60S ribosomal Protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0404281 RchiOBHm_Chr4g0405601 RchiOBHm_Chr4g0416011 RchiOBHm_Chr6g0272841 |
| rosa_multiflora | Rmu_sc0000272.1_g000010 Rmu_sc0000533.1_g000058 Rmu_sc0000683.1_g000005 Rmu_sc0002798.1_g000004 |
| rosa_roxburghii | Rroxscaffold_1G00005510 Rroxscaffold_1G00054810 Rroxscaffold_1G00055880 Rroxscaffold_2G00087770 |
| rosa_rugosa | Rorug02G0232900 Rorug04G0335200 |
| rosa_samantha | Rh1AG115100 Rh1AG115200 Rh1BG108300 Rh1CG111100 Rh1CG146400 Rh1DG119800 Rh1DG119900 Rh2AG175000 Rh2CG179500 Rh2DG181400 Rh4AG148900 Rh4AG161700 Rh4CG155600 Rh5CG070700 Rh5DG564800 Rh6DG180600 Rh7AG378500 Rh7BG442400 |
| rosa_wichuraiana | Rw7G037910 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 1 cut(s) | 140 |
| AgsI | TTSAA | 3 cut(s) | 187, 205, 224 |
| AluBI | AGCT | 2 cut(s) | 21, 153 |
| AluI | AGCT | 2 cut(s) | 21, 153 |
| AlwI | GGATC | 1 cut(s) | 140 |
| ApeKI | GCWGC | 1 cut(s) | 98 |
| AspS9I | GGNCC | 1 cut(s) | 178 |
| AvaII | GGWCC | 1 cut(s) | 178 |
| AxyI | CCTNAGG | 1 cut(s) | 81 |
| BbvI | GCAGC | 1 cut(s) | 110 |
| BfaI | CTAG | 1 cut(s) | 53 |
| BfmI | CTRYAG | 1 cut(s) | 96 |
| BglII | AGATCT | 1 cut(s) | 130 |
| BisI | GCNGC | 1 cut(s) | 99 |
| BlsI | GCNGC | 1 cut(s) | 100 |
| Bme18I | GGWCC | 1 cut(s) | 178 |
| BmgT120I | GGNCC | 1 cut(s) | 178 |
| BmiI | GGNNCC | 1 cut(s) | 87 |
| BsaJI | CCNNGG | 3 cut(s) | 30, 115, 162 |
| BsaWI | WCCGGW | 1 cut(s) | 180 |
| Bse1I | ACTGG | 1 cut(s) | 108 |
| Bse21I | CCTNAGG | 1 cut(s) | 81 |
| Bse3DI | GCAATG | 1 cut(s) | 204 |
| BseDI | CCNNGG | 3 cut(s) | 30, 115, 162 |
| BseMI | GCAATG | 1 cut(s) | 204 |
| BseMII | CTCAG | 2 cut(s) | 95, 125 |
| BseNI | ACTGG | 1 cut(s) | 108 |
| BseXI | GCAGC | 1 cut(s) | 110 |
| BsiSI | CCGG | 1 cut(s) | 181 |
| Bsp143I | GATC | 2 cut(s) | 130, 145 |
| BspCNI | CTCAG | 2 cut(s) | 94, 126 |
| BspLI | GGNNCC | 1 cut(s) | 87 |
| BspMAI | CTGCAG | 1 cut(s) | 100 |
| BspPI | GGATC | 1 cut(s) | 140 |
| BsrDI | GCAATG | 1 cut(s) | 204 |
| BsrI | ACTGG | 1 cut(s) | 108 |
| BssECI | CCNNGG | 3 cut(s) | 30, 115, 162 |
| BssMI | GATC | 2 cut(s) | 130, 145 |
| BssT1I | CCWWGG | 3 cut(s) | 30, 115, 162 |
| BstDEI | CTNAG | 2 cut(s) | 81, 134 |
| BstKTI | GATC | 2 cut(s) | 133, 148 |
| BstMBI | GATC | 2 cut(s) | 130, 145 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 98 |
| BstSFI | CTRYAG | 1 cut(s) | 96 |
