RchiOBHm_Chr4g0404281

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0004257
Physical Location & Seq
Reverse (-)
24036131 .. 24036694
564 bp
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UTR
Exon/CDS
Intron
PRQ37586

Sequence Viewer

Length: 384 bp
ATGGCTTGTTTTGAAAGTACATTCATTTATCTGCGATCCACATTTGTAGAGATGGGTGAAGCAGTCAAGGTAGTGGTTTTGGAGTCTGTTCTAAAGAAGAGGAAGAGAGAGAAGGAATGGGCCTTGGCAAAGAAGCAGGGGCTTGAAGCTGCCAAGAAGAAGAATGCTGAGAATAGAAAGCTTATTTACAACAAATTCAAACAGTACACCAAGGAGTACGCAAAGAAGGACAATGAGTTGGTCCAGTTGAAGCGTGAAGCAAGGCTAAAAAGAGGATTCTATGTCGAGCCAGACTCAAAGCTTTTGTTTATCATTCGTATCCGTGGTTTCAATGCCAATGATCCAAAGACAAAGAAGATCTTGCAGCTTTTGCGATTGAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

127

Amino Acids

15.1

Weight (kDa)

10.16

Isoelectric Point (pI)

42.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30_N PF08079 27 - 97 5.8e-18 Ribosomal L30 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 30, 335
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 3 cut(s) 19, 206, 218
AgsI TTSAA 5 cut(s) 14, 146, 199, 250, 331
AluBI AGCT 4 cut(s) 149, 181, 301, 367
AluI AGCT 4 cut(s) 149, 181, 301, 367
AlwI GGATC 2 cut(s) 30, 335
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 149, 364
ApoI RAATTY 1 cut(s) 194
AspS9I GGNCC 2 cut(s) 120, 241
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 136, 376
BccI CCATC 1 cut(s) 46
BciVI GTATCC 1 cut(s) 329
BfuI GTATCC 1 cut(s) 329
BglII AGATCT 1 cut(s) 357
BisI GCNGC 2 cut(s) 150, 365
BlsI GCNGC 2 cut(s) 151, 366
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 2 cut(s) 120, 241
BplI GAGNNNNNCTC 2 cut(s) 278, 310
BsaJI CCNNGG 3 cut(s) 123, 210, 322
Bse1I ACTGG 1 cut(s) 244
BseDI CCNNGG 3 cut(s) 123, 210, 322
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 136, 376
BshFI GGCC 1 cut(s) 122
BsmI GAATGC 1 cut(s) 169
BsnI GGCC 1 cut(s) 122
Bsp143I GATC 3 cut(s) 35, 340, 357
BspANI GGCC 1 cut(s) 122
BspCNI CTCAG 1 cut(s) 160
BspPI GGATC 2 cut(s) 30, 335
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 123, 210, 322
BssMI GATC 3 cut(s) 35, 340, 357
BssT1I CCWWGG 2 cut(s) 123, 210
Bst4CI ACNGT 1 cut(s) 204
Bst6I CTCTTC 2 cut(s) 92, 98
BstAPI GCANNNNNTGC 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 168
BstDSI CCRYGG 1 cut(s) 322
BstKTI GATC 3 cut(s) 38, 343, 360
BstMBI GATC 3 cut(s) 35, 340, 357
BstMWI GCNNNNNNNGC 1 cut(s) 370
BstV1I GCAGC 2 cut(s) 136, 376
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 122
BtgI CCRYGG 1 cut(s) 322
Cfr13I GGNCC 2 cut(s) 120, 241
Csp6I GTAC 3 cut(s) 18, 205, 217
CviJI RGCY 9 cut(s) 5, 122, 142, 149, 181, 265, 289, 301, 367
CviKI_1 RGCY 9 cut(s) 5, 122, 142, 149, 181, 265, 289, 301, 367
CviQI GTAC 3 cut(s) 18, 205, 217
DdeI CTNAG 1 cut(s) 168
DpnI GATC 3 cut(s) 37, 342, 359
DpnII GATC 3 cut(s) 35, 340, 357
Eam1104I CTCTTC 2 cut(s) 92, 98
EarI CTCTTC 2 cut(s) 92, 98
Eco130I CCWWGG 2 cut(s) 123, 210
Eco47I GGWCC 1 cut(s) 241
EcoT14I CCWWGG 2 cut(s) 123, 210
ErhI CCWWGG 2 cut(s) 123, 210
FaiI YATR 1 cut(s) 282
FalI AAGNNNNNCTT 2 cut(s) 344, 376
Fnu4HI GCNGC 2 cut(s) 150, 365
Fsp4HI GCNGC 2 cut(s) 150, 365
GluI GCNGC 2 cut(s) 150, 365
HaeIII GGCC 1 cut(s) 122
HindIII AAGCTT 2 cut(s) 179, 299
HinfI GANTC 3 cut(s) 83, 276, 293
HphI GGTGA 1 cut(s) 68
Hpy166II GTNNAC 1 cut(s) 207
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 2 cut(s) 106, 220
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 1 cut(s) 364
HpyF10VI GCNNNNNNNGC 1 cut(s) 370
HpyF3I CTNAG 1 cut(s) 168
Kzo9I GATC 3 cut(s) 35, 340, 357
LpnPI CCDG 3 cut(s) 122, 257, 303
Lsp1109I GCAGC 2 cut(s) 136, 376
MalI GATC 3 cut(s) 37, 342, 359
MboI GATC 3 cut(s) 35, 340, 357
MboII GAAGA 5 cut(s) 109, 115, 169, 172, 367
MflI RGATCY 1 cut(s) 357
MluCI AATT 1 cut(s) 194
MlyI GAGTC 2 cut(s) 92, 287
MnlI CCTC 2 cut(s) 93, 266
Mva1269I GAATGC 1 cut(s) 169
MwoI GCNNNNNNNGC 1 cut(s) 370
NdeII GATC 3 cut(s) 35, 340, 357
PctI GAATGC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 276
PkrI GCNGC 2 cut(s) 151, 366
PleI GAGTC 2 cut(s) 91, 287
PpsI GAGTC 2 cut(s) 91, 287
PspPI GGNCC 2 cut(s) 120, 241
PsuI RGATCY 1 cut(s) 357
RsaI GTAC 3 cut(s) 19, 206, 218
RsaNI GTAC 3 cut(s) 18, 205, 217
SatI GCNGC 2 cut(s) 150, 365
Sau3AI GATC 3 cut(s) 35, 340, 357
Sau96I GGNCC 2 cut(s) 120, 241
SchI GAGTC 2 cut(s) 92, 287
SetI ASST 5 cut(s) 72, 151, 183, 303, 369
SinI GGWCC 1 cut(s) 241
Sse9I AATT 1 cut(s) 194
StyI CCWWGG 2 cut(s) 123, 210
TaaI ACNGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 285
TasI AATT 1 cut(s) 194
TatI WGTACW 2 cut(s) 17, 204
TfiI GAWTC 1 cut(s) 276
TseI GCWGC 2 cut(s) 149, 364
TspDTI ATGAA 1 cut(s) 13
TspGWI ACGGA 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 241
XapI RAATTY 1 cut(s) 194
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.