Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0004257

Physical Location & Seq

Genomic Coordinates Forward (+)

76178157 .. 76180082

Gene Structure 1926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00054810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAATCGGGACCAACAGCTGCAAGTCTGCAAGACCGCAACCCAATTGCAAACCCAGACAGCCCTTCAAGTGGCTCCGTCCCTGATCACATGTCTTCGTCCTTTCCGAGCTTTGTTGCCAAGGTAGATCCAGTAGCCACTAGCCAAGGTAATAGAATAGATCTGAGTTTAAAAGATCCGAGCTTTGTTGCCAAGGACAGCGAGTTGGTCCGGTCGAATTGCGAAGCAAGGCTAAAAGGAGGATGTATAGCTTTATCAGTGGATTTGGTCTATTGTCTTAGAATTCTTCTGTTTTACACTTACACTTTGTATCTTGATCTGAAACTCCAAGATTGCTCTATTGGGTTAGGTGCTCCAGTTATAGCAAACATGAGAACTGGTGGTGTTACAGATGCTGCGGTTACATCATCCTTATTGGAGATTGAGCTGTGTCAAAGATTATATGGAGAGAACAAGCACCAAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004176 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006508 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008233 GO:0009056 GO:0009057 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0019538 GO:0030163 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0042623 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0070011 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04112 map04112

Pfam Domains

Protein Families

AAA_2 ClpB_D2-small

Protein Analysis

155

Amino Acids

16.58

Weight (kDa)

5.05

Isoelectric Point (pI)

