 cut(s) 409, 516
BfaI CTAG 3 cut(s) 185, 519, 594
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 5 cut(s) 231, 416, 539, 542, 569
BlsI GCNGC 5 cut(s) 232, 417, 540, 543, 570
Bme18I GGWCC 1 cut(s) 426
BmeRI GACNNNNNGTC 2 cut(s) 527, 602
BmeT110I CYCGRG 1 cut(s) 263
BmgT120I GGNCC 2 cut(s) 125, 426
BmiI GGNNCC 6 cut(s) 87, 209, 254, 427, 474, 552
Bpu10I CCTNAGC 1 cut(s) 534
BsaBI GATNNNNATC 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 278
BsaJI CCNNGG 3 cut(s) 75, 128, 465
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 619, 648
Bse1I ACTGG 2 cut(s) 106, 527
Bse8I GATNNNNATC 1 cut(s) 212
BseDI CCNNGG 3 cut(s) 75, 128, 465
BseGI GGATG 1 cut(s) 632
BseJI GATNNNNATC 1 cut(s) 212
BseLI CCNNNNNNNGG 3 cut(s) 81, 619, 648
BseMII CTCAG 2 cut(s) 410, 548
BseNI ACTGG 2 cut(s) 106, 527
BseXI GCAGC 4 cut(s) 242, 402, 553, 555
BseYI CCCAGC 2 cut(s) 137, 637
Bsh1236I CGCG 3 cut(s) 172, 218, 548
BshFI GGCC 2 cut(s) 127, 464
BshNI GGYRCC 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 263
BslFI GGGAC 3 cut(s) 439, 515, 590
BslI CCNNNNNNNGG 3 cut(s) 81, 619, 648
BsmAI GTCTC 2 cut(s) 409, 516
BsmBI CGTCTC 1 cut(s) 516
BsmFI GGGAC 3 cut(s) 439, 515, 590
BsnI GGCC 2 cut(s) 127, 464
BsoBI CYCGRG 1 cut(s) 263
Bsp1286I GDGCHC 3 cut(s) 88, 115, 330
Bsp143I GATC 3 cut(s) 207, 472, 550
Bsp19I CCATGG 2 cut(s) 75, 465
Bsp68I TCGCGA 1 cut(s) 218
BspACI CCGC 6 cut(s) 170, 446, 539, 548, 578, 587
BspANI GGCC 2 cut(s) 127, 464
BspCNI CTCAG 2 cut(s) 409, 547
BspFNI CGCG 3 cut(s) 172, 218, 548
BspLI GGNNCC 6 cut(s) 87, 209, 254, 427, 474, 552
BspPI GGATC 6 cut(s) 202, 215, 467, 480, 545, 558
BspT107I GGYRCC 1 cut(s) 252
BsrI ACTGG 2 cut(s) 106, 527
BssECI CCNNGG 3 cut(s) 75, 128, 465
BssMI GATC 3 cut(s) 207, 472, 550
BssNI GRCGYC 1 cut(s) 278
BssT1I CCWWGG 2 cut(s) 75, 465
Bst4CI ACNGT 2 cut(s) 501, 560
Bst6I CTCTTC 2 cut(s) 197, 412
BstACI GRCGYC 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 355
BstC8I GCNNGC 1 cut(s) 546
BstDEI CTNAG 3 cut(s) 52, 396, 534
BstDSI CCRYGG 2 cut(s) 75, 465
BstF5I GGATG 1 cut(s) 632
BstFNI CGCG 3 cut(s) 172, 218, 548
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 1 cut(s) 137
BstKTI GATC 3 cut(s) 210, 475, 553
BstMAI GTCTC 2 cut(s) 409, 516
BstMBI GATC 3 cut(s) 207, 472, 550
BstMWI GCNNNNNNNGC 4 cut(s) 239, 355, 577, 586
BstNSI RCATGY 1 cut(s) 242
BstUI CGCG 3 cut(s) 172, 218, 548
BstV1I GCAGC 4 cut(s) 242, 402, 553, 555
BstX2I RGATCY 3 cut(s) 207, 472, 550
