Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0004257

Physical Location & Seq

Genomic Coordinates Forward (+)

22383186 .. 22393662

Gene Structure 10477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG111100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGAAAAATGCAGTGAAGGGCATGGGAGGGAATGACGCGAGTAAAATGCAGTCTTCCACGGTGGGAATGTCCAACAATGACAGCAATGGAGAATTTCATATGCCAAATAAGAAGGCTGAAAGAAGCGTAAGGGAAGATGTGAATGTGGGAGTTGGGTCGGAGCTGTCATGCAGCCCAATAGGAAAACACAGCATAGAAAGGCAGGAAAATATGAATACCGCAGACATAATCTGGAGTAGTTTGAAGCGAAGTCATCCGAGTGTGATGTATAGTGAATTTAGTGAATATGAGGCATGTGCAAGTATTTTAAAGGACAAAGTGGGGATGTCGCAGTCTGATAGTGGGGTAAATATTAGATATGGAGCTAGGCCCTATAGGCTAAAAGTAAAACTATCTGAGGCTGAACGTGAAGCAAGGTTGAAAGGAGGATTCTATGTCGAGCTAGAGTCGTCTAAGGTCTTGTTTATCATTCGTATCCACGGTATCAATGCCATTGATCCAAAGACAAAGAAGATCTTGCAGCTTTTGCGTTTGAGACAGGGTTTGGGCAAGCATGGCATTATCTGCACTGAGGATCTTATTCACGAGATCTTGACAGTTGGAAGGAGGCTAACAACTTCCTGTGGCCATTTAAGCTCAAGGCACCATTGGGTGGTCTTAAGAAGAAGAGGAACCGTTATGTTGAAGGTGGAGATGCTGGAAACCGTGAGAACTACTTCAACGAGCTTATTAGGAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

246

Amino Acids

27.43

Weight (kDa)

9.53

Isoelectric Point (pI)

