DEAD-box ATP-dependent RNA helicase
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WW | PF00397 | 64 - 94 | 3.8e-07 | WW domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 2349, 2625 |
| AccB1I | GGYRCC | 2 cut(s) | 720, 1772 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2440 |
| AccBSI | CCGCTC | 1 cut(s) | 123 |
| AccI | GTMKAC | 4 cut(s) | 906, 1426, 1934, 2678 |
| AccII | CGCG | 1 cut(s) | 1902 |
| AciI | CCGC | 5 cut(s) | 121, 713, 724, 1295, 2383 |
| AclWI | GGATC | 1 cut(s) | 2363 |
| AcuI | CTGAAG | 1 cut(s) | 1566 |
| AfaI | GTAC | 5 cut(s) | 239, 515, 1630, 2116, 2376 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 205, 206, 1706, 2440 |
| AflIII | ACRYGT | 1 cut(s) | 2377 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1930 |
| AhlI | ACTAGT | 2 cut(s) | 1421, 2681 |
| AjnI | CCWGG | 2 cut(s) | 1661, 2489 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1253, 1285 |
| AluBI | AGCT | 9 cut(s) | 293, 576, 595, 616, 1123, 1250, 1518, 1758, 2396 |
| AluI | AGCT | 9 cut(s) | 293, 576, 595, 616, 1123, 1250, 1518, 1758, 2396 |
| Alw21I | GWGCWC | 1 cut(s) | 2572 |
| Alw26I | GTCTC | 6 cut(s) | 770, 989, 1107, 1628, 1781, 2202 |
| Alw44I | GTGCAC | 1 cut(s) | 2568 |
| AlwI | GGATC | 1 cut(s) | 2363 |
| AoxI | GGCC | 1 cut(s) | 278 |
| ApaLI | GTGCAC | 1 cut(s) | 2568 |
| ApeKI | GCWGC | 3 cut(s) | 140, 573, 1829 |
| AseI | ATTAAT | 4 cut(s) | 1388, 1608, 2003, 2135 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2397 |
| AspS9I | GGNCC | 1 cut(s) | 161 |
| AsuC2I | CCSGG | 1 cut(s) | 897 |
| AsuHPI | GGTGA | 6 cut(s) | 251, 531, 869, 1683, 1732, 2369 |
| AvaII | GGWCC | 1 cut(s) | 161 |
| AxyI | CCTNAGG | 1 cut(s) | 623 |
| BaeGI | GKGCMC | 2 cut(s) | 897, 2572 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 361, 394 |
| BanI | GGYRCC | 2 cut(s) | 720, 1772 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2385, 2417 |
| BauI | CACGAG | 1 cut(s) | 2028 |
| BbsI | GAAGAC | 1 cut(s) | 540 |
| Bbv12I | GWGCWC | 1 cut(s) | 2572 |
| BbvI | GCAGC | 3 cut(s) | 127, 585, 1816 |
| BciT130I | CCWGG | 2 cut(s) | 1663, 2491 |
| BciVI | GTATCC | 1 cut(s) | 2600 |
| BcnI | CCSGG | 1 cut(s) | 897 |
| BcoDI | GTCTC | 6 cut(s) | 770, 989, 1107, 1628, 1781, 2202 |
| BcuI | ACTAGT | 2 cut(s) | 1421, 2681 |
| BfaI | CTAG | 5 cut(s) | 869, 1047, 1239, 1422, 2682 |
| BfmI | CTRYAG | 5 cut(s) | 744, 1875, 1948, 2468, 2595 |
| BfuI | GTATCC | 1 cut(s) | 2600 |
| BglII | AGATCT | 1 cut(s) | 181 |
| BisI | GCNGC | 4 cut(s) | 141, 574, 724, 1830 |
