Rh6AG039900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0005168
Physical Location & Seq
Forward (+)
5514322 .. 5515179
858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG039900.1

Sequence Viewer

Length: 858 bp
ATGTCAACAAGCTCCTCAATATCCACTGACCTTACTTCCTCAGATTACTCCGTTCACTCAAACCCTCAACCATACTCCTCCGATAACCACCACGGTATCAATCTTCCATTTACCCACCCTACAAATTCCCACCCTTACAATGTTGCTTCGATTTACCCCAACCCTCACCATCAATCACATAACCCACCAGTCAATTACCCTCACTCTGAACATCTTGAATCGTTTGTTTCCCACCATCACAGTCCGTACAAGGCTACCATTATCTCTCAGTCACCCTTGTCTTCCACATATGATAGTGTTTTCGGCAGCTCTCCTACAACCAAGAAGCTCAAATCGATTCGAGTGAACCAAAACCTGAGGACAAGGTCGCAAATAAAGATGAAGCGAAAACCCTTGTCTAAGTCCGCTCGACGCAGTCGAAAACGAATTCAGGGCGATTCAGAGACGGACAGCTGTGACCCTCTTTTGATTACGTCAACAAAACCCGATGATTTGGATGTGCCAGTTGAGACATCTCCTGCTTTCGCAACTGTGCTGATGGTTGCAGCTGTGACTGAGAAGCAAGATTTGAGTGTTCCTTTGATTAAGGTCATGCATTCCAAGGTTAATGGTTCATATCATGAATATGATTCGAGCTATCAACCTCCCTCTCCCACATCTGATGAGATAGAGACACCAAAGGGTCGAGAATTGGCTTTGGATGGGCTTTGGGATGCTAGTGGTGGATTGAACACCAAGAAGACTAAACTCAAGAGTTTCTCCCTTGGAGACTTTGAGCTGATTCATGATGAAGACCACATGCTTGAAGATCATGAGCAAAGTGCAATTGTGACTCAGTTTACCCAATTGTGCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

285

Amino Acids

31.73

Weight (kDa)

6.4

Isoelectric Point (pI)