57.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004257)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404281 RchiOBHm_Chr4g0405601 RchiOBHm_Chr4g0416011 RchiOBHm_Chr6g0272841
rosa_multiflora	Rmu_sc0000272.1_g000010 Rmu_sc0000533.1_g000058 Rmu_sc0000683.1_g000005 Rmu_sc0002798.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005510 Rroxscaffold_1G00054810 Rroxscaffold_1G00055880 Rroxscaffold_2G00087770
rosa_rugosa	Rorug02G0232900 Rorug04G0335200
rosa_samantha	Rh1AG115100 Rh1AG115200 Rh1BG108300 Rh1CG111100 Rh1CG146400 Rh1DG119800 Rh1DG119900 Rh2AG175000 Rh2CG179500 Rh2DG181400 Rh4AG148900 Rh4AG161700 Rh4CG155600 Rh5CG070700 Rh5DG564800 Rh6DG180600 Rh7AG378500 Rh7BG442400
rosa_wichuraiana	Rw7G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	642
AccB7I	CCANNNNNTGG	1 cut(s)	652
AccII	CGCG	1 cut(s)	38
AciI	CCGC	1 cut(s)	219
AclWI	GGATC	2 cut(s)	491, 582
AcoI	YGGCCR	1 cut(s)	625
AcsI	RAATTY	2 cut(s)	92, 275
AfiI	CCNNNNNNNGG	1 cut(s)	652
AflII	CTTAAG	1 cut(s)	658
AgsI	TTSAA	4 cut(s)	244, 421, 685, 720
AluBI	AGCT	6 cut(s)	163, 365, 442, 523, 636, 726
AluI	AGCT	6 cut(s)	163, 365, 442, 523, 636, 726
Alw26I	GTCTC	1 cut(s)	529
AlwI	GGATC	2 cut(s)	491, 582
AoxI	GGCC	2 cut(s)	368, 625
ApeKI	GCWGC	2 cut(s)	171, 520
ApoI	RAATTY	2 cut(s)	92, 275
Asp700I	GAANNNNTTC	1 cut(s)	715
AspS9I	GGNCC	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	627
BanI	GGYRCC	1 cut(s)	642
BauI	CACGAG	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	45
BbvI	GCAGC	2 cut(s)	183, 532
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciVI	GTATCC	1 cut(s)	485
BcoDI	GTCTC	1 cut(s)	529
BfaI	CTAG	2 cut(s)	366, 443
BfmI	CTRYAG	1 cut(s)	373
BfrI	CTTAAG	1 cut(s)	658
BfuI	GTATCC	1 cut(s)	485
BglI	GCCNNNNNGGC	1 cut(s)	376
BglII	AGATCT	2 cut(s)	513, 588
BisI	GCNGC	2 cut(s)	172, 521
BlsI	GCNGC	2 cut(s)	173, 522
BmgT120I	GGNCC	1 cut(s)	369
BmiI	GGNNCC	2 cut(s)	644, 673
BmsI	GCATC	1 cut(s)	684
BpiI	GAAGAC	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	253
BpuEI	CTTGAG	1 cut(s)	622
BsaJI	CCNNGG	2 cut(s)	57, 478
Bsc4I	CCNNNNNNNGG	1 cut(s)	652
Bse3DI	GCAATG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	57, 478
BseGI	GGATG	2 cut(s)	253, 330
BseLI	CCNNNNNNNGG	1 cut(s)	652
BseMI	GCAATG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	387, 561
BseXI	GCAGC	2 cut(s)	183, 532
BsgI	GTGCAG	1 cut(s)	550
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	370, 627
BshNI	GGYRCC	1 cut(s)	642
BslI	CCNNNNNNNGG	1 cut(s)	652
BsmAI	GTCTC	1 cut(s)	529
BsnI	GGCC	2 cut(s)	370, 627
Bsp143I	GATC	4 cut(s)	496, 513, 574, 588
BspACI	CCGC	1 cut(s)	219
BspANI	GGCC	2 cut(s)	370, 627
BspCNI	CTCAG	2 cut(s)	388, 562
BspFNI	CGCG	1 cut(s)	38
BspLI	GGNNCC	2 cut(s)	644, 673
BspPI	GGATC	2 cut(s)	491, 582
BspT107I	GGYRCC	1 cut(s)	642
BspTI	CTTAAG	1 cut(s)	658
BsrDI	GCAATG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	57, 478
BssMI	GATC	4 cut(s)	496, 513, 574, 588
BssSI	CACGAG	1 cut(s)	584
Bst2BI	CACGAG	1 cut(s)	584
Bst4CI	ACNGT	5 cut(s)	61, 482, 598, 676, 706
Bst6I	CTCTTC	1 cut(s)	661
BstAFI	CTTAAG	1 cut(s)	658
BstAPI	GCANNNNNTGC	2 cut(s)	526, 564
BstC8I	GCNNGC	1 cut(s)	551
BstDEI	CTNAG	3 cut(s)	396, 453, 570
BstDSI	CCRYGG	2 cut(s)	57, 478
BstF5I	GGATG	2 cut(s)	253, 330
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	4 cut(s)	499, 516, 577, 591
BstMAI	GTCTC	1 cut(s)	529
BstMBI	GATC	4 cut(s)	496, 513, 574, 588
BstMWI	GCNNNNNNNGC	5 cut(s)	376, 526, 555, 564, 633
BstNSI	RCATGY	1 cut(s)	297
BstSFI	CTRYAG	1 cut(s)	373
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	183, 532
BstV2I	GAAGAC	1 cut(s)	45
BstX2I	RGATCY	3 cut(s)	513, 574, 588
BstYI	RGATCY	3 cut(s)	513, 574, 588
BsuI	GTATCC	1 cut(s)	485
BsuRI	GGCC	2 cut(s)	370, 627