| BlsI | GCNGC | 4 cut(s) | 142, 575, 725, 1831 |
| Bme1390I | CCNGG | 3 cut(s) | 897, 1663, 2491 |
| Bme18I | GGWCC | 1 cut(s) | 161 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1930 |
| BmgT120I | GGNCC | 1 cut(s) | 161 |
| BmiI | GGNNCC | 3 cut(s) | 722, 1774, 1783 |
| BmrFI | CCNGG | 3 cut(s) | 897, 1663, 2491 |
| BmrI | ACTGGG | 1 cut(s) | 262 |
| BmsI | GCATC | 2 cut(s) | 45, 1033 |
| BmuI | ACTGGG | 1 cut(s) | 262 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1793 |
| BpiI | GAAGAC | 1 cut(s) | 540 |
| BpmI | CTGGAG | 2 cut(s) | 159, 2512 |
| BpuEI | CTTGAG | 1 cut(s) | 1540 |
| BpuMI | CCSGG | 1 cut(s) | 897 |
| Bsa29I | ATCGAT | 1 cut(s) | 602 |
| BsaI | GGTCTC | 2 cut(s) | 1628, 2202 |
| BsaJI | CCNNGG | 6 cut(s) | 164, 200, 373, 930, 1662, 2239 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 205, 206, 1706, 2440 |
| Bse1I | ACTGG | 6 cut(s) | 248, 268, 455, 1439, 2122, 2372 |
| Bse21I | CCTNAGG | 1 cut(s) | 623 |
| Bse3DI | GCAATG | 1 cut(s) | 1797 |
| BseBI | CCWGG | 2 cut(s) | 1663, 2491 |
| BseCI | ATCGAT | 1 cut(s) | 602 |
| BseDI | CCNNGG | 6 cut(s) | 164, 200, 373, 930, 1662, 2239 |
| BseGI | GGATG | 4 cut(s) | 864, 1036, 1048, 2639 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 205, 206, 1706, 2440 |
| BseMI | GCAATG | 1 cut(s) | 1797 |
| BseMII | CTCAG | 6 cut(s) | 336, 548, 694, 1232, 1623, 1766 |
| BseNI | ACTGG | 6 cut(s) | 248, 268, 455, 1439, 2122, 2372 |
| BseRI | GAGGAG | 1 cut(s) | 285 |
| BseSI | GKGCMC | 2 cut(s) | 897, 2572 |
| BseXI | GCAGC | 3 cut(s) | 127, 585, 1816 |
| BsgI | GTGCAG | 2 cut(s) | 921, 1478 |
| Bsh1236I | CGCG | 1 cut(s) | 1902 |
| BshFI | GGCC | 1 cut(s) | 280 |
| BshNI | GGYRCC | 2 cut(s) | 720, 1772 |
| BshVI | ATCGAT | 1 cut(s) | 602 |
| BsiHKAI | GWGCWC | 1 cut(s) | 2572 |
| BsiSI | CCGG | 1 cut(s) | 897 |
| BslFI | GGGAC | 1 cut(s) | 2460 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 205, 206, 1706, 2440 |
| BsmAI | GTCTC | 6 cut(s) | 770, 989, 1107, 1628, 1781, 2202 |
| BsmBI | CGTCTC | 1 cut(s) | 1781 |
| BsmFI | GGGAC | 1 cut(s) | 2460 |
| BsnI | GGCC | 1 cut(s) | 280 |
| Bso31I | GGTCTC | 2 cut(s) | 1628, 2202 |
| Bsp1286I | GDGCHC | 2 cut(s) | 897, 2572 |
| Bsp143I | GATC | 5 cut(s) | 181, 1153, 1489, 2368, 2638 |
| Bsp19I | CCATGG | 2 cut(s) | 164, 373 |
| BspACI | CCGC | 5 cut(s) | 121, 713, 724, 1295, 2383 |
| BspANI | GGCC | 1 cut(s) | 280 |
| BspCNI | CTCAG | 6 cut(s) | 335, 547, 693, 1231, 1624, 1765 |
| BspDI | ATCGAT | 1 cut(s) | 602 |