BstYI RGATCY 3 cut(s) 207, 472, 550
BsuRI GGCC 2 cut(s) 127, 464
BtgI CCRYGG 2 cut(s) 75, 465
BtsCI GGATG 1 cut(s) 632
BtuMI TCGCGA 1 cut(s) 218
Cac8I GCNNGC 1 cut(s) 546
CfoI GCGC 1 cut(s) 137
Cfr13I GGNCC 2 cut(s) 125, 426
CseI GACGC 2 cut(s) 161, 267
Csp6I GTAC 2 cut(s) 371, 652
CviAII CATG 6 cut(s) 76, 153, 239, 466, 614, 646
CviQI GTAC 2 cut(s) 371, 652
DdeI CTNAG 3 cut(s) 52, 396, 534
DpnI GATC 3 cut(s) 209, 474, 552
DpnII GATC 3 cut(s) 207, 472, 550
DriI GACNNNNNGTC 2 cut(s) 527, 602
Eam1104I CTCTTC 2 cut(s) 197, 412
Eam1105I GACNNNNNGTC 2 cut(s) 527, 602
EarI CTCTTC 2 cut(s) 197, 412
EciI GGCGGA 1 cut(s) 576
Ecl136II GAGCTC 1 cut(s) 328
Eco130I CCWWGG 2 cut(s) 75, 465
Eco24I GRGCYC 3 cut(s) 88, 115, 330
Eco47I GGWCC 1 cut(s) 426
Eco53kI GAGCTC 1 cut(s) 328
Eco88I CYCGRG 1 cut(s) 263
EcoICRI GAGCTC 1 cut(s) 328
EcoT14I CCWWGG 2 cut(s) 75, 465
EcoT38I GRGCYC 3 cut(s) 88, 115, 330
ErhI CCWWGG 2 cut(s) 75, 465
Esp3I CGTCTC 1 cut(s) 516
FaeI CATG 6 cut(s) 79, 156, 242, 469, 617, 649
FaqI GGGAC 3 cut(s) 439, 515, 590
FatI CATG 6 cut(s) 75, 152, 238, 465, 613, 645
Fnu4HI GCNGC 5 cut(s) 231, 416, 539, 542, 569
FokI GGATG 1 cut(s) 619
FriOI GRGCYC 3 cut(s) 88, 115, 330
Fsp4HI GCNGC 5 cut(s) 231, 416, 539, 542, 569
FspBI CTAG 3 cut(s) 185, 519, 594
GlaI GCGC 1 cut(s) 136
GluI GCNGC 5 cut(s) 231, 416, 539, 542, 569
GsaI CCCAGC 2 cut(s) 141, 641
HaeII RGCGCY 1 cut(s) 138
HaeIII GGCC 2 cut(s) 127, 464
HgaI GACGC 2 cut(s) 161, 267
HhaI GCGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 278
Hin1II CATG 6 cut(s) 79, 156, 242, 469, 617, 649
Hin6I GCGC 1 cut(s) 135
HinP1I GCGC 1 cut(s) 135
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HinfI GANTC 5 cut(s) 5, 142, 394, 434, 626
HphI GGTGA 5 cut(s) 352, 495, 621, 635, 689
Hpy166II GTNNAC 5 cut(s) 44, 162, 176, 260, 654
Hpy188I TCNGA 2 cut(s) 110, 292
Hpy188III TCNNGA 4 cut(s) 196, 217, 265, 519
Hpy8I GTNNAC 5 cut(s) 44, 162, 176, 260, 654
Hpy99I CGWCG 1 cut(s) 283
HpyCH4III ACNGT 2 cut(s) 501, 560
HpyCH4V TGCA 4 cut(s) 66, 242, 418, 571
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 355, 577, 586
HpyF3I CTNAG 3 cut(s) 52, 396, 534
Hsp92I GRCGYC 1 cut(s) 278
Hsp92II CATG 6 cut(s) 79, 156, 242, 469, 617, 649
HspAI GCGC 1 cut(s) 135
Kzo9I GATC 3 cut(s) 207, 472, 550
LmnI GCTCC 3 cut(s) 91, 325, 346
LpnPI CCDG 8 cut(s) 87, 123, 181, 192, 212, 446, 540, 651
Lsp1109I GCAGC 4 cut(s) 242, 402, 553, 555
MaeI CTAG 3 cut(s) 185, 519, 594
