Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000533.1

Orthogroup ID

OG0004257

Physical Location & Seq

Genomic Coordinates Forward (+)

200721 .. 209135

Gene Structure 8415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000533.1_g000058.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgggtgaagcagtcaaggtagtggtttcggagtctgttctaaagaagaggaagagagaggaggaatgggccttggcaaagaagcaggggcttgaagcttccaagaagaagaatgctgagaatagaaagcttatttacaacaaattcaaacagtacaccaatgagtacgcagagaaggacaatgagttggtctggttgaaacttgaagcaaggctgaaaggaggattctatgttgagccagactctaagcaaggagcggactggtctggtggctcggggcagtgggctgttgggcagggctgtctgcagcgagctctacttgggccgccggggatggtgctgggcttcagatcgcggatgcgctgcaactctgcaaggatcggtgatgcgcgcgggagttggtggtggtgtgctggtgtccggcagaggaatctggaaaagcagcaggtggcgggggtccggtggagcgttatagaggtgctgggtgtgcagaggcggtgcttgcagcgtctatgtgggctggagatgccggagacggatcactgtagtcggagacggatcacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

188

Amino Acids

21.47

Weight (kDa)

9.84

Isoelectric Point (pI)

52.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004257)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404281 RchiOBHm_Chr4g0405601 RchiOBHm_Chr4g0416011 RchiOBHm_Chr6g0272841
rosa_multiflora	Rmu_sc0000272.1_g000010 Rmu_sc0000533.1_g000058 Rmu_sc0000683.1_g000005 Rmu_sc0002798.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005510 Rroxscaffold_1G00054810 Rroxscaffold_1G00055880 Rroxscaffold_2G00087770
rosa_rugosa	Rorug02G0232900 Rorug04G0335200
rosa_samantha	Rh1AG115100 Rh1AG115200 Rh1BG108300 Rh1CG111100 Rh1CG146400 Rh1DG119800 Rh1DG119900 Rh2AG175000 Rh2CG179500 Rh2DG181400 Rh4AG148900 Rh4AG161700 Rh4CG155600 Rh5CG070700 Rh5DG564800 Rh6DG180600 Rh7AG378500 Rh7BG442400
rosa_wichuraiana	Rw7G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccBSI	CCGCTC	1 cut(s)	257
AccII	CGCG	3 cut(s)	355, 391, 393
AciI	CCGC	6 cut(s)	257, 326, 355, 393, 452, 496
AclWI	GGATC	3 cut(s)	386, 546, 566
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	331
AfaI	GTAC	2 cut(s)	155, 167
AgsI	TTSAA	4 cut(s)	95, 148, 199, 206
AluBI	AGCT	3 cut(s)	98, 130, 314
AluI	AGCT	3 cut(s)	98, 130, 314
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	2 cut(s)	527, 547
AlwI	GGATC	3 cut(s)	386, 546, 566
Ama87I	CYCGRG	1 cut(s)	274
AoxI	GGCC	2 cut(s)	69, 323
ApeKI	GCWGC	4 cut(s)	307, 363, 442, 505
ApoI	RAATTY	1 cut(s)	143
AspLEI	GCGC	3 cut(s)	363, 391, 393
AspS9I	GGNCC	3 cut(s)	69, 323, 457
AsuC2I	CCSGG	1 cut(s)	330
AsuHPI	GGTGA	2 cut(s)	17, 395
AvaI	CYCGRG	1 cut(s)	274
AvaII	GGWCC	1 cut(s)	457
BanII	GRGCYC	1 cut(s)	316
Bbv12I	GWGCWC	1 cut(s)	316
BbvI	GCAGC	4 cut(s)	319, 350, 454, 517
BccI	CCATC	1 cut(s)	328
BcnI	CCSGG	1 cut(s)	330
BcoDI	GTCTC	2 cut(s)	527, 547
BfmI	CTRYAG	2 cut(s)	305, 544
BfuAI	ACCTGC	1 cut(s)	436
BisI	GCNGC	5 cut(s)	308, 326, 364, 443, 506
BlsI	GCNGC	5 cut(s)	309, 327, 365, 444, 507
Bme1390I	CCNGG	1 cut(s)	330
Bme18I	GGWCC	1 cut(s)	457
BmeT110I	CYCGRG	1 cut(s)	274
BmgT120I	GGNCC	3 cut(s)	69, 323, 457
BmiI	GGNNCC	1 cut(s)	458