| BspFNI | CGCG | 1 cut(s) | 1902 |
| BspHI | TCATGA | 2 cut(s) | 949, 1129 |
| BspLI | GGNNCC | 3 cut(s) | 722, 1774, 1783 |
| BspMAI | CTGCAG | 3 cut(s) | 748, 1879, 2472 |
| BspPI | GGATC | 1 cut(s) | 2363 |
| BspQI | GCTCTTC | 1 cut(s) | 2403 |
| BspT107I | GGYRCC | 2 cut(s) | 720, 1772 |
| BspTNI | GGTCTC | 2 cut(s) | 1628, 2202 |
| BsrBI | CCGCTC | 1 cut(s) | 123 |
| BsrDI | GCAATG | 1 cut(s) | 1797 |
| BsrI | ACTGG | 6 cut(s) | 248, 268, 455, 1439, 2122, 2372 |
| BssECI | CCNNGG | 6 cut(s) | 164, 200, 373, 930, 1662, 2239 |
| BssMI | GATC | 5 cut(s) | 181, 1153, 1489, 2368, 2638 |
| BssNAI | GTATAC | 1 cut(s) | 2679 |
| BssSI | CACGAG | 1 cut(s) | 2028 |
| BssT1I | CCWWGG | 5 cut(s) | 164, 200, 373, 930, 2239 |
| Bst1107I | GTATAC | 1 cut(s) | 2679 |
| Bst2BI | CACGAG | 1 cut(s) | 2028 |
| Bst2UI | CCWGG | 2 cut(s) | 1663, 2491 |
| Bst4CI | ACNGT | 7 cut(s) | 509, 1085, 1166, 1642, 1795, 1907, 2336 |
| Bst6I | CTCTTC | 2 cut(s) | 2403, 2753 |
| BstC8I | GCNNGC | 2 cut(s) | 1323, 1327 |
| BstDEI | CTNAG | 9 cut(s) | 322, 534, 623, 680, 1119, 1218, 1632, 1752, 2642 |
| BstDSI | CCRYGG | 2 cut(s) | 164, 373 |
| BstEII | GGTNACC | 1 cut(s) | 1689 |
| BstF5I | GGATG | 4 cut(s) | 864, 1036, 1048, 2639 |
| BstFNI | CGCG | 1 cut(s) | 1902 |
| BstKTI | GATC | 5 cut(s) | 184, 1156, 1492, 2371, 2641 |
| BstMAI | GTCTC | 6 cut(s) | 770, 989, 1107, 1628, 1781, 2202 |
| BstMBI | GATC | 5 cut(s) | 181, 1153, 1489, 2368, 2638 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 570, 1292, 1561, 1835 |
| BstNI | CCWGG | 2 cut(s) | 1663, 2491 |
| BstNSI | RCATGY | 3 cut(s) | 1147, 1325, 2381 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1793 |
| BstPI | GGTNACC | 1 cut(s) | 1689 |
| BstSCI | CCNGG | 3 cut(s) | 895, 1661, 2489 |
| BstSFI | CTRYAG | 5 cut(s) | 744, 1875, 1948, 2468, 2595 |
| BstSLI | GKGCMC | 2 cut(s) | 897, 2572 |
| BstUI | CGCG | 1 cut(s) | 1902 |
| BstV1I | GCAGC | 3 cut(s) | 127, 585, 1816 |
| BstV2I | GAAGAC | 1 cut(s) | 540 |
| BstX2I | RGATCY | 1 cut(s) | 181 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 201, 2225 |
| BstYI | RGATCY | 1 cut(s) | 181 |
| BstZ17I | GTATAC | 1 cut(s) | 2679 |
| Bsu15I | ATCGAT | 1 cut(s) | 602 |
| Bsu36I | CCTNAGG | 1 cut(s) | 623 |
| BsuI | GTATCC | 1 cut(s) | 2600 |
| BsuRI | GGCC | 1 cut(s) | 280 |
| BsuTUI | ATCGAT | 1 cut(s) | 602 |
| BtgI | CCRYGG | 2 cut(s) | 164, 373 |
| BtsCI | GGATG | 4 cut(s) | 864, 1036, 1048, 2639 |
| BtsI | GCAGTG | 1 cut(s) | 30 |
