Rh1AG115100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004257
Physical Location & Seq
Forward (+)
19768600 .. 19770785
2186 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG115100.1

Sequence Viewer

Length: 645 bp
ATGTGTAAGCAACAATTAGGGTTGGAAAGGACTAAGAAGGAGAAATTAGGGCTAATGAAAAATGCGGTGAAGGGCATGGGAGGGAATGACGCGAGTAAAATGCAGTCTTCCACGGTGGGAATGTACAACAATGACAGCAATGGAGAATTTCATATGCCAAATAAGAAGGCTGAAAGAAGCGTAAGGGAAGATGTGAATGTGGGAGTTGGGTCGGAGCTGTCATGCAGCCCAATAGGAAAACACAGCATAGAAAGGCAGGAAAATATGAATACCGCAGACATAATCAGGAGTAGTTTGAAGCGAAGTCATCCGAGTGTGATGTATAGTGAATTTAGTGAATATGAGGCATGTGCAAGTATTTTAAAGGACAAAGTGGGGATGTCGCAGTCTGATAGTGGGGTAAATATTAGATATGGAGCTAGGCCCTATAGGCTAAAAGTAAAACTATCTGAGGCTGAAGTAAGAAGTATAGACTCTGTGTATTTGGACGGGAAACATCTGACGGAAGAAGAAGGAAGATCTAAAAATTCGGAGCGTAAAAGATTCACGCAGTGGGTGGCACATACCAGGAGAGTTTGCGGTCTCCAAAGGTTTGATAGTAGGATCGACACTTGTGAGAGGTACGACCCGGAAGAACAGAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.29

Weight (kDa)

9.03

Isoelectric Point (pI)

