Rh6DG180600

Ribosomal protein L7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0004257
Physical Location & Seq
Reverse (-)
31890209 .. 31932164
41956 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG180600.1

Sequence Viewer

Length: 420 bp
ATGTTTCCCTCCAGAAAACTCGAAGTTGTGGCGAGGGTGTCTCTTTTCAAAGACATATTCAAGGTGGTAACTTGGTATCTGCTAGAGGTGTTAATGGTGGAAAAGAAGCCTCCTGTTCCTGCTCCTGCAGCAAAATCCAGTAGCCAAGGTAATAGAAAAGATCTGATTCGGTTGAAGGGTGAAGCAAGGCTAGAAGGAGGATCATATGTTGAACCAGAGTATAAACTCTTGTTTATCGTTCGTCTCAGTGAATTGAGTTCTATGGGGATTTTGATGGGAGCTTCCACCAAAGCTTGGAGTTGGATAAAGATCTCTCTGTTGCTTTGCTTGGACCTTGCTCTCAGAGCAATTAATGATCCCTTTGTTTTGAATCGATGGGCAGATAAACTTGAAGCCAAAGATTCGGATAAAAAGGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_L30 Ribosomal_L30_N

Protein Analysis

139

Amino Acids

15.72

Weight (kDa)

9.61

Isoelectric Point (pI)

28.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 294
AclWI GGATC 2 cut(s) 208, 350
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 6 cut(s) 49, 61, 175, 212, 370, 392
AluBI AGCT 2 cut(s) 281, 293
AluI AGCT 2 cut(s) 281, 293
Alw26I GTCTC 2 cut(s) 45, 248
AlwI GGATC 2 cut(s) 208, 350
ApeKI GCWGC 1 cut(s) 128
AseI ATTAAT 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 191
AvaII GGWCC 1 cut(s) 331
BbvI GCAGC 1 cut(s) 140
BccI CCATC 2 cut(s) 268, 369
BcoDI GTCTC 2 cut(s) 45, 248
BfaI CTAG 2 cut(s) 83, 191
BfmI CTRYAG 1 cut(s) 126
BglII AGATCT 2 cut(s) 160, 309
BisI GCNGC 1 cut(s) 129
BlsI GCNGC 1 cut(s) 130
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 1 cut(s) 331
BplI GAGNNNNNCTC 2 cut(s) 25, 57
Bsa29I ATCGAT 1 cut(s) 373
BsaBI GATNNNNATC 1 cut(s) 308
BsaJI CCNNGG 1 cut(s) 145
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 308
BseCI ATCGAT 1 cut(s) 373
BseDI CCNNGG 1 cut(s) 145
BseJI GATNNNNATC 1 cut(s) 308
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 259, 355
BseNI ACTGG 1 cut(s) 138
BseXI GCAGC 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 373
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 45, 248
BsmBI CGTCTC 1 cut(s) 248
Bsp143I GATC 4 cut(s) 160, 200, 309, 355
BspCNI CTCAG 2 cut(s) 258, 354
BspDI ATCGAT 1 cut(s) 373
BspMAI CTGCAG 1 cut(s) 130
BspPI GGATC 2 cut(s) 208, 350
BsrI ACTGG 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 145
BssMI GATC 4 cut(s) 160, 200, 309, 355
BssT1I CCWWGG 1 cut(s) 145
BstDEI CTNAG 2 cut(s) 245, 341
BstKTI GATC 4 cut(s) 163, 203, 312, 358
BstMAI GTCTC 2 cut(s) 45, 248
BstMBI GATC 4 cut(s) 160, 200, 309, 355
BstMWI GCNNNNNNNGC 2 cut(s) 128, 344
BstSFI CTRYAG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 140
BstX2I RGATCY 2 cut(s) 160, 309
BstYI RGATCY 2 cut(s) 160, 309
Bsu15I ATCGAT 1 cut(s) 373
BsuTUI ATCGAT 1 cut(s) 373
BtsIMutI CAGTG 1 cut(s) 253
Cfr13I GGNCC 1 cut(s) 331
ClaI ATCGAT 1 cut(s) 373
CviJI RGCY 6 cut(s) 109, 144, 190, 281, 293, 395
CviKI_1 RGCY 6 cut(s) 109, 144, 190, 281, 293, 395
DdeI CTNAG 2 cut(s) 245, 341
DpnI GATC 4 cut(s) 162, 202, 311, 357
DpnII GATC 4 cut(s) 160, 200, 309, 355
Eco130I CCWWGG 1 cut(s) 145
Eco47I GGWCC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 145
ErhI CCWWGG 1 cut(s) 145
Esp3I CGTCTC 1 cut(s) 248
FaiI YATR 5 cut(s) 56, 205, 207, 222, 263
FauNDI CATATG 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 129
FspBI CTAG 2 cut(s) 83, 191
GluI GCNGC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 3 cut(s) 166, 370, 401
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 3 cut(s) 165, 344, 406
Hpy188III TCNNGA 1 cut(s) 12
HpyAV CCTTC 2 cut(s) 169, 188
HpyCH4V TGCA 1 cut(s) 128
HpyF10VI GCNNNNNNNGC 2 cut(s) 128, 344
HpyF3I CTNAG 2 cut(s) 245, 341
Kzo9I GATC 4 cut(s) 160, 200, 309, 355
LmnI GCTCC 2 cut(s) 127, 278
LpnPI CCDG 6 cut(s) 25, 126, 132, 138, 151, 228
Lsp1109I GCAGC 1 cut(s) 140
MaeI CTAG 2 cut(s) 83, 191
MaeIII GTNAC 1 cut(s) 67
MalI GATC 4 cut(s) 162, 202, 311, 357
MboI GATC 4 cut(s) 160, 200, 309, 355
MflI RGATCY 2 cut(s) 160, 309
MluCI AATT 2 cut(s) 251, 348
MmeI TCCRAC 1 cut(s) 281
MnlI CCTC 5 cut(s) 19, 27, 79, 120, 191
MseI TTAA 2 cut(s) 92, 351
MwoI GCNNNNNNNGC 2 cut(s) 128, 344
NdeI CATATG 1 cut(s) 205
NdeII GATC 4 cut(s) 160, 200, 309, 355
PfeI GAWTC 3 cut(s) 166, 370, 401
PflMI CCANNNNNTGG 1 cut(s) 294
PkrI GCNGC 1 cut(s) 130
PshBI ATTAAT 1 cut(s) 351
PspPI GGNCC 1 cut(s) 331
PstI CTGCAG 1 cut(s) 130
PsuI RGATCY 2 cut(s) 160, 309
SaqAI TTAA 2 cut(s) 92, 351
SatI GCNGC 1 cut(s) 129
Sau3AI GATC 4 cut(s) 160, 200, 309, 355
Sau96I GGNCC 1 cut(s) 331
SetI ASST 7 cut(s) 66, 90, 151, 283, 295, 336, 417
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 331
Sse9I AATT 2 cut(s) 251, 348
SspMI CTAG 2 cut(s) 83, 191
StyI CCWWGG 1 cut(s) 145
TaqI TCGA 2 cut(s) 21, 373
TasI AATT 2 cut(s) 251, 348
TfiI GAWTC 3 cut(s) 166, 370, 401
Tru1I TTAA 2 cut(s) 92, 351
Tru9I TTAA 2 cut(s) 92, 351
TscAI CASTG 1 cut(s) 253
TseI GCWGC 1 cut(s) 128
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 331
VspI ATTAAT 1 cut(s) 351
XspI CTAG 2 cut(s) 83, 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.