| BtsIMutI | CAGTG | 7 cut(s) | 30, 844, 1171, 1387, 1638, 1823, 1864 |
| Cac8I | GCNNGC | 2 cut(s) | 1323, 1327 |
| CciI | TCATGA | 2 cut(s) | 949, 1129 |
| Cfr13I | GGNCC | 1 cut(s) | 161 |
| ClaI | ATCGAT | 1 cut(s) | 602 |
| Csp6I | GTAC | 5 cut(s) | 238, 514, 1629, 2115, 2375 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1178, 1213 |
| CviQI | GTAC | 5 cut(s) | 238, 514, 1629, 2115, 2375 |
| DdeI | CTNAG | 9 cut(s) | 322, 534, 623, 680, 1119, 1218, 1632, 1752, 2642 |
| DpnI | GATC | 5 cut(s) | 183, 1155, 1491, 2370, 2640 |
| DpnII | GATC | 5 cut(s) | 181, 1153, 1489, 2368, 2638 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1930 |
| Eam1104I | CTCTTC | 2 cut(s) | 2403, 2753 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1930 |
| EarI | CTCTTC | 2 cut(s) | 2403, 2753 |
| EciI | GGCGGA | 1 cut(s) | 728 |
| Eco130I | CCWWGG | 5 cut(s) | 164, 200, 373, 930, 2239 |
| Eco31I | GGTCTC | 2 cut(s) | 1628, 2202 |
| Eco47I | GGWCC | 1 cut(s) | 161 |
| Eco57I | CTGAAG | 1 cut(s) | 1566 |
| Eco81I | CCTNAGG | 1 cut(s) | 623 |
| Eco91I | GGTNACC | 1 cut(s) | 1689 |
| EcoO65I | GGTNACC | 1 cut(s) | 1689 |
| EcoRI | GAATTC | 1 cut(s) | 693 |
| EcoRII | CCWGG | 2 cut(s) | 1661, 2489 |
| EcoT14I | CCWWGG | 5 cut(s) | 164, 200, 373, 930, 2239 |
| EcoT22I | ATGCAT | 1 cut(s) | 1557 |
| ErhI | CCWWGG | 5 cut(s) | 164, 200, 373, 930, 2239 |
| Esp3I | CGTCTC | 1 cut(s) | 1781 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2527, 2559 |
| FaqI | GGGAC | 1 cut(s) | 2460 |
| FauNDI | CATATG | 2 cut(s) | 556, 1551 |
| FblI | GTMKAC | 4 cut(s) | 906, 1426, 1934, 2678 |
| Fnu4HI | GCNGC | 4 cut(s) | 141, 574, 724, 1830 |
| FokI | GGATG | 4 cut(s) | 851, 1043, 1055, 2646 |
| Fsp4HI | GCNGC | 4 cut(s) | 141, 574, 724, 1830 |
| FspBI | CTAG | 5 cut(s) | 869, 1047, 1239, 1422, 2682 |
| GluI | GCNGC | 4 cut(s) | 141, 574, 724, 1830 |
| GsuI | CTGGAG | 2 cut(s) | 159, 2512 |
| HaeIII | GGCC | 1 cut(s) | 280 |
| HapII | CCGG | 1 cut(s) | 897 |
| HincII | GTYRAC | 1 cut(s) | 287 |
| HindII | GTYRAC | 1 cut(s) | 287 |
| HindIII | AAGCTT | 1 cut(s) | 1121 |
| HpaII | CCGG | 1 cut(s) | 897 |
| HphI | GGTGA | 6 cut(s) | 251, 531, 869, 1683, 1732, 2369 |
| Hpy166II | GTNNAC | 8 cut(s) | 287, 337, 907, 1427, 1935, 2101, 2570, 2679 |
| Hpy188III | TCNNGA | 7 cut(s) | 113, 251, 950, 1130, 1400, 1966, 2028 |
| Hpy8I | GTNNAC | 8 cut(s) | 287, 337, 907, 1427, 1935, 2101, 2570, 2679 |
| Hpy99I | CGWCG | 2 cut(s) | 108, 1291 |
| HpyAV | CCTTC | 2 cut(s) | 322, 2134 |
| HpyCH4III | ACNGT | 7 cut(s) | 509, 1085, 1166, 1642, 1795, 1907, 2336 |
