ATP-dependent Clp protease ATP-binding subunit clpX-like
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0404281 RchiOBHm_Chr4g0405601 RchiOBHm_Chr4g0416011 RchiOBHm_Chr6g0272841 |
| rosa_multiflora | Rmu_sc0000272.1_g000010 Rmu_sc0000533.1_g000058 Rmu_sc0000683.1_g000005 Rmu_sc0002798.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00005510 Rroxscaffold_1G00054810 Rroxscaffold_1G00055880 Rroxscaffold_2G00087770 |
| rosa_rugosa | Rorug02G0232900 Rorug04G0335200 |
| rosa_samantha | Rh1AG115100 Rh1AG115200 Rh1BG108300 Rh1CG111100 Rh1CG146400 Rh1DG119800 Rh1DG119900 Rh2AG175000 Rh2CG179500 Rh2DG181400 Rh4AG148900 Rh4AG161700 Rh4CG155600 Rh5CG070700 Rh5DG564800 Rh6DG180600 Rh7AG378500 Rh7BG442400 |
| rosa_wichuraiana | Rw7G037910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 134 |
| AluBI | AGCT | 1 cut(s) | 163 |
| AluI | AGCT | 1 cut(s) | 163 |
| Alw21I | GWGCWC | 1 cut(s) | 91 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 131 |
| ApeKI | GCWGC | 1 cut(s) | 131 |
| BbsI | GAAGAC | 1 cut(s) | 64 |
| Bbv12I | GWGCWC | 1 cut(s) | 91 |
| BbvI | GCAGC | 1 cut(s) | 118 |
| BfaI | CTAG | 1 cut(s) | 202 |
| BisI | GCNGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 1 cut(s) | 133 |
| BmsI | GCATC | 1 cut(s) | 118 |
| BpiI | GAAGAC | 1 cut(s) | 64 |
| BpmI | CTGGAG | 1 cut(s) | 75 |
| BsaJI | CCNNGG | 1 cut(s) | 196 |
| Bse1I | ACTGG | 2 cut(s) | 92, 118 |
| BseDI | CCNNGG | 1 cut(s) | 196 |
| BseGI | GGATG | 1 cut(s) | 143 |
| BseNI | ACTGG | 2 cut(s) | 92, 118 |
| BseXI | GCAGC | 1 cut(s) | 118 |
| BsiHKAI | GWGCWC | 1 cut(s) | 91 |
| Bsp1286I | GDGCHC | 1 cut(s) | 91 |
| BspACI | CCGC | 1 cut(s) | 134 |
| BspHI | TCATGA | 1 cut(s) | 43 |
| BsrI | ACTGG | 2 cut(s) | 92, 118 |
| BssECI | CCNNGG | 1 cut(s) | 196 |
| BssT1I | CCWWGG | 1 cut(s) | 196 |
| Bst4CI | ACNGT | 1 cut(s) | 20 |
| BstF5I | GGATG | 1 cut(s) | 143 |
| BstV1I | GCAGC | 1 cut(s) | 118 |
| BstV2I | GAAGAC | 1 cut(s) | 64 |
| BtsCI | GGATG | 1 cut(s) | 143 |
| CaiI | CAGNNNCTG | 1 cut(s) | 131 |
| CciI | TCATGA | 1 cut(s) | 43 |
| CviAII | CATG | 2 cut(s) | 44, 106 |
| CviJI | RGCY | 2 cut(s) | 163, 201 |
| CviKI_1 | RGCY | 2 cut(s) | 163, 201 |
| Eco130I | CCWWGG | 1 cut(s) | 196 |
| EcoT14I | CCWWGG | 1 cut(s) | 196 |
| ErhI | CCWWGG | 1 cut(s) | 196 |
| FaeI | CATG | 2 cut(s) | 47, 109 |
| FaiI | YATR | 5 cut(s) | 45, 98, 107, 178, 180 |
| FatI | CATG | 2 cut(s) | 43, 105 |
| Fnu4HI | GCNGC | 1 cut(s) | 132 |
| FokI | GGATG | 1 cut(s) | 130 |
| Fsp4HI | GCNGC | 1 cut(s) | 132 |
| FspBI | CTAG | 1 cut(s) | 202 |
| GluI | GCNGC | 1 cut(s) | 132 |
| GsuI | CTGGAG | 1 cut(s) | 75 |
| Hin1II | CATG | 2 cut(s) | 47, 109 |
| HinfI | GANTC | 1 cut(s) | 60 |
| Hpy188III | TCNNGA | 1 cut(s) | 44 |
| HpyAV | CCTTC | 1 cut(s) | 47 |
| HpyCH4III | ACNGT | 1 cut(s) | 20 |
| Hsp92II | CATG | 2 cut(s) | 47, 109 |
| LmnI | GCTCC | 1 cut(s) | 94 |
| LpnPI | CCDG | 2 cut(s) | 99, 105 |
| Lsp1109I | GCAGC | 1 cut(s) | 118 |
| LweI | GCATC | 1 cut(s) | 118 |
| MaeI | CTAG | 1 cut(s) | 202 |
| MaeIII | GTNAC | 2 cut(s) | 121, 136 |
| MboII | GAAGA | 1 cut(s) | 69 |
| MhlI | GDGCHC | 1 cut(s) | 91 |
| MlyI | GAGTC | 1 cut(s) | 54 |
| NlaIII | CATG | 2 cut(s) | 47, 109 |
| PagI | TCATGA | 1 cut(s) | 43 |
| PkrI | GCNGC | 1 cut(s) | 133 |
| PleI | GAGTC | 1 cut(s) | 54 |
| PpsI | GAGTC | 1 cut(s) | 54 |
| PstNI | CAGNNNCTG | 1 cut(s) | 131 |
| SatI | GCNGC | 1 cut(s) | 132 |
| SchI | GAGTC | 1 cut(s) | 54 |
| SduI | GDGCHC | 1 cut(s) | 91 |
| SetI | ASST | 2 cut(s) | 88, 165 |
| SfaNI | GCATC | 1 cut(s) | 118 |
| SgeI | CNNG | 5 cut(s) | 56, 77, 104, 118, 126 |
| SsiI | CCGC | 1 cut(s) | 134 |
| SspMI | CTAG | 1 cut(s) | 202 |
| StyI | CCWWGG | 1 cut(s) | 196 |
| TaaI | ACNGT | 1 cut(s) | 20 |
| TseI | GCWGC | 1 cut(s) | 131 |
| TspDTI | ATGAA | 1 cut(s) | 12 |
| XspI | CTAG | 1 cut(s) | 202 |