46.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004257)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404281 RchiOBHm_Chr4g0405601 RchiOBHm_Chr4g0416011 RchiOBHm_Chr6g0272841
rosa_multiflora	Rmu_sc0000272.1_g000010 Rmu_sc0000533.1_g000058 Rmu_sc0000683.1_g000005 Rmu_sc0002798.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005510 Rroxscaffold_1G00054810 Rroxscaffold_1G00055880 Rroxscaffold_2G00087770
rosa_rugosa	Rorug02G0232900 Rorug04G0335200
rosa_samantha	Rh1AG115100 Rh1AG115200 Rh1BG108300 Rh1CG111100 Rh1CG146400 Rh1DG119800 Rh1DG119900 Rh2AG175000 Rh2CG179500 Rh2DG181400 Rh4AG148900 Rh4AG161700 Rh4CG155600 Rh5CG070700 Rh5DG564800 Rh6DG180600 Rh7AG378500 Rh7BG442400
rosa_wichuraiana	Rw7G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	37, 398
AclWI	GGATC	2 cut(s)	122, 170
AcsI	RAATTY	1 cut(s)	282
AfiI	CCNNNNNNNGG	1 cut(s)	71
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	1 cut(s)	69
AluBI	AGCT	5 cut(s)	20, 111, 183, 251, 427
AluI	AGCT	5 cut(s)	20, 111, 183, 251, 427
Alw21I	GWGCWC	1 cut(s)	355
AlwI	GGATC	2 cut(s)	122, 170
AlwNI	CAGNNNCTG	1 cut(s)	395
ApeKI	GCWGC	2 cut(s)	20, 395
ApoI	RAATTY	1 cut(s)	282
AspS9I	GGNCC	2 cut(s)	11, 208
AvaII	GGWCC	2 cut(s)	11, 208
BbsI	GAAGAC	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	7, 382
BclI	TGATCA	1 cut(s)	85
BfaI	CTAG	2 cut(s)	141, 466
BglII	AGATCT	1 cut(s)	160
BisI	GCNGC	2 cut(s)	21, 396
BlsI	GCNGC	2 cut(s)	22, 397
Bme18I	GGWCC	2 cut(s)	11, 208
BmgT120I	GGNCC	2 cut(s)	11, 208
BmiI	GGNNCC	2 cut(s)	12, 76
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	339
BsaJI	CCNNGG	4 cut(s)	120, 145, 192, 460
BsaWI	WCCGGW	1 cut(s)	210
Bsc4I	CCNNNNNNNGG	1 cut(s)	71
Bse1I	ACTGG	3 cut(s)	131, 356, 382
BseDI	CCNNGG	4 cut(s)	120, 145, 192, 460
BseGI	GGATG	2 cut(s)	248, 407
BseLI	CCNNNNNNNGG	1 cut(s)	71
BseMII	CTCAG	1 cut(s)	155
BseNI	ACTGG	3 cut(s)	131, 356, 382
BseXI	GCAGC	2 cut(s)	7, 382
Bsh1285I	CGRYCG	1 cut(s)	215
BsiEI	CGRYCG	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	2 cut(s)	24, 65
BslI	CCNNNNNNNGG	1 cut(s)	71
BsmFI	GGGAC	2 cut(s)	24, 65
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	5 cut(s)	85, 127, 160, 175, 316
BspACI	CCGC	2 cut(s)	37, 398
BspCNI	CTCAG	1 cut(s)	156
BspLI	GGNNCC	2 cut(s)	12, 76
BspPI	GGATC	2 cut(s)	122, 170
BsrI	ACTGG	3 cut(s)	131, 356, 382
BssECI	CCNNGG	4 cut(s)	120, 145, 192, 460
BssMI	GATC	5 cut(s)	85, 127, 160, 175, 316
BssT1I	CCWWGG	4 cut(s)	120, 145, 192, 460
BstDEI	CTNAG	2 cut(s)	164, 278
BstF5I	GGATG	2 cut(s)	248, 407
BstKTI	GATC	5 cut(s)	88, 130, 163, 178, 319
BstMBI	GATC	5 cut(s)	85, 127, 160, 175, 316
BstMCI	CGRYCG	1 cut(s)	215
BstNSI	RCATGY	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	7, 382
BstV2I	GAAGAC	1 cut(s)	87
BstX2I	RGATCY	3 cut(s)	127, 160, 175
BstYI	RGATCY	3 cut(s)	127, 160, 175
BtsCI	GGATG	2 cut(s)	248, 407
BtsIMutI	CAGTG	1 cut(s)	264
CaiI	CAGNNNCTG	1 cut(s)	395
Cfr13I	GGNCC	2 cut(s)	11, 208
CviAII	CATG	2 cut(s)	91, 370
DdeI	CTNAG	2 cut(s)	164, 278
DpnI	GATC	5 cut(s)	87, 129, 162, 177, 318
DpnII	GATC	5 cut(s)	85, 127, 160, 175, 316
DraI	TTTAAA	1 cut(s)	171
Eco130I	CCWWGG	4 cut(s)	120, 145, 192, 460
Eco47I	GGWCC	2 cut(s)	11, 208
EcoRI	GAATTC	1 cut(s)	282
EcoT14I	CCWWGG	4 cut(s)	120, 145, 192, 460
ErhI	CCWWGG	4 cut(s)	120, 145, 192, 460
FaeI	CATG	2 cut(s)	94, 373
FaiI	YATR	6 cut(s)	92, 248, 362, 371, 442, 444
FaqI	GGGAC	2 cut(s)	24, 65
FatI	CATG	2 cut(s)	90, 369
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	21, 396
FokI	GGATG	2 cut(s)	255, 394
Fsp4HI	GCNGC	2 cut(s)	21, 396
FspBI	CTAG	2 cut(s)	141, 466
GluI	GCNGC	2 cut(s)	21, 396
GsuI	CTGGAG	1 cut(s)	339
HapII	CCGG	1 cut(s)	211
Hin1II	CATG	2 cut(s)	94, 373
HinfI	GANTC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	211
Hpy188I	TCNGA	4 cut(s)	108, 165, 180, 321
Hpy188III	TCNNGA	2 cut(s)	9, 314
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	23, 31, 50
HpyF3I	CTNAG	2 cut(s)	164, 278
Hsp92II	CATG	2 cut(s)	94, 373
Ksp22I	TGATCA	1 cut(s)	85
Kzo9I	GATC	5 cut(s)	85, 127, 160, 175, 316
LmnI	GCTCC	2 cut(s)	80, 358
LpnPI	CCDG	6 cut(s)	69, 96, 144, 224, 363, 369
Lsp1109I	GCAGC	2 cut(s)	7, 382
LweI	GCATC	1 cut(s)	382
MaeI	CTAG	2 cut(s)	141, 466
MaeIII	GTNAC	2 cut(s)	385, 400
MalI	GATC	5 cut(s)	87, 129, 162, 177, 318
MboI	GATC	5 cut(s)	85, 127, 160, 175, 316
MboII	GAAGA	2 cut(s)	87, 278
MfeI	CAATTG	1 cut(s)	45
MflI	RGATCY	3 cut(s)	127, 160, 175
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	3 cut(s)	45, 217, 282
MnlI	CCTC	1 cut(s)	233
MseI	TTAA	1 cut(s)	170
MspA1I	CMGCKG	1 cut(s)	20
MspI	CCGG	1 cut(s)	211
MunI	CAATTG	1 cut(s)	45
NdeII	GATC	5 cut(s)	85, 127, 160, 175, 316
NlaIII	CATG	2 cut(s)	94, 373
NlaIV	GGNNCC	2 cut(s)	12, 76
NspI	RCATGY	1 cut(s)	94
PciI	ACATGT	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	104
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	22, 397
PscI	ACATGT	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	12, 76
PspPI	GGNCC	2 cut(s)	11, 208
PstNI	CAGNNNCTG	1 cut(s)	395
PsuI	RGATCY	3 cut(s)	127, 160, 175
PvuII	CAGCTG	1 cut(s)	20
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	2 cut(s)	21, 396
Sau3AI	GATC	5 cut(s)	85, 127, 160, 175, 316
Sau96I	GGNCC	2 cut(s)	11, 208
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	8 cut(s)	22, 113, 126, 151, 185, 253, 352, 429
SfaNI	GCATC	1 cut(s)	382
SinI	GGWCC	2 cut(s)	11, 208
Sse9I	AATT	3 cut(s)	45, 217, 282
SsiI	CCGC	2 cut(s)	37, 398
SspMI	CTAG	2 cut(s)	141, 466
StyI	CCWWGG	4 cut(s)	120, 145, 192, 460
TaqI	TCGA	1 cut(s)	215
TasI	AATT	3 cut(s)	45, 217, 282
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	264
TseI	GCWGC	2 cut(s)	20, 395
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	1 cut(s)	264
VpaK11BI	GGWCC	2 cut(s)	11, 208
XapI	RAATTY	1 cut(s)	282
XceI	RCATGY	1 cut(s)	94
XspI	CTAG	2 cut(s)	141, 466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.