Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004257

Physical Location & Seq

Genomic Coordinates Forward (+)

21835734 .. 21837865

Gene Structure 2132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG119800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGAAAAATGCGGTGAAGGGCATGGGAGGGAATGACGCGAGTAAAATGCAGTCTTCCACGGTGGGAATGTCCAACAATGACAGCAATGGAGAATTTCATATGCCAAATAAGAAGGCTGAAAGAAGCGTAAGGGAAGATGTGAATGTGGGAGTTGGGTCGGAGCTGTCATGTAGCCCAATAGGAAAACACAGCATAGAAAGGCAGGAAAATATGAATACCGCAGACATAATCTGGAGTAGTTTGAAGCGAAGTCATCCGAGTGTGATGTATAGTGAATTTAGTGAATATGAGGCATGTGCAAGTATTTTAAAGGACAAAGTGGGGATGTCGCAGTCTGATAGTGGGGTAAATATTAGATATGGAGCTAGGCCCTATAGGCTAAAAGTAAAACTATCTGAGGCTGAAGTAAGAAGTATAGACTCTGTGTATTTGGACGGGAAACATCTGACGGAAGAAGAAGGAAGATCTAAAAATTCGGAGCGTAAAAGATTCACGCAGTGGGTGGCACATACCAGGAGAGTTTGCGGTCTCCAAAGGTTTGATAGTAGGATCGACACTTGTGAGAGGTACGACCCGGAAGAACAGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

196

Amino Acids

22.16

Weight (kDa)

8.31

Isoelectric Point (pI)

