Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0004257

Physical Location & Seq

Genomic Coordinates Forward (+)

16000716 .. 16001212

Gene Structure 497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG181400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGTTCAAAGATGCAAAGGAGTACGCAGAGAAGGACAATGAGTTGGTCCGGTTGAAGAGTGAAGCAAGGCTGAAAGGAGGATTCTATGTCAAGCCAGAGTCTAAGCTTTCGTTTATCATTCGTATCCATGGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAACTTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000463 GO:0000470 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015934 GO:0016070 GO:0016072 GO:0019538 GO:0022613 GO:0022625 GO:0022626 GO:0032991 GO:0034470 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

59

Amino Acids

6.83

Weight (kDa)

9.7

Isoelectric Point (pI)

27.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L30_N	PF08079	5 - 31	5.8e-06	Ribosomal L30 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004257)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404281 RchiOBHm_Chr4g0405601 RchiOBHm_Chr4g0416011 RchiOBHm_Chr6g0272841
rosa_multiflora	Rmu_sc0000272.1_g000010 Rmu_sc0000533.1_g000058 Rmu_sc0000683.1_g000005 Rmu_sc0002798.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005510 Rroxscaffold_1G00054810 Rroxscaffold_1G00055880 Rroxscaffold_2G00087770
rosa_rugosa	Rorug02G0232900 Rorug04G0335200
rosa_samantha	Rh1AG115100 Rh1AG115200 Rh1BG108300 Rh1CG111100 Rh1CG146400 Rh1DG119800 Rh1DG119900 Rh2AG175000 Rh2CG179500 Rh2DG181400 Rh4AG148900 Rh4AG161700 Rh4CG155600 Rh5CG070700 Rh5DG564800 Rh6DG180600 Rh7AG378500 Rh7BG442400
rosa_wichuraiana	Rw7G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	140
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	2 cut(s)	7, 55
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
AlwI	GGATC	1 cut(s)	140
AspS9I	GGNCC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	46
BciVI	GTATCC	1 cut(s)	134
BfuI	GTATCC	1 cut(s)	134
BglII	AGATCT	1 cut(s)	162
Bme18I	GGWCC	1 cut(s)	46
BmgT120I	GGNCC	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	145, 162
Bsp19I	CCATGG	1 cut(s)	127
BspPI	GGATC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	2 cut(s)	145, 162
BssT1I	CCWWGG	1 cut(s)	127
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	102
BstDSI	CCRYGG	1 cut(s)	127
BstKTI	GATC	2 cut(s)	148, 165
BstMBI	GATC	2 cut(s)	145, 162
BstX2I	RGATCY	1 cut(s)	162
BstYI	RGATCY	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	127
Cfr13I	GGNCC	1 cut(s)	46
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	3 cut(s)	70, 94, 106
CviKI_1	RGCY	3 cut(s)	70, 94, 106
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	2 cut(s)	147, 164
DpnII	GATC	2 cut(s)	145, 162
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	46
EcoT14I	CCWWGG	1 cut(s)	127
ErhI	CCWWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	131
FaiI	YATR	2 cut(s)	87, 129
FalI	AAGNNNNNCTT	1 cut(s)	149
FatI	CATG	1 cut(s)	127
HapII	CCGG	1 cut(s)	49
Hin1II	CATG	1 cut(s)	131
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	81, 98
HpaII	CCGG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	14, 169
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	131
Kzo9I	GATC	2 cut(s)	145, 162
LpnPI	CCDG	2 cut(s)	62, 108
MalI	GATC	2 cut(s)	147, 164
MboI	GATC	2 cut(s)	145, 162
MboII	GAAGA	2 cut(s)	67, 172
MflI	RGATCY	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	1 cut(s)	71
MspI	CCGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	127
NdeII	GATC	2 cut(s)	145, 162
NlaIII	CATG	1 cut(s)	131
PfeI	GAWTC	1 cut(s)	81
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspPI	GGNCC	1 cut(s)	46
PsuI	RGATCY	1 cut(s)	162
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	145, 162
Sau96I	GGNCC	1 cut(s)	46
SchI	GAGTC	1 cut(s)	107
SetI	ASST	1 cut(s)	108
SgeI	CNNG	5 cut(s)	61, 78, 103, 107, 140
SinI	GGWCC	1 cut(s)	46
StyI	CCWWGG	1 cut(s)	127
TfiI	GAWTC	1 cut(s)	81
VpaK11BI	GGWCC	1 cut(s)	46

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.