| HpyCH4IV | ACGT | 2 cut(s) | 740, 1289 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 570, 1292, 1561, 1835 |
| HpyF3I | CTNAG | 9 cut(s) | 322, 534, 623, 680, 1119, 1218, 1632, 1752, 2642 |
| HpySE526I | ACGT | 2 cut(s) | 740, 1289 |
| Kzo9I | GATC | 5 cut(s) | 181, 1153, 1489, 2368, 2638 |
| LguI | GCTCTTC | 1 cut(s) | 2403 |
| LmnI | GCTCC | 3 cut(s) | 178, 298, 1561 |
| Lsp1109I | GCAGC | 3 cut(s) | 127, 585, 1816 |
| LweI | GCATC | 2 cut(s) | 45, 1033 |
| MaeI | CTAG | 5 cut(s) | 869, 1047, 1239, 1422, 2682 |
| MaeII | ACGT | 2 cut(s) | 740, 1289 |
| MaeIII | GTNAC | 7 cut(s) | 537, 1222, 1689, 1896, 2234, 2264, 2590 |
| MalI | GATC | 5 cut(s) | 183, 1155, 1491, 2370, 2640 |
| MbiI | CCGCTC | 1 cut(s) | 123 |
| MboI | GATC | 5 cut(s) | 181, 1153, 1489, 2368, 2638 |
| MfeI | CAATTG | 2 cut(s) | 813, 1833 |
| MflI | RGATCY | 1 cut(s) | 181 |
| MhlI | GDGCHC | 2 cut(s) | 897, 2572 |
| MlyI | GAGTC | 5 cut(s) | 672, 1109, 1175, 1390, 2482 |
| MmeI | TCCRAC | 2 cut(s) | 158, 2714 |
| Mph1103I | ATGCAT | 1 cut(s) | 1557 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2397 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1554, 2553, 2565 |
| MspI | CCGG | 1 cut(s) | 897 |
| MspR9I | CCNGG | 3 cut(s) | 897, 1663, 2491 |
| MunI | CAATTG | 2 cut(s) | 813, 1833 |
| MvaI | CCWGG | 2 cut(s) | 1663, 2491 |
| MvnI | CGCG | 1 cut(s) | 1902 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 570, 1292, 1561, 1835 |
| NciI | CCSGG | 1 cut(s) | 897 |
| NcoI | CCATGG | 2 cut(s) | 164, 373 |
| NdeI | CATATG | 2 cut(s) | 556, 1551 |
| NdeII | GATC | 5 cut(s) | 181, 1153, 1489, 2368, 2638 |
| NlaIV | GGNNCC | 3 cut(s) | 722, 1774, 1783 |
| NmuCI | GTSAC | 2 cut(s) | 537, 1689 |
| NsiI | ATGCAT | 1 cut(s) | 1557 |
| NspI | RCATGY | 3 cut(s) | 1147, 1325, 2381 |
| PaeI | GCATGC | 1 cut(s) | 1325 |
| PagI | TCATGA | 2 cut(s) | 949, 1129 |
| PciI | ACATGT | 1 cut(s) | 2377 |
| PciSI | GCTCTTC | 1 cut(s) | 2403 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2397 |
| PflFI | GACNNNGTC | 2 cut(s) | 631, 681 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2440 |
| PkrI | GCNGC | 4 cut(s) | 142, 575, 725, 1831 |
| PleI | GAGTC | 5 cut(s) | 672, 1109, 1175, 1390, 2481 |
| PpsI | GAGTC | 5 cut(s) | 672, 1109, 1175, 1390, 2481 |
| PscI | ACATGT | 1 cut(s) | 2377 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1793 |
| PshBI | ATTAAT | 4 cut(s) | 1388, 1608, 2003, 2135 |
| PsiI | TTATAA | 2 cut(s) | 2349, 2625 |
