Rh7BG442400

60S ribosomal protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004257
Physical Location & Seq
Reverse (-)
51130665 .. 51132880
2216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG442400.1

Sequence Viewer

Length: 378 bp
ATGGGTGAAGCAGTCAAGGTAGTGGTTCCGGAGTCTGTTCTAAAGAAGAGGAAGAGAGAGGAGGAATGGGCCTTGGCAAAGAAGCAGGGGCTTGAGCCGCCAAGAAAAAGAATGCTGAGAATAGGAAGCTTATTTACAACAAATCCAAACAGTACACCAAGGAGTACGCAGAGAAGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAACTTTTATTGAACAATACCGAGCTGAGATCAAGAGACTTCAGCAATCTGAGGCAGAAATTAAAGCATTATAAAAAAAACTATGCAGCTTTGTTAAAGGAAAAGGAGATACCCCAACCTGAAGAGTGTGAAGGAATTCATTTACGAGACAAGTTGAACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

125

Amino Acids

14.57

Weight (kDa)

10.17

Isoelectric Point (pI)

64.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 285
AccIII TCCGGA 1 cut(s) 28
AciI CCGC 1 cut(s) 98
AclWI GGATC 1 cut(s) 185
AcsI RAATTY 1 cut(s) 348
AcuI CTGAAG 2 cut(s) 238, 354
AfaI GTAC 2 cut(s) 154, 166
AgsI TTSAA 2 cut(s) 226, 370
AluBI AGCT 3 cut(s) 129, 238, 302
AluI AGCT 3 cut(s) 129, 238, 302
Alw26I GTCTC 2 cut(s) 243, 354
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 28
AoxI GGCC 1 cut(s) 69
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 348
Asp700I GAANNNNTTC 1 cut(s) 348
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 118, 150
BbvI GCAGC 1 cut(s) 311
BcoDI GTCTC 2 cut(s) 243, 354
BglII AGATCT 1 cut(s) 207
BisI GCNGC 2 cut(s) 98, 300
BlsI GCNGC 2 cut(s) 99, 301
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 113
BsaJI CCNNGG 2 cut(s) 72, 158
BsaWI WCCGGW 1 cut(s) 28
BseAI TCCGGA 1 cut(s) 28
BseDI CCNNGG 2 cut(s) 72, 158
BseMII CTCAG 3 cut(s) 107, 230, 254
BseRI GAGGAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 311
BshFI GGCC 1 cut(s) 71
BsiSI CCGG 1 cut(s) 29
BsmAI GTCTC 2 cut(s) 243, 354
BsmI GAATGC 1 cut(s) 117
BsnI GGCC 1 cut(s) 71
Bsp13I TCCGGA 1 cut(s) 28
Bsp143I GATC 3 cut(s) 190, 207, 242
BspACI CCGC 1 cut(s) 98
BspANI GGCC 1 cut(s) 71
BspCNI CTCAG 3 cut(s) 108, 231, 255
BspEI TCCGGA 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 27
BspPI GGATC 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 72, 158
BssMI GATC 3 cut(s) 190, 207, 242
BssT1I CCWWGG 2 cut(s) 72, 158
Bst4CI ACNGT 1 cut(s) 152
Bst6I CTCTTC 3 cut(s) 41, 47, 330
BstDEI CTNAG 3 cut(s) 116, 239, 263
BstKTI GATC 3 cut(s) 193, 210, 245
BstMAI GTCTC 2 cut(s) 243, 354
BstMBI GATC 3 cut(s) 190, 207, 242
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 311
BstX2I RGATCY 1 cut(s) 207
BstYI RGATCY 1 cut(s) 207
BsuRI GGCC 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 2 cut(s) 153, 165
CviJI RGCY 6 cut(s) 71, 91, 97, 129, 238, 302
CviKI_1 RGCY 6 cut(s) 71, 91, 97, 129, 238, 302
CviQI GTAC 2 cut(s) 153, 165
DdeI CTNAG 3 cut(s) 116, 239, 263
DpnI GATC 3 cut(s) 192, 209, 244
DpnII GATC 3 cut(s) 190, 207, 242
Eam1104I CTCTTC 3 cut(s) 41, 47, 330
EarI CTCTTC 3 cut(s) 41, 47, 330
Eco130I CCWWGG 2 cut(s) 72, 158
Eco57I CTGAAG 2 cut(s) 238, 354
EcoRI GAATTC 1 cut(s) 348
EcoT14I CCWWGG 2 cut(s) 72, 158
ErhI CCWWGG 2 cut(s) 72, 158
FaiI YATR 2 cut(s) 285, 297
FalI AAGNNNNNCTT 2 cut(s) 194, 226
Fnu4HI GCNGC 2 cut(s) 98, 300
Fsp4HI GCNGC 2 cut(s) 98, 300
GluI GCNGC 2 cut(s) 98, 300
HaeIII GGCC 1 cut(s) 71
HapII CCGG 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 127
HinfI GANTC 1 cut(s) 32
HpaII CCGG 1 cut(s) 29
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 155
Hpy188I TCNGA 1 cut(s) 264
Hpy188III TCNNGA 2 cut(s) 29, 246
Hpy8I GTNNAC 1 cut(s) 155
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4V TGCA 2 cut(s) 214, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 3 cut(s) 116, 239, 263
Kpn2I TCCGGA 1 cut(s) 28
Kzo9I GATC 3 cut(s) 190, 207, 242
LpnPI CCDG 3 cut(s) 42, 71, 345
Lsp1109I GCAGC 1 cut(s) 311
MalI GATC 3 cut(s) 192, 209, 244
MboI GATC 3 cut(s) 190, 207, 242
MboII GAAGA 4 cut(s) 58, 64, 217, 347
MflI RGATCY 1 cut(s) 207
MluCI AATT 2 cut(s) 272, 348
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 4 cut(s) 42, 52, 55, 258
MroI TCCGGA 1 cut(s) 28
MroXI GAANNNNTTC 1 cut(s) 348
MseI TTAA 2 cut(s) 275, 308
MspI CCGG 1 cut(s) 29
Mva1269I GAATGC 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 3 cut(s) 190, 207, 242
NlaIV GGNNCC 1 cut(s) 27
PctI GAATGC 1 cut(s) 117
PdmI GAANNNNTTC 1 cut(s) 348
PkrI GCNGC 2 cut(s) 99, 301
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
PsiI TTATAA 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 1 cut(s) 69
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 2 cut(s) 154, 166
RsaNI GTAC 2 cut(s) 153, 165
SaqAI TTAA 2 cut(s) 275, 308
SatI GCNGC 2 cut(s) 98, 300
Sau3AI GATC 3 cut(s) 190, 207, 242
Sau96I GGNCC 1 cut(s) 69
SchI GAGTC 1 cut(s) 41
SetI ASST 5 cut(s) 21, 131, 240, 304, 334
SmlI CTYRAG 1 cut(s) 92
SmoI CTYRAG 1 cut(s) 92
Sse9I AATT 2 cut(s) 272, 348
SsiI CCGC 1 cut(s) 98
StyI CCWWGG 2 cut(s) 72, 158
TaaI ACNGT 1 cut(s) 152
TasI AATT 2 cut(s) 272, 348
TatI WGTACW 1 cut(s) 152
TauI GCSGC 1 cut(s) 100
Tru1I TTAA 2 cut(s) 275, 308
Tru9I TTAA 2 cut(s) 275, 308
TseI GCWGC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 341
XapI RAATTY 1 cut(s) 348
XmnI GAANNNNTTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.