Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004257

Physical Location & Seq

Genomic Coordinates Forward (+)

19770910 .. 19779118

Gene Structure 8209 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG115200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGACAAGGAAAGCATAGGGAATAATGGGAAGAATGAGGGGAAGGGGAGTATAACTTCATACATAGTCCTAGAAGAATGCCAGGGTATGGGAATTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAGCTTTTGCGTTTGAGACAGGGTTTGGGCAAGCATGGCATTATCTGCACTGAGGATCTTATTCACGAGATCTTGACAGTTGGAAGGAGGCTAACAACTTCCTGTGGCCATTTAAGCTCAAGGCACCATTGGGTGGTCTTAAGAAGAAGAGGAACCGTTATGTTGAAGGTGGAGATGCTGGAAACCGTGAGAACTACTTCAACGAGCTTATTAGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009536 GO:0009987 GO:0010467 GO:0015934 GO:0016020 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0030312 GO:0031090 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0071944 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

117

Amino Acids

13.02

Weight (kDa)

9.41

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004257)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404281 RchiOBHm_Chr4g0405601 RchiOBHm_Chr4g0416011 RchiOBHm_Chr6g0272841
rosa_multiflora	Rmu_sc0000272.1_g000010 Rmu_sc0000533.1_g000058 Rmu_sc0000683.1_g000005 Rmu_sc0002798.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005510 Rroxscaffold_1G00054810 Rroxscaffold_1G00055880 Rroxscaffold_2G00087770
rosa_rugosa	Rorug02G0232900 Rorug04G0335200
rosa_samantha	Rh1AG115100 Rh1AG115200 Rh1BG108300 Rh1CG111100 Rh1CG146400 Rh1DG119800 Rh1DG119900 Rh2AG175000 Rh2CG179500 Rh2DG181400 Rh4AG148900 Rh4AG161700 Rh4CG155600 Rh5CG070700 Rh5DG564800 Rh6DG180600 Rh7AG378500 Rh7BG442400
rosa_wichuraiana	Rw7G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AccB7I	CCANNNNNTGG	2 cut(s)	88, 265
AclWI	GGATC	2 cut(s)	104, 195
AcoI	YGGCCR	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	88, 265
AflII	CTTAAG	1 cut(s)	271
AgsI	TTSAA	2 cut(s)	298, 333
AjnI	CCWGG	1 cut(s)	81
AluBI	AGCT	3 cut(s)	136, 249, 339
AluI	AGCT	3 cut(s)	136, 249, 339
Alw26I	GTCTC	1 cut(s)	142
AlwI	GGATC	2 cut(s)	104, 195
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	1 cut(s)	133
Asp700I	GAANNNNTTC	1 cut(s)	328
BalI	TGGCCA	1 cut(s)	240
BanI	GGYRCC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	197
BbvI	GCAGC	1 cut(s)	145
BciT130I	CCWGG	1 cut(s)	83
BcoDI	GTCTC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	71
BfrI	CTTAAG	1 cut(s)	271
BglII	AGATCT	2 cut(s)	126, 201
BisI	GCNGC	1 cut(s)	134
BlsI	GCNGC	1 cut(s)	135
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	2 cut(s)	257, 286
BmrFI	CCNGG	1 cut(s)	83
BmsI	GCATC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	2 cut(s)	88, 265
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	82
BseLI	CCNNNNNNNGG	2 cut(s)	88, 265
BseMII	CTCAG	1 cut(s)	174
BseXI	GCAGC	1 cut(s)	145
BsgI	GTGCAG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	240
BshNI	GGYRCC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	88, 265
BsmAI	GTCTC	1 cut(s)	142
BsmI	GAATGC	1 cut(s)	83
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	4 cut(s)	109, 126, 187, 201
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	2 cut(s)	257, 286
BspPI	GGATC	2 cut(s)	104, 195
BspT107I	GGYRCC	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	82
BssMI	GATC	4 cut(s)	109, 126, 187, 201
