RLG00000004572

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
60409690 .. 60410022
333 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004572

Sequence Viewer

Length: 333 bp
ATGCAAAGGGCTCCTGCACCTTCCCTTCAGCCTCCTCCACACACCCCCAACCCTCATGCCCACGGTTCTCTAGTGTTTGGGTTTATCCTGCTAGTTTATATATCCAGCGCATTATTATATTGGGTATTCTGCTTTATTATGACCTTTTTGAAAATGCCGGCTGCCGAGCAAGTTTTGGTGAGAGCAGCAGAGGAATCCGGCTGGGGCGGGAGGGCAGAGGGCAGTGCAAGAGCAAGGGGAGGCGCAAGAGCAGGGAGTGGGGGCTGCGGCGGGAGGGCAGAGGGCGGTGCAAGGGCGGCCGGCCATCATGAGAAACTGGAATATGCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.5

Weight (kDa)

9.23

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 207, 267, 270, 285, 296
AcoI YGGCCR 2 cut(s) 297, 301
AcuI CTGAAG 1 cut(s) 11
AgsI TTSAA 1 cut(s) 151
AoxI GGCC 2 cut(s) 297, 301
ApeKI GCWGC 3 cut(s) 161, 185, 264
AspLEI GCGC 2 cut(s) 110, 245
AsuHPI GGTGA 1 cut(s) 190
BanII GRGCYC 1 cut(s) 13
BbvI GCAGC 3 cut(s) 148, 197, 251
BccI CCATC 1 cut(s) 312
BfaI CTAG 2 cut(s) 71, 92
BisI GCNGC 5 cut(s) 162, 186, 265, 268, 297
BlsI GCNGC 5 cut(s) 163, 187, 266, 269, 298
BmiI GGNNCC 1 cut(s) 12
BsaJI CCNNGG 1 cut(s) 61
Bse118I RCCGGY 2 cut(s) 157, 299
Bse1I ACTGG 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 61
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 24
BseX3I CGGCCG 1 cut(s) 297
BseXI GCAGC 3 cut(s) 148, 197, 251
BseYI CCCAGC 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 300
BshFI GGCC 2 cut(s) 299, 303
BsiEI CGRYCG 1 cut(s) 300
BsiSI CCGG 3 cut(s) 158, 198, 300
BsnI GGCC 2 cut(s) 299, 303
Bsp1286I GDGCHC 1 cut(s) 13
BspACI CCGC 5 cut(s) 207, 267, 270, 285, 296
BspANI GGCC 2 cut(s) 299, 303
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 1 cut(s) 12
BsrFI RCCGGY 2 cut(s) 157, 299
BsrI ACTGG 1 cut(s) 321
BssAI RCCGGY 2 cut(s) 157, 299
BssECI CCNNGG 1 cut(s) 61
Bst4CI ACNGT 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 159, 301
BstDSI CCRYGG 1 cut(s) 61
BstHHI GCGC 2 cut(s) 110, 245
BstMCI CGRYCG 1 cut(s) 300
BstMWI GCNNNNNNNGC 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 148, 197, 251
BstZI CGGCCG 1 cut(s) 297
BsuRI GGCC 2 cut(s) 299, 303
BtgI CCRYGG 1 cut(s) 61
BtsI GCAGTG 1 cut(s) 229
BtsIMutI CAGTG 1 cut(s) 229
Cac8I GCNNGC 2 cut(s) 159, 301
CciI TCATGA 1 cut(s) 307
CfoI GCGC 2 cut(s) 110, 245
Cfr10I RCCGGY 2 cut(s) 157, 299
CviAII CATG 2 cut(s) 56, 308
CviJI RGCY 7 cut(s) 11, 31, 161, 201, 264, 299, 303
CviKI_1 RGCY 7 cut(s) 11, 31, 161, 201, 264, 299, 303
EaeI YGGCCR 2 cut(s) 297, 301
EagI CGGCCG 1 cut(s) 297
EclXI CGGCCG 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 13
Eco52I CGGCCG 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 11
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 2 cut(s) 59, 311
FaiI YATR 7 cut(s) 57, 99, 101, 118, 140, 309, 324
FatI CATG 2 cut(s) 55, 307
FauI CCCGC 2 cut(s) 200, 263
Fnu4HI GCNGC 5 cut(s) 162, 186, 265, 268, 297
FriOI GRGCYC 1 cut(s) 13
FseI GGCCGGCC 1 cut(s) 303
Fsp4HI GCNGC 5 cut(s) 162, 186, 265, 268, 297
FspBI CTAG 2 cut(s) 71, 92
GlaI GCGC 2 cut(s) 109, 244
GluI GCNGC 5 cut(s) 162, 186, 265, 268, 297
GsaI CCCAGC 1 cut(s) 205
HaeIII GGCC 2 cut(s) 299, 303
HapII CCGG 3 cut(s) 158, 198, 300
HhaI GCGC 2 cut(s) 110, 245
Hin1II CATG 2 cut(s) 59, 311
Hin6I GCGC 2 cut(s) 108, 243
HinP1I GCGC 2 cut(s) 108, 243
HinfI GANTC 1 cut(s) 194
HpaII CCGG 3 cut(s) 158, 198, 300
HphI GGTGA 1 cut(s) 190
Hpy188III TCNNGA 1 cut(s) 308
HpyAV CCTTC 2 cut(s) 30, 35
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 4, 17, 227, 290
HpyF10VI GCNNNNNNNGC 1 cut(s) 296
Hsp92II CATG 2 cut(s) 59, 311
HspAI GCGC 2 cut(s) 108, 243
KroI GCCGGC 2 cut(s) 157, 299
KroNI GCCGGC 2 cut(s) 159, 301
LmnI GCTCC 1 cut(s) 16
Lsp1109I GCAGC 3 cut(s) 148, 197, 251
MaeI CTAG 2 cut(s) 71, 92
MhlI GDGCHC 1 cut(s) 13
MnlI CCTC 9 cut(s) 42, 45, 63, 184, 204, 211, 233, 267, 274
MroNI GCCGGC 2 cut(s) 157, 299
MspI CCGG 3 cut(s) 158, 198, 300
MwoI GCNNNNNNNGC 1 cut(s) 296
NaeI GCCGGC 2 cut(s) 159, 301
NgoMIV GCCGGC 2 cut(s) 157, 299
NlaIII CATG 2 cut(s) 59, 311
NlaIV GGNNCC 1 cut(s) 12
NmeAIII GCCGAG 1 cut(s) 190
PagI TCATGA 1 cut(s) 307
PdiI GCCGGC 2 cut(s) 159, 301
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 5 cut(s) 163, 187, 266, 269, 298
PspFI CCCAGC 1 cut(s) 201
PspN4I GGNNCC 1 cut(s) 12
RigI GGCCGGCC 1 cut(s) 303
SatI GCNGC 5 cut(s) 162, 186, 265, 268, 297
SduI GDGCHC 1 cut(s) 13
SetI ASST 2 cut(s) 22, 146
SsiI CCGC 5 cut(s) 207, 267, 270, 285, 296
SspMI CTAG 2 cut(s) 71, 92
TaaI ACNGT 1 cut(s) 65
TauI GCSGC 2 cut(s) 270, 299
TfiI GAWTC 1 cut(s) 194
TscAI CASTG 1 cut(s) 229
TseI GCWGC 3 cut(s) 161, 185, 264
TspRI CASTG 1 cut(s) 229
XspI CTAG 2 cut(s) 71, 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.