| Psp6I | CCWGG | 2 cut(s) | 1661, 2489 |
| PspEI | GGTNACC | 1 cut(s) | 1689 |
| PspGI | CCWGG | 2 cut(s) | 1661, 2489 |
| PspN4I | GGNNCC | 3 cut(s) | 722, 1774, 1783 |
| PspPI | GGNCC | 1 cut(s) | 161 |
| PstI | CTGCAG | 3 cut(s) | 748, 1879, 2472 |
| PsuI | RGATCY | 1 cut(s) | 181 |
| PsyI | GACNNNGTC | 2 cut(s) | 631, 681 |
| RsaI | GTAC | 5 cut(s) | 239, 515, 1630, 2116, 2376 |
| RsaNI | GTAC | 5 cut(s) | 238, 514, 1629, 2115, 2375 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1554, 2553, 2565 |
| SapI | GCTCTTC | 1 cut(s) | 2403 |
| SatI | GCNGC | 4 cut(s) | 141, 574, 724, 1830 |
| Sau3AI | GATC | 5 cut(s) | 181, 1153, 1489, 2368, 2638 |
| Sau96I | GGNCC | 1 cut(s) | 161 |
| SchI | GAGTC | 5 cut(s) | 672, 1109, 1175, 1390, 2482 |
| ScrFI | CCNGG | 3 cut(s) | 897, 1663, 2491 |
| SduI | GDGCHC | 2 cut(s) | 897, 2572 |
| SfaNI | GCATC | 2 cut(s) | 45, 1033 |
| SfcI | CTRYAG | 5 cut(s) | 744, 1875, 1948, 2468, 2595 |
| SinI | GGWCC | 1 cut(s) | 161 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1554, 2553, 2565 |
| SmlI | CTYRAG | 1 cut(s) | 1519 |
| SmoI | CTYRAG | 1 cut(s) | 1519 |
| SpeI | ACTAGT | 2 cut(s) | 1421, 2681 |
| SphI | GCATGC | 1 cut(s) | 1325 |
| SsiI | CCGC | 5 cut(s) | 121, 713, 724, 1295, 2383 |
| SspMI | CTAG | 5 cut(s) | 869, 1047, 1239, 1422, 2682 |
| StyD4I | CCNGG | 3 cut(s) | 895, 1661, 2489 |
| StyI | CCWWGG | 5 cut(s) | 164, 200, 373, 930, 2239 |
| TaaI | ACNGT | 7 cut(s) | 509, 1085, 1166, 1642, 1795, 1907, 2336 |
| TaiI | ACGT | 2 cut(s) | 743, 1292 |
| TaqI | TCGA | 6 cut(s) | 44, 416, 602, 607, 676, 1264 |
| TatI | WGTACW | 2 cut(s) | 237, 2374 |
| TauI | GCSGC | 1 cut(s) | 726 |
| TscAI | CASTG | 7 cut(s) | 30, 844, 1171, 1387, 1645, 1823, 1864 |
| TseFI | GTSAC | 2 cut(s) | 537, 1689 |
| TseI | GCWGC | 3 cut(s) | 140, 573, 1829 |
| Tsp45I | GTSAC | 2 cut(s) | 537, 1689 |
| TspGWI | ACGGA | 2 cut(s) | 322, 501 |
| TspRI | CASTG | 7 cut(s) | 30, 844, 1171, 1387, 1645, 1823, 1864 |
| Tth111I | GACNNNGTC | 2 cut(s) | 631, 681 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2440 |
| VneI | GTGCAC | 1 cut(s) | 2568 |
| VpaK11BI | GGWCC | 1 cut(s) | 161 |
| VspI | ATTAAT | 4 cut(s) | 1388, 1608, 2003, 2135 |
| XceI | RCATGY | 3 cut(s) | 1147, 1325, 2381 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1973 |
| XmiI | GTMKAC | 4 cut(s) | 906, 1426, 1934, 2678 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2397 |
| XspI | CTAG | 5 cut(s) | 869, 1047, 1239, 1422, 2682 |
| Zsp2I | ATGCAT | 1 cut(s) | 1557 |