| BstV1I | GCAGC | 1 cut(s) | 110 |
| BstX2I | RGATCY | 2 cut(s) | 130, 145 |
| BstYI | RGATCY | 2 cut(s) | 130, 145 |
| Bsu36I | CCTNAGG | 1 cut(s) | 81 |
| Cfr13I | GGNCC | 1 cut(s) | 178 |
| CviJI | RGCY | 4 cut(s) | 21, 79, 114, 153 |
| CviKI_1 | RGCY | 4 cut(s) | 21, 79, 114, 153 |
| DdeI | CTNAG | 2 cut(s) | 81, 134 |
| DpnI | GATC | 2 cut(s) | 132, 147 |
| DpnII | GATC | 2 cut(s) | 130, 145 |
| DraI | TTTAAA | 1 cut(s) | 141 |
| Eco130I | CCWWGG | 3 cut(s) | 30, 115, 162 |
| Eco47I | GGWCC | 1 cut(s) | 178 |
| Eco81I | CCTNAGG | 1 cut(s) | 81 |
| EcoT14I | CCWWGG | 3 cut(s) | 30, 115, 162 |
| ErhI | CCWWGG | 3 cut(s) | 30, 115, 162 |
| FaiI | YATR | 3 cut(s) | 217, 219, 234 |
| Fnu4HI | GCNGC | 1 cut(s) | 99 |
| Fsp4HI | GCNGC | 1 cut(s) | 99 |
| FspBI | CTAG | 1 cut(s) | 53 |
| GluI | GCNGC | 1 cut(s) | 99 |
| HapII | CCGG | 1 cut(s) | 181 |
| HpaII | CCGG | 1 cut(s) | 181 |
| Hpy188I | TCNGA | 3 cut(s) | 18, 135, 150 |
| HpyCH4V | TGCA | 1 cut(s) | 98 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 98 |
| HpyF3I | CTNAG | 2 cut(s) | 81, 134 |
| Kzo9I | GATC | 2 cut(s) | 130, 145 |
| LmnI | GCTCC | 1 cut(s) | 97 |
| LpnPI | CCDG | 6 cut(s) | 68, 102, 108, 121, 194, 240 |
| Lsp1109I | GCAGC | 1 cut(s) | 110 |
| MaeI | CTAG | 1 cut(s) | 53 |
| MaeIII | GTNAC | 1 cut(s) | 37 |
| MalI | GATC | 2 cut(s) | 132, 147 |
| MboI | GATC | 2 cut(s) | 130, 145 |
| MflI | RGATCY | 2 cut(s) | 130, 145 |
| MnlI | CCTC | 3 cut(s) | 49, 90, 203 |
| MseI | TTAA | 2 cut(s) | 62, 140 |
| MspI | CCGG | 1 cut(s) | 181 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 98 |
| NdeII | GATC | 2 cut(s) | 130, 145 |
| NlaIV | GGNNCC | 1 cut(s) | 87 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 14 |
| PkrI | GCNGC | 1 cut(s) | 100 |
| PspN4I | GGNNCC | 1 cut(s) | 87 |
| PspPI | GGNCC | 1 cut(s) | 178 |
| PstI | CTGCAG | 1 cut(s) | 100 |
| PsuI | RGATCY | 2 cut(s) | 130, 145 |
| SaqAI | TTAA | 2 cut(s) | 62, 140 |
| SatI | GCNGC | 1 cut(s) | 99 |
| Sau3AI | GATC | 2 cut(s) | 130, 145 |
| Sau96I | GGNCC | 1 cut(s) | 178 |
| SetI | ASST | 6 cut(s) | 23, 36, 60, 87, 121, 155 |
| SfcI | CTRYAG | 1 cut(s) | 96 |
| SinI | GGWCC | 1 cut(s) | 178 |
| SspMI | CTAG | 1 cut(s) | 53 |
| StyI | CCWWGG | 3 cut(s) | 30, 115, 162 |
| Tru1I | TTAA | 2 cut(s) | 62, 140 |
| Tru9I | TTAA | 2 cut(s) | 62, 140 |
| TseI | GCWGC | 1 cut(s) | 98 |
| VpaK11BI | GGWCC | 1 cut(s) | 178 |
| XspI | CTAG | 1 cut(s) | 53 |