RchiOBHm_Chr4g0405601

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
26205079 .. 26206690
1612 bp
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UTR
Exon/CDS
Intron
PRQ37708

Sequence Viewer

Length: 162 bp
ATGATGAAGTTATTGGCTGACAGTTTGGATATCTTGTATCACATGTCTTCGTCCTTTCCGAGCTTTGTTGCGAAGGTGGTAACTTGGTATCTACTAGAGGTGTTAATGGTGGAAAAGAAGCCTCAGGTTCCTGCTCCTGTAGCAAAATCCAGTAGCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.95

Weight (kDa)

8.11

Isoelectric Point (pI)

55.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 42
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
AxyI CCTNAGG 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 39
BfaI CTAG 2 cut(s) 95, 160
BfmI CTRYAG 1 cut(s) 138
BmiI GGNNCC 1 cut(s) 129
BpiI GAAGAC 1 cut(s) 39
Bse1I ACTGG 1 cut(s) 150
Bse21I CCTNAGG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 137
BseNI ACTGG 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNSI RCATGY 1 cut(s) 46
BstSFI CTRYAG 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 123
CviAII CATG 1 cut(s) 43
CviJI RGCY 4 cut(s) 17, 63, 121, 156
CviKI_1 RGCY 4 cut(s) 17, 63, 121, 156
DdeI CTNAG 1 cut(s) 123
Eco32I GATATC 1 cut(s) 31
Eco81I CCTNAGG 1 cut(s) 123
EcoRV GATATC 1 cut(s) 31
FaeI CATG 1 cut(s) 46
FaiI YATR 1 cut(s) 44
FatI CATG 1 cut(s) 42
FspBI CTAG 2 cut(s) 95, 160
Hin1II CATG 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 60
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 23
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 1 cut(s) 123
Hsp92II CATG 1 cut(s) 46
LmnI GCTCC 1 cut(s) 139
LpnPI CCDG 3 cut(s) 110, 144, 150
MaeI CTAG 2 cut(s) 95, 160
MaeIII GTNAC 1 cut(s) 79
MboII GAAGA 1 cut(s) 39
MnlI CCTC 2 cut(s) 91, 132
MseI TTAA 1 cut(s) 104
MwoI GCNNNNNNNGC 1 cut(s) 140
NlaIII CATG 1 cut(s) 46
NlaIV GGNNCC 1 cut(s) 129
NspI RCATGY 1 cut(s) 46
PciI ACATGT 1 cut(s) 42
PcsI WCGNNNNNNNCGW 1 cut(s) 56
PscI ACATGT 1 cut(s) 42
PspN4I GGNNCC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 104
SetI ASST 4 cut(s) 65, 78, 102, 129
SfcI CTRYAG 1 cut(s) 138
SgeI CNNG 8 cut(s) 46, 55, 72, 96, 107, 137, 143, 149
SspMI CTAG 2 cut(s) 95, 160
TaaI ACNGT 1 cut(s) 23
Tru1I TTAA 1 cut(s) 104
Tru9I TTAA 1 cut(s) 104
TspDTI ATGAA 1 cut(s) 20
XceI RCATGY 1 cut(s) 46
XspI CTAG 2 cut(s) 95, 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.