60.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 407
AciI CCGC 1 cut(s) 405
AcsI RAATTY 2 cut(s) 124, 426
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 3 cut(s) 218, 730, 806
AluBI AGCT 7 cut(s) 12, 309, 328, 453, 548, 636, 778
AluI AGCT 7 cut(s) 12, 309, 328, 453, 548, 636, 778
Alw26I GTCTC 4 cut(s) 437, 503, 665, 762
ApeKI GCWGC 2 cut(s) 306, 545
ApoI RAATTY 2 cut(s) 124, 426
AsuHPI GGTGA 2 cut(s) 158, 264
AxyI CCTNAGG 1 cut(s) 356
BaeI ACNNNNGTAYC 2 cut(s) 79, 112
BbsI GAAGAC 3 cut(s) 273, 746, 798
BbvI GCAGC 2 cut(s) 318, 557
BccI CCATC 4 cut(s) 177, 243, 532, 695
BcoDI GTCTC 4 cut(s) 437, 503, 665, 762
BfaI CTAG 1 cut(s) 717
BisI GCNGC 2 cut(s) 307, 546
BlsI GCNGC 2 cut(s) 308, 547
BmsI GCATC 1 cut(s) 703
BpiI GAAGAC 3 cut(s) 273, 746, 798
BpuEI CTTGAG 1 cut(s) 734
Bsa29I ATCGAT 1 cut(s) 335
BsaJI CCNNGG 3 cut(s) 91, 600, 763
Bse1I ACTGG 2 cut(s) 188, 503
Bse21I CCTNAGG 1 cut(s) 356
BseCI ATCGAT 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 91, 600, 763
BseGI GGATG 3 cut(s) 502, 706, 718
BseMII CTCAG 5 cut(s) 54, 281, 347, 546, 848
BseNI ACTGG 2 cut(s) 188, 503
BseRI GAGGAG 2 cut(s) 4, 67
BseXI GCAGC 2 cut(s) 318, 557
BshVI ATCGAT 1 cut(s) 335
BsmAI GTCTC 4 cut(s) 437, 503, 665, 762
BsmBI CGTCTC 1 cut(s) 437
BsmI GAATGC 1 cut(s) 595
Bsp143I GATC 1 cut(s) 808
BspACI CCGC 1 cut(s) 405
BspCNI CTCAG 5 cut(s) 53, 280, 348, 547, 847
BspDI ATCGAT 1 cut(s) 335
BspHI TCATGA 3 cut(s) 619, 784, 811
BsrBI CCGCTC 1 cut(s) 407
BsrI ACTGG 2 cut(s) 188, 503
BssECI CCNNGG 3 cut(s) 91, 600, 763
BssMI GATC 1 cut(s) 808
BssT1I CCWWGG 2 cut(s) 600, 763
Bst4CI ACNGT 3 cut(s) 95, 242, 532
BstDEI CTNAG 6 cut(s) 40, 267, 356, 399, 555, 834
BstDSI CCRYGG 1 cut(s) 91
BstF5I GGATG 3 cut(s) 502, 706, 718
BstKTI GATC 1 cut(s) 811
BstMAI GTCTC 4 cut(s) 437, 503, 665, 762
BstMBI GATC 1 cut(s) 808
BstNSI RCATGY 1 cut(s) 802
BstV1I GCAGC 2 cut(s) 318, 557
BstV2I GAAGAC 3 cut(s) 273, 746, 798
Bsu15I ATCGAT 1 cut(s) 335
Bsu36I CCTNAGG 1 cut(s) 356
BsuTUI ATCGAT 1 cut(s) 335
BtgI CCRYGG 1 cut(s) 91
BtsCI GGATG 3 cut(s) 502, 706, 718
BtsIMutI CAGTG 1 cut(s) 24
CciI TCATGA 3 cut(s) 619, 784, 811
ClaI ATCGAT 1 cut(s) 335
CseI GACGC 1 cut(s) 420
Csp6I GTAC 1 cut(s) 247
CviAII CATG 5 cut(s) 592, 620, 785, 799, 812
CviQI GTAC 1 cut(s) 247
DdeI CTNAG 6 cut(s) 40, 267, 356, 399, 555, 834
DpnI GATC 1 cut(s) 810
DpnII GATC 1 cut(s) 808
Eco130I CCWWGG 2 cut(s) 600, 763
Eco81I CCTNAGG 1 cut(s) 356
EcoRI GAATTC 1 cut(s) 426
EcoT14I CCWWGG 2 cut(s) 600, 763
EcoT22I ATGCAT 1 cut(s) 597
ErhI CCWWGG 2 cut(s) 600, 763
Esp3I CGTCTC 1 cut(s) 437
FaeI CATG 5 cut(s) 595, 623, 788, 802, 815
FatI CATG 5 cut(s) 591, 619, 784, 798, 811
FauNDI CATATG 1 cut(s) 289
Fnu4HI GCNGC 2 cut(s) 307, 546
FokI GGATG 3 cut(s) 509, 713, 725
Fsp4HI GCNGC 2 cut(s) 307, 546
FspBI CTAG 1 cut(s) 717
GluI GCNGC 2 cut(s) 307, 546