BmrFI	CCNGG	1 cut(s)	330
BmsI	GCATC	3 cut(s)	348, 376, 516
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpmI	CTGGAG	1 cut(s)	542
BpuMI	CCSGG	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	72, 329
BsaWI	WCCGGW	1 cut(s)	459
Bse1I	ACTGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	72, 329
BseGI	GGATG	2 cut(s)	339, 363
BseMII	CTCAG	1 cut(s)	108
BseNI	ACTGG	1 cut(s)	266
BsePI	GCGCGC	1 cut(s)	389
BseRI	GAGGAG	1 cut(s)	74
BseXI	GCAGC	4 cut(s)	319, 350, 454, 517
BseYI	CCCAGC	2 cut(s)	340, 481
BsgI	GTGCAG	1 cut(s)	509
Bsh1236I	CGCG	3 cut(s)	355, 391, 393
BshFI	GGCC	2 cut(s)	71, 325
BsiHKAI	GWGCWC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	274
BsiSI	CCGG	4 cut(s)	329, 421, 460, 530
BsmAI	GTCTC	2 cut(s)	527, 547
BsmBI	CGTCTC	2 cut(s)	527, 547
BsmI	GAATGC	1 cut(s)	118
BsnI	GGCC	2 cut(s)	71, 325
BsoBI	CYCGRG	1 cut(s)	274
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	4 cut(s)	350, 378, 538, 558
BspACI	CCGC	6 cut(s)	257, 326, 355, 393, 452, 496
BspANI	GGCC	2 cut(s)	71, 325
BspCNI	CTCAG	1 cut(s)	109
BspFNI	CGCG	3 cut(s)	355, 391, 393
BspLI	GGNNCC	1 cut(s)	458
BspMAI	CTGCAG	1 cut(s)	309
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	3 cut(s)	386, 546, 566
BsrBI	CCGCTC	1 cut(s)	257
BsrI	ACTGG	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	72, 329
BssHII	GCGCGC	1 cut(s)	389
BssMI	GATC	4 cut(s)	350, 378, 538, 558
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	2 cut(s)	153, 545
Bst6I	CTCTTC	2 cut(s)	41, 47
BstC8I	GCNNGC	3 cut(s)	312, 391, 503
BstDEI	CTNAG	2 cut(s)	117, 246
BstF5I	GGATG	2 cut(s)	339, 363
BstFNI	CGCG	3 cut(s)	355, 391, 393
BstHHI	GCGC	3 cut(s)	363, 391, 393
BstKTI	GATC	4 cut(s)	353, 381, 541, 561
BstMAI	GTCTC	2 cut(s)	527, 547
BstMBI	GATC	4 cut(s)	350, 378, 538, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	487, 502, 526
BstSCI	CCNGG	1 cut(s)	328
BstSFI	CTRYAG	2 cut(s)	305, 544
BstUI	CGCG	3 cut(s)	355, 391, 393
BstV1I	GCAGC	4 cut(s)	319, 350, 454, 517
BsuRI	GGCC	2 cut(s)	71, 325
BtsCI	GGATG	2 cut(s)	339, 363
BtsI	GCAGTG	1 cut(s)	287
BtsIMutI	CAGTG	2 cut(s)	287, 541
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	3 cut(s)	312, 391, 503
CfoI	GCGC	3 cut(s)	363, 391, 393
Cfr13I	GGNCC	3 cut(s)	69, 323, 457
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	2 cut(s)	154, 166
CviQI	GTAC	2 cut(s)	154, 166
DdeI	CTNAG	2 cut(s)	117, 246
DpnI	GATC	4 cut(s)	352, 380, 540, 560
DpnII	GATC	4 cut(s)	350, 378, 538, 558
Eam1104I	CTCTTC	2 cut(s)	41, 47
EarI	CTCTTC	2 cut(s)	41, 47
Ecl136II	GAGCTC	1 cut(s)	314
Eco130I	CCWWGG	1 cut(s)	72
Eco24I	GRGCYC	1 cut(s)	316
Eco47I	GGWCC	1 cut(s)	457
Eco53kI	GAGCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	331
Eco88I	CYCGRG	1 cut(s)	274
EcoICRI	GAGCTC	1 cut(s)	314
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	316
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	2 cut(s)	527, 547
FaiI	YATR	3 cut(s)	231, 473, 514
FauI	CCCGC	2 cut(s)	386, 445
Fnu4HI	GCNGC	5 cut(s)	308, 326, 364, 443, 506
FokI	GGATG	2 cut(s)	346, 370