66.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004257)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404281 RchiOBHm_Chr4g0405601 RchiOBHm_Chr4g0416011 RchiOBHm_Chr6g0272841
rosa_multiflora	Rmu_sc0000272.1_g000010 Rmu_sc0000533.1_g000058 Rmu_sc0000683.1_g000005 Rmu_sc0002798.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005510 Rroxscaffold_1G00054810 Rroxscaffold_1G00055880 Rroxscaffold_2G00087770
rosa_rugosa	Rorug02G0232900 Rorug04G0335200
rosa_samantha	Rh1AG115100 Rh1AG115200 Rh1BG108300 Rh1CG111100 Rh1CG146400 Rh1DG119800 Rh1DG119900 Rh2AG175000 Rh2CG179500 Rh2DG181400 Rh4AG148900 Rh4AG161700 Rh4CG155600 Rh5CG070700 Rh5DG564800 Rh6DG180600 Rh7AG378500 Rh7BG442400
rosa_wichuraiana	Rw7G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AciI	CCGC	3 cut(s)	11, 219, 525
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	3 cut(s)	92, 275, 472
AcuI	CTGAAG	1 cut(s)	423
AdeI	CACNNNGTG	1 cut(s)	498
AfaI	GTAC	1 cut(s)	569
AgsI	TTSAA	1 cut(s)	244
AjnI	CCWGG	1 cut(s)	512
AluBI	AGCT	2 cut(s)	163, 365
AluI	AGCT	2 cut(s)	163, 365
Alw26I	GTCTC	1 cut(s)	533
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	1 cut(s)	368
ApoI	RAATTY	3 cut(s)	92, 275, 472
AspS9I	GGNCC	1 cut(s)	369
AsuC2I	CCSGG	1 cut(s)	575
AsuHPI	GGTGA	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	45
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	514
BcnI	CCSGG	1 cut(s)	575
BcoDI	GTCTC	1 cut(s)	533
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	373
BglI	GCCNNNNNGGC	1 cut(s)	376
BglII	AGATCT	1 cut(s)	464
Bme1390I	CCNGG	2 cut(s)	514, 575
BmgT120I	GGNCC	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	514, 575
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	575
BsaI	GGTCTC	1 cut(s)	533
BsaJI	CCNNGG	1 cut(s)	57
Bse3DI	GCAATG	1 cut(s)	91
BseBI	CCWGG	1 cut(s)	514
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	2 cut(s)	253, 330
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	1 cut(s)	387
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	575
BsmAI	GTCTC	1 cut(s)	533
BsnI	GGCC	1 cut(s)	370
Bso31I	GGTCTC	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	464, 549
BspACI	CCGC	3 cut(s)	11, 219, 525
BspANI	GGCC	1 cut(s)	370
BspCNI	CTCAG	1 cut(s)	388
BspFNI	CGCG	1 cut(s)	38
BspPI	GGATC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	533
BsrDI	GCAATG	1 cut(s)	91
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	2 cut(s)	464, 549
Bst2UI	CCWGG	1 cut(s)	514
Bst4CI	ACNGT	1 cut(s)	61
BstDEI	CTNAG	1 cut(s)	396
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	2 cut(s)	253, 330
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	2 cut(s)	467, 552
BstMAI	GTCTC	1 cut(s)	533
BstMBI	GATC	2 cut(s)	464, 549
BstMWI	GCNNNNNNNGC	1 cut(s)	376
BstNI	CCWGG	1 cut(s)	514
BstNSI	RCATGY	1 cut(s)	297
BstSCI	CCNGG	2 cut(s)	512, 573
BstSFI	CTRYAG	1 cut(s)	373
BstUI	CGCG	1 cut(s)	38
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	1 cut(s)	464
BstYI	RGATCY	1 cut(s)	464
BsuRI	GGCC	1 cut(s)	370
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	2 cut(s)	253, 330
BtsI	GCAGTG	1 cut(s)	503
BtsIMutI	CAGTG	1 cut(s)	503
Cfr13I	GGNCC	1 cut(s)	369
CseI	GACGC	1 cut(s)	44
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	3 cut(s)	22, 168, 294
CviJI	RGCY	7 cut(s)	116, 163, 174, 365, 370, 379, 401
CviKI_1	RGCY	7 cut(s)	116, 163, 174, 365, 370, 379, 401
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	1 cut(s)	396
DpnI	GATC	2 cut(s)	466, 551
DpnII	GATC	2 cut(s)	464, 549
DraI	TTTAAA	1 cut(s)	309
DraIII	CACNNNGTG	1 cut(s)	498
Eco31I	GGTCTC	1 cut(s)	533
Eco57I	CTGAAG	1 cut(s)	423
EcoO109I	RGGNCCY	1 cut(s)	369
EcoRII	CCWGG	1 cut(s)	512
FaeI	CATG	3 cut(s)	25, 171, 297
FatI	CATG	3 cut(s)	21, 167, 293
FauNDI	CATATG	1 cut(s)	99
FokI	GGATG	2 cut(s)	240, 337
FspBI	CTAG	1 cut(s)	366
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	1 cut(s)	370
HapII	CCGG	1 cut(s)	575
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	3 cut(s)	25, 171, 297
HinfI	GANTC	2 cut(s)	419, 489
HpaII	CCGG	1 cut(s)	575
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	6 cut(s)	160, 258, 337, 397, 447, 478
Hpy188III	TCNNGA	1 cut(s)	232
HpyAV	CCTTC	3 cut(s)	10, 106, 452
HpyCH4III	ACNGT	1 cut(s)	61
HpyCH4V	TGCA	2 cut(s)	49, 299
HpyF10VI	GCNNNNNNNGC	1 cut(s)	376
HpyF3I	CTNAG	1 cut(s)	396
Hsp92II	CATG	3 cut(s)	25, 171, 297
Kzo9I	GATC	2 cut(s)	464, 549
LmnI	GCTCC	3 cut(s)	160, 362, 478
LpnPI	CCDG	4 cut(s)	188, 217, 499, 526
MaeI	CTAG	1 cut(s)	366
MalI	GATC	2 cut(s)	466, 551
MboI	GATC	2 cut(s)	464, 549
MboII	GAAGA	6 cut(s)	45, 146, 464, 467, 474, 590
MflI	RGATCY	1 cut(s)	464
MluCI	AATT	3 cut(s)	92, 275, 472
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	2 cut(s)	96, 138
MnlI	CCTC	4 cut(s)	20, 283, 391, 558
MseI	TTAA	1 cut(s)	308
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	1 cut(s)	575
MspR9I	CCNGG	2 cut(s)	514, 575
MvaI	CCWGG	1 cut(s)	514
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	376
NciI	CCSGG	1 cut(s)	575
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	2 cut(s)	464, 549
NlaIII	CATG	3 cut(s)	25, 171, 297
NspI	RCATGY	1 cut(s)	297
PfeI	GAWTC	1 cut(s)	489
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
Psp6I	CCWGG	1 cut(s)	512
PspGI	CCWGG	1 cut(s)	512
PspPI	GGNCC	1 cut(s)	369
PsuI	RGATCY	1 cut(s)	464
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	1 cut(s)	308
Sau3AI	GATC	2 cut(s)	464, 549
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	514, 575
SetI	ASST	4 cut(s)	165, 367, 539, 569
SfcI	CTRYAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	258
Sse9I	AATT	3 cut(s)	92, 275, 472
SsiI	CCGC	3 cut(s)	11, 219, 525
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	2 cut(s)	512, 573
TaaI	ACNGT	1 cut(s)	61
TaqI	TCGA	1 cut(s)	552
TasI	AATT	3 cut(s)	92, 275, 472
TfiI	GAWTC	1 cut(s)	489
Tru1I	TTAA	1 cut(s)	308
Tru9I	TTAA	1 cut(s)	308
TscAI	CASTG	1 cut(s)	503
TspDTI	ATGAA	3 cut(s)	17, 86, 227
TspGWI	ACGGA	1 cut(s)	464
TspRI	CASTG	1 cut(s)	503
XapI	RAATTY	3 cut(s)	92, 275, 472
XceI	RCATGY	1 cut(s)	297
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.