64.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 92
AciI CCGC 3 cut(s) 65, 273, 579
AclWI GGATC 1 cut(s) 611
AcsI RAATTY 3 cut(s) 146, 329, 526
AcuI CTGAAG 1 cut(s) 477
AdeI CACNNNGTG 1 cut(s) 552
AfaI GTAC 2 cut(s) 125, 623
AgsI TTSAA 1 cut(s) 298
AjnI CCWGG 1 cut(s) 566
AluBI AGCT 2 cut(s) 217, 419
AluI AGCT 2 cut(s) 217, 419
Alw26I GTCTC 1 cut(s) 587
AlwI GGATC 1 cut(s) 611
AoxI GGCC 1 cut(s) 422
ApeKI GCWGC 1 cut(s) 225
ApoI RAATTY 3 cut(s) 146, 329, 526
AspS9I GGNCC 1 cut(s) 423
AsuC2I CCSGG 1 cut(s) 629
AsuHPI GGTGA 1 cut(s) 79
BbsI GAAGAC 1 cut(s) 99
BbvI GCAGC 1 cut(s) 237
BcgI CGANNNNNNTGC 2 cut(s) 82, 116
BciT130I CCWGG 1 cut(s) 568
BcnI CCSGG 1 cut(s) 629
BcoDI GTCTC 1 cut(s) 587
BfaI CTAG 1 cut(s) 420
BfmI CTRYAG 1 cut(s) 427
BglI GCCNNNNNGGC 1 cut(s) 430
BglII AGATCT 1 cut(s) 518
BisI GCNGC 1 cut(s) 226
BlsI GCNGC 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 568, 629
BmgT120I GGNCC 1 cut(s) 423
BmrFI CCNGG 2 cut(s) 568, 629
BpiI GAAGAC 1 cut(s) 99
BpuMI CCSGG 1 cut(s) 629
BsaI GGTCTC 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 111
Bse3DI GCAATG 1 cut(s) 145
BseBI CCWGG 1 cut(s) 568
BseDI CCNNGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 307, 384
BseMI GCAATG 1 cut(s) 145
BseMII CTCAG 1 cut(s) 441
BseXI GCAGC 1 cut(s) 237
Bsh1236I CGCG 1 cut(s) 92
BshFI GGCC 1 cut(s) 424
BsiSI CCGG 1 cut(s) 629
BsmAI GTCTC 1 cut(s) 587
BsnI GGCC 1 cut(s) 424
Bso31I GGTCTC 1 cut(s) 587
Bsp1407I TGTACA 1 cut(s) 123
Bsp143I GATC 2 cut(s) 518, 603
BspACI CCGC 3 cut(s) 65, 273, 579
BspANI GGCC 1 cut(s) 424
BspCNI CTCAG 1 cut(s) 442
BspFNI CGCG 1 cut(s) 92
BspPI GGATC 1 cut(s) 611
BspTNI GGTCTC 1 cut(s) 587
BsrDI GCAATG 1 cut(s) 145
BsrGI TGTACA 1 cut(s) 123
BssECI CCNNGG 1 cut(s) 111
BssMI GATC 2 cut(s) 518, 603
Bst2UI CCWGG 1 cut(s) 568
Bst4CI ACNGT 1 cut(s) 115
BstAUI TGTACA 1 cut(s) 123
BstDEI CTNAG 2 cut(s) 33, 450
BstDSI CCRYGG 1 cut(s) 111
BstF5I GGATG 2 cut(s) 307, 384
BstFNI CGCG 1 cut(s) 92
BstKTI GATC 2 cut(s) 521, 606
BstMAI GTCTC 1 cut(s) 587
BstMBI GATC 2 cut(s) 518, 603
BstMWI GCNNNNNNNGC 1 cut(s) 430
BstNI CCWGG 1 cut(s) 568
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 2 cut(s) 566, 627
BstSFI CTRYAG 1 cut(s) 427
BstUI CGCG 1 cut(s) 92
BstV1I GCAGC 1 cut(s) 237
BstV2I GAAGAC 1 cut(s) 99
BstX2I RGATCY 1 cut(s) 518
BstYI RGATCY 1 cut(s) 518
BsuRI GGCC 1 cut(s) 424
BtgI CCRYGG 1 cut(s) 111
BtsCI GGATG 2 cut(s) 307, 384
BtsI GCAGTG 1 cut(s) 557
BtsIMutI CAGTG 1 cut(s) 557
Cfr13I GGNCC 1 cut(s) 423
CseI GACGC 1 cut(s) 98
Csp6I GTAC 2 cut(s) 124, 622
CviAII CATG 3 cut(s) 76, 222, 348
CviJI RGCY 8 cut(s) 52, 170, 217, 228, 419, 424, 433, 455
CviKI_1 RGCY 8 cut(s) 52, 170, 217, 228, 419, 424, 433, 455
CviQI GTAC 2 cut(s) 124, 622
DdeI CTNAG 2 cut(s) 33, 450
DpnI GATC 2 cut(s) 520, 605
DpnII GATC 2 cut(s) 518, 603
DraI TTTAAA 1 cut(s) 363
DraIII CACNNNGTG 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 587
Eco57I CTGAAG 1 cut(s) 477
EcoO109I RGGNCCY 1 cut(s) 423
EcoRII CCWGG 1 cut(s) 566
FaeI CATG 3 cut(s) 79, 225, 351
FatI CATG 3 cut(s) 75, 221, 347
FauNDI CATATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 226
FokI GGATG 2 cut(s) 294, 391
Fsp4HI GCNGC 1 cut(s) 226
FspBI CTAG 1 cut(s) 420
GluI GCNGC 1 cut(s) 226
HaeIII GGCC 1 cut(s) 424
HapII CCGG 1 cut(s) 629
HgaI GACGC 1 cut(s) 98
Hin1II CATG 3 cut(s) 79, 225, 351
HinfI GANTC 2 cut(s) 473, 543
HpaII CCGG 1 cut(s) 629
HphI GGTGA 1 cut(s) 79
Hpy188I TCNGA 6 cut(s) 214, 312, 391, 451, 501, 532
Hpy188III TCNNGA 1 cut(s) 286
HpyAV CCTTC 4 cut(s) 31, 64, 160, 506
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 3 cut(s) 103, 225, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 430
HpyF3I CTNAG 2 cut(s) 33, 450
Hsp92II CATG 3 cut(s) 79, 225, 351
Kzo9I GATC 2 cut(s) 518, 603
LmnI GCTCC 3 cut(s) 214, 416, 532
LpnPI CCDG 4 cut(s) 242, 271, 553, 580
Lsp1109I GCAGC 1 cut(s) 237
MaeI CTAG 1 cut(s) 420
MalI GATC 2 cut(s) 520, 605
MboI GATC 2 cut(s) 518, 603
MboII GAAGA 6 cut(s) 99, 200, 518, 521, 528, 644
MflI RGATCY 1 cut(s) 518
MluCI AATT 5 cut(s) 14, 44, 146, 329, 526
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 192
MnlI CCTC 4 cut(s) 74, 337, 445, 612
MseI TTAA 1 cut(s) 362
MslI CAYNNNNRTG 1 cut(s) 312
MspI CCGG 1 cut(s) 629
MspR9I CCNGG 2 cut(s) 568, 629
MvaI CCWGG 1 cut(s) 568
MvnI CGCG 1 cut(s) 92
MwoI GCNNNNNNNGC 1 cut(s) 430
NciI CCSGG 1 cut(s) 629
NdeI CATATG 1 cut(s) 153
NdeII GATC 2 cut(s) 518, 603
NlaIII CATG 3 cut(s) 79, 225, 351
NspI RCATGY 1 cut(s) 351
PfeI GAWTC 1 cut(s) 543
PkrI GCNGC 1 cut(s) 227
PleI GAGTC 1 cut(s) 467
PpsI GAGTC 1 cut(s) 467
Psp6I CCWGG 1 cut(s) 566
PspGI CCWGG 1 cut(s) 566
PspPI GGNCC 1 cut(s) 423
PsuI RGATCY 1 cut(s) 518
RsaI GTAC 2 cut(s) 125, 623
RsaNI GTAC 2 cut(s) 124, 622
RseI CAYNNNNRTG 1 cut(s) 312
SaqAI TTAA 1 cut(s) 362
SatI GCNGC 1 cut(s) 226
Sau3AI GATC 2 cut(s) 518, 603
Sau96I GGNCC 1 cut(s) 423
SchI GAGTC 1 cut(s) 467
ScrFI CCNGG 2 cut(s) 568, 629
SetI ASST 4 cut(s) 219, 421, 593, 623
SfcI CTRYAG 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 312
Sse9I AATT 5 cut(s) 14, 44, 146, 329, 526
SsiI CCGC 3 cut(s) 65, 273, 579
SspI AATATT 1 cut(s) 406
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 2 cut(s) 566, 627
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 1 cut(s) 606
TasI AATT 5 cut(s) 14, 44, 146, 329, 526
TatI WGTACW 1 cut(s) 123
TfiI GAWTC 1 cut(s) 543
Tru1I TTAA 1 cut(s) 362
Tru9I TTAA 1 cut(s) 362
TscAI CASTG 1 cut(s) 557
TseI GCWGC 1 cut(s) 225
TspDTI ATGAA 3 cut(s) 71, 140, 281
TspGWI ACGGA 1 cut(s) 518
TspRI CASTG 1 cut(s) 557
XapI RAATTY 3 cut(s) 146, 329, 526
XceI RCATGY 1 cut(s) 351
XspI CTAG 1 cut(s) 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.