FriOI	GRGCYC	1 cut(s)	316
Fsp4HI	GCNGC	5 cut(s)	308, 326, 364, 443, 506
GlaI	GCGC	3 cut(s)	362, 390, 392
GluI	GCNGC	5 cut(s)	308, 326, 364, 443, 506
GsaI	CCCAGC	2 cut(s)	344, 485
GsuI	CTGGAG	1 cut(s)	542
HaeIII	GGCC	2 cut(s)	71, 325
HapII	CCGG	4 cut(s)	329, 421, 460, 530
HgaI	GACGC	1 cut(s)	497
HhaI	GCGC	3 cut(s)	363, 391, 393
Hin6I	GCGC	3 cut(s)	361, 389, 391
HinP1I	GCGC	3 cut(s)	361, 389, 391
HindIII	AAGCTT	2 cut(s)	96, 128
HinfI	GANTC	4 cut(s)	32, 225, 242, 430
HpaII	CCGG	4 cut(s)	329, 421, 460, 530
HphI	GGTGA	2 cut(s)	17, 395
Hpy166II	GTNNAC	1 cut(s)	156
Hpy188I	TCNGA	3 cut(s)	31, 350, 552
Hpy188III	TCNNGA	1 cut(s)	434
Hpy8I	GTNNAC	1 cut(s)	156
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	2 cut(s)	153, 545
HpyCH4V	TGCA	5 cut(s)	307, 366, 374, 490, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	487, 502, 526
HpyF3I	CTNAG	2 cut(s)	117, 246
HspAI	GCGC	3 cut(s)	361, 389, 391
Kzo9I	GATC	4 cut(s)	350, 378, 538, 558
LmnI	GCTCC	2 cut(s)	254, 465
Lsp1109I	GCAGC	4 cut(s)	319, 350, 454, 517
LweI	GCATC	3 cut(s)	348, 376, 516
MalI	GATC	4 cut(s)	352, 380, 540, 560
MbiI	CCGCTC	1 cut(s)	257
MboI	GATC	4 cut(s)	350, 378, 538, 558
MboII	GAAGA	4 cut(s)	58, 64, 118, 121
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	1 cut(s)	143
MlyI	GAGTC	2 cut(s)	41, 236
MmeI	TCCRAC	1 cut(s)	530
MnlI	CCTC	7 cut(s)	42, 52, 55, 215, 420, 469, 486
MspI	CCGG	4 cut(s)	329, 421, 460, 530
MspR9I	CCNGG	1 cut(s)	330
Mva1269I	GAATGC	1 cut(s)	118
MvnI	CGCG	3 cut(s)	355, 391, 393
MwoI	GCNNNNNNNGC	3 cut(s)	487, 502, 526
NciI	CCSGG	1 cut(s)	330
NdeII	GATC	4 cut(s)	350, 378, 538, 558
NlaIV	GGNNCC	1 cut(s)	458
PaqCI	CACCTGC	1 cut(s)	436
PauI	GCGCGC	1 cut(s)	389
PctI	GAATGC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	225, 430
PkrI	GCNGC	5 cut(s)	309, 327, 365, 444, 507
PleI	GAGTC	2 cut(s)	40, 236
PpsI	GAGTC	2 cut(s)	40, 236
Psp124BI	GAGCTC	1 cut(s)	316
PspFI	CCCAGC	2 cut(s)	340, 481
PspN4I	GGNNCC	1 cut(s)	458
PspPI	GGNCC	3 cut(s)	69, 323, 457
PstI	CTGCAG	1 cut(s)	309
PteI	GCGCGC	1 cut(s)	389
RsaI	GTAC	2 cut(s)	155, 167
RsaNI	GTAC	2 cut(s)	154, 166
SacI	GAGCTC	1 cut(s)	316
SatI	GCNGC	5 cut(s)	308, 326, 364, 443, 506
Sau3AI	GATC	4 cut(s)	350, 378, 538, 558
Sau96I	GGNCC	3 cut(s)	69, 323, 457
SchI	GAGTC	2 cut(s)	41, 236
ScrFI	CCNGG	1 cut(s)	330
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	6 cut(s)	21, 100, 132, 316, 450, 480
SfaNI	GCATC	3 cut(s)	348, 376, 516
SfcI	CTRYAG	2 cut(s)	305, 544
SinI	GGWCC	1 cut(s)	457
Sse9I	AATT	1 cut(s)	143
SsiI	CCGC	6 cut(s)	257, 326, 355, 393, 452, 496
SstI	GAGCTC	1 cut(s)	316
StyD4I	CCNGG	1 cut(s)	328
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	153, 545
TasI	AATT	1 cut(s)	143
TatI	WGTACW	1 cut(s)	153
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	2 cut(s)	225, 430
TscAI	CASTG	2 cut(s)	287, 548
TseI	GCWGC	4 cut(s)	307, 363, 442, 505
TspGWI	ACGGA	1 cut(s)	551
TspRI	CASTG	2 cut(s)	287, 548
VpaK11BI	GGWCC	1 cut(s)	457
XapI	RAATTY	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.