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	3 cut(s)	211, 289, 319
Bst6I	CTCTTC	1 cut(s)	274
BstAFI	CTTAAG	1 cut(s)	271
BstAPI	GCANNNNNTGC	2 cut(s)	139, 177
BstC8I	GCNNGC	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	183
BstKTI	GATC	4 cut(s)	112, 129, 190, 204
BstMAI	GTCTC	1 cut(s)	142
BstMBI	GATC	4 cut(s)	109, 126, 187, 201
BstMWI	GCNNNNNNNGC	4 cut(s)	139, 168, 177, 246
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BstV1I	GCAGC	1 cut(s)	145
BstX2I	RGATCY	3 cut(s)	126, 187, 201
BstYI	RGATCY	3 cut(s)	126, 187, 201
BsuRI	GGCC	1 cut(s)	240
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	164
CviAII	CATG	1 cut(s)	167
CviJI	RGCY	5 cut(s)	136, 223, 240, 249, 339
CviKI_1	RGCY	5 cut(s)	136, 223, 240, 249, 339
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	4 cut(s)	111, 128, 189, 203
DpnII	GATC	4 cut(s)	109, 126, 187, 201
EaeI	YGGCCR	1 cut(s)	238
Eam1104I	CTCTTC	1 cut(s)	274
EarI	CTCTTC	1 cut(s)	274
EcoRII	CCWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	170
FaiI	YATR	7 cut(s)	17, 53, 61, 65, 89, 168, 293
FalI	AAGNNNNNCTT	2 cut(s)	113, 145
FatI	CATG	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	134
Fsp4HI	GCNGC	1 cut(s)	134
FspBI	CTAG	1 cut(s)	71
GluI	GCNGC	1 cut(s)	134
HaeIII	GGCC	1 cut(s)	240
Hin1II	CATG	1 cut(s)	170
Hpy188III	TCNNGA	2 cut(s)	197, 205
HpyAV	CCTTC	3 cut(s)	37, 210, 292
HpyCH4III	ACNGT	3 cut(s)	211, 289, 319
HpyCH4V	TGCA	2 cut(s)	133, 180
HpyF10VI	GCNNNNNNNGC	4 cut(s)	139, 168, 177, 246
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	1 cut(s)	170
Kzo9I	GATC	4 cut(s)	109, 126, 187, 201
LpnPI	CCDG	5 cut(s)	68, 95, 137, 247, 296
Lsp1109I	GCAGC	1 cut(s)	145
LweI	GCATC	1 cut(s)	297
MaeI	CTAG	1 cut(s)	71
MalI	GATC	4 cut(s)	111, 128, 189, 203
MboI	GATC	4 cut(s)	109, 126, 187, 201
MboII	GAAGA	5 cut(s)	43, 86, 136, 288, 291
MflI	RGATCY	3 cut(s)	126, 187, 201
MlsI	TGGCCA	1 cut(s)	240
MluCI	AATT	1 cut(s)	93
MluNI	TGGCCA	1 cut(s)	240
MmeI	TCCRAC	1 cut(s)	193
MnlI	CCTC	4 cut(s)	31, 178, 213, 275
Mox20I	TGGCCA	1 cut(s)	240
MroXI	GAANNNNTTC	1 cut(s)	328
MscI	TGGCCA	1 cut(s)	240
MseI	TTAA	2 cut(s)	245, 272
Msp20I	TGGCCA	1 cut(s)	240
MspCI	CTTAAG	1 cut(s)	271
MspR9I	CCNGG	1 cut(s)	83
Mva1269I	GAATGC	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	4 cut(s)	139, 168, 177, 246
NdeII	GATC	4 cut(s)	109, 126, 187, 201
NlaIII	CATG	1 cut(s)	170
NlaIV	GGNNCC	2 cut(s)	257, 286
PctI	GAATGC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	328
PflMI	CCANNNNNTGG	2 cut(s)	88, 265
PkrI	GCNGC	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	2 cut(s)	257, 286
PsuI	RGATCY	3 cut(s)	126, 187, 201
SaqAI	TTAA	2 cut(s)	245, 272
SatI	GCNGC	1 cut(s)	134
Sau3AI	GATC	4 cut(s)	109, 126, 187, 201
ScrFI	CCNGG	1 cut(s)	83
SetI	ASST	4 cut(s)	138, 251, 303, 341
SfaNI	GCATC	1 cut(s)	297
SmlI	CTYRAG	2 cut(s)	250, 271
SmoI	CTYRAG	2 cut(s)	250, 271
Sse9I	AATT	1 cut(s)	93
SspMI	CTAG	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	81
TaaI	ACNGT	3 cut(s)	211, 289, 319
TasI	AATT	1 cut(s)	93
Tru1I	TTAA	2 cut(s)	245, 272
Tru9I	TTAA	2 cut(s)	245, 272
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	133
TspDTI	ATGAA	1 cut(s)	48
TspRI	CASTG	1 cut(s)	187
Van91I	CCANNNNNTGG	2 cut(s)	88, 265
Vha464I	CTTAAG	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	328
XspI	CTAG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.