BtgI	CCRYGG	2 cut(s)	57, 478
BtsCI	GGATG	2 cut(s)	253, 330
BtsI	GCAGTG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	18, 567
Cac8I	GCNNGC	1 cut(s)	551
Cfr13I	GGNCC	1 cut(s)	369
CseI	GACGC	1 cut(s)	44
CviAII	CATG	4 cut(s)	22, 168, 294, 554
DdeI	CTNAG	3 cut(s)	396, 453, 570
DpnI	GATC	4 cut(s)	498, 515, 576, 590
DpnII	GATC	4 cut(s)	496, 513, 574, 588
DraI	TTTAAA	1 cut(s)	309
EaeI	YGGCCR	1 cut(s)	625
Eam1104I	CTCTTC	1 cut(s)	661
EarI	CTCTTC	1 cut(s)	661
EcoO109I	RGGNCCY	1 cut(s)	369
FaeI	CATG	4 cut(s)	25, 171, 297, 557
FalI	AAGNNNNNCTT	2 cut(s)	500, 532
FatI	CATG	4 cut(s)	21, 167, 293, 553
FauNDI	CATATG	1 cut(s)	99
Fnu4HI	GCNGC	2 cut(s)	172, 521
FokI	GGATG	2 cut(s)	240, 337
Fsp4HI	GCNGC	2 cut(s)	172, 521
FspBI	CTAG	2 cut(s)	366, 443
GluI	GCNGC	2 cut(s)	172, 521
GsuI	CTGGAG	1 cut(s)	253
HaeIII	GGCC	2 cut(s)	370, 627
HgaI	GACGC	1 cut(s)	44
Hin1II	CATG	4 cut(s)	25, 171, 297, 557
HinfI	GANTC	2 cut(s)	429, 446
Hpy188I	TCNGA	4 cut(s)	160, 258, 337, 397
Hpy188III	TCNNGA	3 cut(s)	232, 584, 592
HpyAV	CCTTC	4 cut(s)	10, 106, 597, 679
HpyCH4III	ACNGT	5 cut(s)	61, 482, 598, 676, 706
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	6 cut(s)	11, 49, 171, 299, 520, 567
HpyF10VI	GCNNNNNNNGC	5 cut(s)	376, 526, 555, 564, 633
HpyF3I	CTNAG	3 cut(s)	396, 453, 570
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	4 cut(s)	25, 171, 297, 557
Kzo9I	GATC	4 cut(s)	496, 513, 574, 588
LmnI	GCTCC	2 cut(s)	160, 362
LpnPI	CCDG	5 cut(s)	188, 217, 524, 634, 683
Lsp1109I	GCAGC	2 cut(s)	183, 532
LweI	GCATC	1 cut(s)	684
MaeI	CTAG	2 cut(s)	366, 443
MaeII	ACGT	1 cut(s)	406
MalI	GATC	4 cut(s)	498, 515, 576, 590
MboI	GATC	4 cut(s)	496, 513, 574, 588
MboII	GAAGA	5 cut(s)	45, 146, 523, 675, 678
MflI	RGATCY	3 cut(s)	513, 574, 588
MlsI	TGGCCA	1 cut(s)	627
MluCI	AATT	2 cut(s)	92, 275
MluNI	TGGCCA	1 cut(s)	627
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	3 cut(s)	96, 138, 580
MnlI	CCTC	7 cut(s)	20, 283, 391, 419, 565, 600, 662
Mox20I	TGGCCA	1 cut(s)	627
MroXI	GAANNNNTTC	1 cut(s)	715
MscI	TGGCCA	1 cut(s)	627
MseI	TTAA	3 cut(s)	308, 632, 659
MslI	CAYNNNNRTG	1 cut(s)	258
Msp20I	TGGCCA	1 cut(s)	627
MspCI	CTTAAG	1 cut(s)	658
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	5 cut(s)	376, 526, 555, 564, 633
NdeI	CATATG	1 cut(s)	99
NdeII	GATC	4 cut(s)	496, 513, 574, 588
NlaIII	CATG	4 cut(s)	25, 171, 297, 557
NlaIV	GGNNCC	2 cut(s)	644, 673
NspI	RCATGY	1 cut(s)	297
PdmI	GAANNNNTTC	1 cut(s)	715
PfeI	GAWTC	1 cut(s)	429
PflMI	CCANNNNNTGG	1 cut(s)	652
PkrI	GCNGC	2 cut(s)	173, 522
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspN4I	GGNNCC	2 cut(s)	644, 673
PspPI	GGNCC	1 cut(s)	369
PsuI	RGATCY	3 cut(s)	513, 574, 588
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	308, 632, 659
SatI	GCNGC	2 cut(s)	172, 521
Sau3AI	GATC	4 cut(s)	496, 513, 574, 588
Sau96I	GGNCC	1 cut(s)	369
SchI	GAGTC	1 cut(s)	455
SfaNI	GCATC	1 cut(s)	684
SfcI	CTRYAG	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	258
SmlI	CTYRAG	2 cut(s)	637, 658
SmoI	CTYRAG	2 cut(s)	637, 658
Sse9I	AATT	2 cut(s)	92, 275
SsiI	CCGC	1 cut(s)	219
SspI	AATATT	1 cut(s)	352
SspMI	CTAG	2 cut(s)	366, 443
TaaI	ACNGT	5 cut(s)	61, 482, 598, 676, 706
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	1 cut(s)	438
TasI	AATT	2 cut(s)	92, 275
TfiI	GAWTC	1 cut(s)	429
Tru1I	TTAA	3 cut(s)	308, 632, 659
Tru9I	TTAA	3 cut(s)	308, 632, 659
TscAI	CASTG	2 cut(s)	18, 574
TseI	GCWGC	2 cut(s)	171, 520
TspDTI	ATGAA	3 cut(s)	17, 86, 227
TspRI	CASTG	2 cut(s)	18, 574
Van91I	CCANNNNNTGG	1 cut(s)	652
Vha464I	CTTAAG	1 cut(s)	658
XapI	RAATTY	2 cut(s)	92, 275
XceI	RCATGY	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	715
XspI	CTAG	2 cut(s)	366, 443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.