MaeIII GTNAC 4 cut(s) 391, 501, 560, 627
MalI GATC 3 cut(s) 209, 474, 552
MboI GATC 3 cut(s) 207, 472, 550
MboII GAAGA 4 cut(s) 27, 214, 357, 399
MflI RGATCY 3 cut(s) 207, 472, 550
MhlI GDGCHC 3 cut(s) 88, 115, 330
MluCI AATT 2 cut(s) 314, 419
MlyI GAGTC 2 cut(s) 388, 635
MslI CAYNNNNRTG 1 cut(s) 151
MspA1I CMGCKG 1 cut(s) 233
MvnI CGCG 3 cut(s) 172, 218, 548
MwoI GCNNNNNNNGC 4 cut(s) 239, 355, 577, 586
NcoI CCATGG 2 cut(s) 75, 465
NdeII GATC 3 cut(s) 207, 472, 550
NlaIII CATG 6 cut(s) 79, 156, 242, 469, 617, 649
NlaIV GGNNCC 6 cut(s) 87, 209, 254, 427, 474, 552
NmeAIII GCCGAG 1 cut(s) 153
NmuCI GTSAC 3 cut(s) 391, 501, 627
NruI TCGCGA 1 cut(s) 218
NspI RCATGY 1 cut(s) 242
PaeR7I CTCGAG 1 cut(s) 263
PfeI GAWTC 3 cut(s) 5, 142, 434
PflFI GACNNNGTC 1 cut(s) 397
PflMI CCANNNNNTGG 1 cut(s) 619
PkrI GCNGC 5 cut(s) 232, 417, 540, 543, 570
PleI GAGTC 2 cut(s) 388, 634
PpsI GAGTC 2 cut(s) 388, 634
Psp124BI GAGCTC 1 cut(s) 330
PspFI CCCAGC 2 cut(s) 137, 637
PspN4I GGNNCC 6 cut(s) 87, 209, 254, 427, 474, 552
PspPI GGNCC 2 cut(s) 125, 426
PsuI RGATCY 3 cut(s) 207, 472, 550
PsyI GACNNNGTC 1 cut(s) 397
PvuII CAGCTG 1 cut(s) 233
RruI TCGCGA 1 cut(s) 218
RsaI GTAC 2 cut(s) 372, 653
RsaNI GTAC 2 cut(s) 371, 652
RseI CAYNNNNRTG 1 cut(s) 151
SacI GAGCTC 1 cut(s) 330
SatI GCNGC 5 cut(s) 231, 416, 539, 542, 569
Sau3AI GATC 3 cut(s) 207, 472, 550
Sau96I GGNCC 2 cut(s) 125, 426
SchI GAGTC 2 cut(s) 388, 635
SduI GDGCHC 3 cut(s) 88, 115, 330
SetI ASST 9 cut(s) 169, 181, 186, 235, 330, 508, 570, 586, 653
Sfr274I CTCGAG 1 cut(s) 263
SinI GGWCC 1 cut(s) 426
SlaI CTCGAG 1 cut(s) 263
SmiMI CAYNNNNRTG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 263
SmoI CTYRAG 1 cut(s) 263
Sse9I AATT 2 cut(s) 314, 419
SsiI CCGC 6 cut(s) 170, 446, 539, 548, 578, 587
SspMI CTAG 3 cut(s) 185, 519, 594
SstI GAGCTC 1 cut(s) 330
StyI CCWWGG 2 cut(s) 75, 465
TaaI ACNGT 2 cut(s) 501, 560
TaqI TCGA 4 cut(s) 20, 264, 319, 432
TaqII GACCGA 1 cut(s) 504
TasI AATT 2 cut(s) 314, 419
TauI GCSGC 1 cut(s) 541
TfiI GAWTC 3 cut(s) 5, 142, 434
TseFI GTSAC 3 cut(s) 391, 501, 627
TseI GCWGC 4 cut(s) 230, 415, 541, 568
Tsp45I GTSAC 3 cut(s) 391, 501, 627
TspGWI ACGGA 2 cut(s) 358, 498
Tth111I GACNNNGTC 1 cut(s) 397
Van91I CCANNNNNTGG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 426
XbaI TCTAGA 1 cut(s) 518
XceI RCATGY 1 cut(s) 242
XhoI CTCGAG 1 cut(s) 263
XspI CTAG 3 cut(s) 185, 519, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.