Rh7AG378500

60S ribosomal Protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0004257
Physical Location & Seq
Reverse (-)
49338758 .. 49360165
21408 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG378500.1

Sequence Viewer

Length: 447 bp
ATGAACTTTTCACATGATATGGATGATGAATATGAGAAAAGTGGCAGGAGAATGAACCCAAAATTTCAAGCTGAAGCATACTGGACCAGTACATTCATTTATCTGCGATCCACATTTGTAGAGATCGGTGAAGTAGTCAAGGTAGTGGTTCCAGAGTCTGTTCTAAAGAAGAGGAAGAGAGAGGAGGAATGGGCCTTGGCAAAGAAACAGGGGCTTGAAGCCACCAAGAAGAAGAATGCTAAGAATAGGAAGCTTATTTACAACAAATCCAAACAGTACACCAAGGAGTACGCAAAGAAGGACAATGAGTTAGTCCAGTTGAAGCGTGAAGCAAGGCTGAAAGGAGGATTCTATGTTGAGCCAGAGTCTAAGCTTTTGTTTATCATTCGTATATGTGGTATCAACGCCATTGATCCAAAGACAAAGAAGATCTTGCAGTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

148

Amino Acids

17.49

Weight (kDa)

9.75

Isoelectric Point (pI)

39.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_L30_N PF08079 50 - 121 6.3e-22 Ribosomal L30 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 102, 407
AcsI RAATTY 1 cut(s) 62
AcuI CTGAAG 1 cut(s) 93
AfaI GTAC 3 cut(s) 91, 278, 290
AgsI TTSAA 3 cut(s) 68, 218, 322
AluBI AGCT 3 cut(s) 71, 253, 373
AluI AGCT 3 cut(s) 71, 253, 373
AlwI GGATC 2 cut(s) 102, 407
AlwNI CAGNNNCTG 1 cut(s) 158
AoxI GGCC 1 cut(s) 192
ApoI RAATTY 1 cut(s) 62
AspS9I GGNCC 2 cut(s) 84, 192
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 84
BarI GAAGNNNNNNTAC 2 cut(s) 242, 274
BglII AGATCT 1 cut(s) 429
Bme18I GGWCC 1 cut(s) 84
BmgT120I GGNCC 2 cut(s) 84, 192
BmiI GGNNCC 1 cut(s) 150
BsaJI CCNNGG 2 cut(s) 195, 282
Bse1I ACTGG 3 cut(s) 86, 87, 316
BseDI CCNNGG 2 cut(s) 195, 282
BseGI GGATG 1 cut(s) 28
BseNI ACTGG 3 cut(s) 86, 87, 316
BseRI GAGGAG 1 cut(s) 197
BshFI GGCC 1 cut(s) 194
BsmI GAATGC 1 cut(s) 241
BsnI GGCC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 107, 123, 412, 429
BspANI GGCC 1 cut(s) 194
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 2 cut(s) 102, 407
BsrI ACTGG 3 cut(s) 86, 87, 316
BssECI CCNNGG 2 cut(s) 195, 282
BssMI GATC 4 cut(s) 107, 123, 412, 429
BssT1I CCWWGG 2 cut(s) 195, 282
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 2 cut(s) 164, 170
BstDEI CTNAG 2 cut(s) 240, 369
BstF5I GGATG 1 cut(s) 28
BstKTI GATC 4 cut(s) 110, 126, 415, 432
BstMBI GATC 4 cut(s) 107, 123, 412, 429
BstX2I RGATCY 1 cut(s) 429
BstYI RGATCY 1 cut(s) 429
BsuRI GGCC 1 cut(s) 194
BtsCI GGATG 1 cut(s) 28
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 84, 192
Csp6I GTAC 3 cut(s) 90, 277, 289
CviAII CATG 1 cut(s) 14
CviJI RGCY 8 cut(s) 71, 194, 214, 221, 253, 337, 361, 373
CviKI_1 RGCY 8 cut(s) 71, 194, 214, 221, 253, 337, 361, 373
CviQI GTAC 3 cut(s) 90, 277, 289
DdeI CTNAG 2 cut(s) 240, 369
DpnI GATC 4 cut(s) 109, 125, 414, 431
DpnII GATC 4 cut(s) 107, 123, 412, 429
Eam1104I CTCTTC 2 cut(s) 164, 170
EarI CTCTTC 2 cut(s) 164, 170
Eco130I CCWWGG 2 cut(s) 195, 282
Eco47I GGWCC 1 cut(s) 84
Eco57I CTGAAG 1 cut(s) 93
EcoT14I CCWWGG 2 cut(s) 195, 282
ErhI CCWWGG 2 cut(s) 195, 282
FaeI CATG 1 cut(s) 17
FaiI YATR 7 cut(s) 15, 20, 33, 79, 354, 392, 394
FalI AAGNNNNNCTT 1 cut(s) 416
FatI CATG 1 cut(s) 13
FokI GGATG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 194
Hin1II CATG 1 cut(s) 17
HindIII AAGCTT 2 cut(s) 251, 371
HinfI GANTC 3 cut(s) 155, 348, 365
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 279
Hpy188III TCNNGA 1 cut(s) 152
Hpy8I GTNNAC 1 cut(s) 279
HpyAV CCTTC 1 cut(s) 292
HpyCH4III ACNGT 1 cut(s) 276
HpyCH4V TGCA 1 cut(s) 436
HpyF3I CTNAG 2 cut(s) 240, 369
Hsp92II CATG 1 cut(s) 17
Kzo9I GATC 4 cut(s) 107, 123, 412, 429
LpnPI CCDG 7 cut(s) 31, 67, 100, 165, 194, 329, 375
MalI GATC 4 cut(s) 109, 125, 414, 431
MboI GATC 4 cut(s) 107, 123, 412, 429
MboII GAAGA 5 cut(s) 181, 187, 241, 244, 439
MflI RGATCY 1 cut(s) 429
MluCI AATT 1 cut(s) 62
MlyI GAGTC 2 cut(s) 164, 374
MnlI CCTC 4 cut(s) 165, 175, 178, 338
Mva1269I GAATGC 1 cut(s) 241
NdeII GATC 4 cut(s) 107, 123, 412, 429
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 1 cut(s) 150
PctI GAATGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 348
PleI GAGTC 2 cut(s) 163, 373
PpsI GAGTC 2 cut(s) 163, 373
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 2 cut(s) 84, 192
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 429
RsaI GTAC 3 cut(s) 91, 278, 290
RsaNI GTAC 3 cut(s) 90, 277, 289
Sau3AI GATC 4 cut(s) 107, 123, 412, 429
Sau96I GGNCC 2 cut(s) 84, 192
SchI GAGTC 2 cut(s) 164, 374
SetI ASST 4 cut(s) 73, 144, 255, 375
SinI GGWCC 1 cut(s) 84
Sse9I AATT 1 cut(s) 62
StyI CCWWGG 2 cut(s) 195, 282
TaaI ACNGT 1 cut(s) 276
TasI AATT 1 cut(s) 62
TatI WGTACW 2 cut(s) 89, 276
TfiI GAWTC 1 cut(s) 348
TspDTI ATGAA 4 cut(s) 17, 42, 68, 85
VpaK11BI GGWCC 1 cut(s) 84
XapI RAATTY 1 cut(s) 62
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.