HgaI GACGC 1 cut(s) 420
Hin1II CATG 5 cut(s) 595, 623, 788, 802, 815
HincII GTYRAC 2 cut(s) 6, 477
HindII GTYRAC 2 cut(s) 6, 477
HinfI GANTC 6 cut(s) 218, 337, 437, 629, 781, 832
HphI GGTGA 2 cut(s) 158, 264
Hpy166II GTNNAC 5 cut(s) 6, 55, 346, 477, 840
Hpy188I TCNGA 5 cut(s) 43, 82, 208, 442, 661
Hpy188III TCNNGA 6 cut(s) 215, 620, 686, 751, 785, 812
Hpy8I GTNNAC 5 cut(s) 6, 55, 346, 477, 840
Hpy99I CGWCG 1 cut(s) 414
HpyCH4III ACNGT 3 cut(s) 95, 242, 532
HpyCH4IV ACGT 1 cut(s) 473
HpyCH4V TGCA 3 cut(s) 545, 595, 824
HpyF3I CTNAG 6 cut(s) 40, 267, 356, 399, 555, 834
HpySE526I ACGT 1 cut(s) 473
Hsp92II CATG 5 cut(s) 595, 623, 788, 802, 815
Kzo9I GATC 1 cut(s) 808
LmnI GCTCC 1 cut(s) 17
LpnPI CCDG 5 cut(s) 201, 368, 416, 516, 531
Lsp1109I GCAGC 2 cut(s) 318, 557
LweI GCATC 1 cut(s) 703
MaeI CTAG 1 cut(s) 717
MaeII ACGT 1 cut(s) 473
MaeIII GTNAC 4 cut(s) 270, 455, 550, 829
MalI GATC 1 cut(s) 810
MbiI CCGCTC 1 cut(s) 407
MboI GATC 1 cut(s) 808
MboII GAAGA 5 cut(s) 95, 273, 751, 803, 818
MfeI CAATTG 2 cut(s) 825, 845
MluCI AATT 6 cut(s) 124, 193, 426, 689, 825, 845
MlyI GAGTC 1 cut(s) 826
Mph1103I ATGCAT 1 cut(s) 597
MseI TTAA 2 cut(s) 585, 606
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 2 cut(s) 453, 548
MunI CAATTG 2 cut(s) 825, 845
Mva1269I GAATGC 1 cut(s) 595
NdeI CATATG 1 cut(s) 289
NdeII GATC 1 cut(s) 808
NlaIII CATG 5 cut(s) 595, 623, 788, 802, 815
NmuCI GTSAC 4 cut(s) 270, 455, 550, 829
NsiI ATGCAT 1 cut(s) 597
NspI RCATGY 1 cut(s) 802
PagI TCATGA 3 cut(s) 619, 784, 811
PcsI WCGNNNNNNNCGW 1 cut(s) 415
PctI GAATGC 1 cut(s) 595
PfeI GAWTC 5 cut(s) 218, 337, 437, 629, 781
PflFI GACNNNGTC 2 cut(s) 364, 414
PkrI GCNGC 2 cut(s) 308, 547
PleI GAGTC 1 cut(s) 826
PpsI GAGTC 1 cut(s) 826
PsyI GACNNNGTC 2 cut(s) 364, 414
PvuII CAGCTG 2 cut(s) 453, 548
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 2 cut(s) 585, 606
SatI GCNGC 2 cut(s) 307, 546
Sau3AI GATC 1 cut(s) 808
SchI GAGTC 1 cut(s) 826
SfaNI GCATC 1 cut(s) 703
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 6 cut(s) 124, 193, 426, 689, 825, 845
SsiI CCGC 1 cut(s) 405
SspMI CTAG 1 cut(s) 717
StyI CCWWGG 2 cut(s) 600, 763
TaaI ACNGT 3 cut(s) 95, 242, 532
TaiI ACGT 1 cut(s) 476
TaqI TCGA 7 cut(s) 149, 335, 340, 409, 418, 632, 685
TasI AATT 6 cut(s) 124, 193, 426, 689, 825, 845
TfiI GAWTC 5 cut(s) 218, 337, 437, 629, 781
Tru1I TTAA 2 cut(s) 585, 606
Tru9I TTAA 2 cut(s) 585, 606
TscAI CASTG 1 cut(s) 31
TseFI GTSAC 4 cut(s) 270, 455, 550, 829
TseI GCWGC 2 cut(s) 306, 545
Tsp45I GTSAC 4 cut(s) 270, 455, 550, 829
TspDTI ATGAA 5 cut(s) 395, 603, 636, 773, 804
TspGWI ACGGA 3 cut(s) 40, 234, 461
TspRI CASTG 1 cut(s) 31
Tth111I GACNNNGTC 2 cut(s) 364, 414
XapI RAATTY 2 cut(s) 124, 426
XceI RCATGY 1 cut(s) 802
XspI CTAG 1 cut(s) 717
Zsp2I ATGCAT 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.