Rroxscaffold_2G00087770

MOSC domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004257
Physical Location & Seq
Forward (+)
9831702 .. 9833779
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00087770.1

Sequence Viewer

Length: 468 bp
ATGGAGGACACGATGCCCATTCACAAGACCGATACTCTAACTCCGTCAAGGTACTGGTTCCGGGAGTCTGTTCTAAAGAAGAGGAAGAGAGAGGATGGGCCTTGGCAAAGAAGCAGAGGCTGGAAGCCACCAGGAAGAAGAATGCCGAGAATAGGAAGCTTATTTACAACAAATCCAAATAGTACACCAAGGAGTACGCAGAGAAGTACAGGATTTCGATGGGTTCGACAATGGTTAGTTATAAACCAAAAAAGGAGAGCATATACTCAAAGAGTTGAACCAAAGCTTGCTTGTGTTAAGGTACAGCTACCAAATGAGGCATTCCAAGAGGGTTGGGAACCTACTAGCAGCTCTTATCGTGGTAAAAGCATTAATCTTTGTTCATTCTACAAAACTTCCACAAGACACTCGGACTATGCTTTCTGCAGCAGAAAAAAAGTTAATATTAAACGGAGATGTTGTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MOSC MOSC_N

Protein Analysis

155

Amino Acids

18.45

Weight (kDa)

10.71

Isoelectric Point (pI)

67.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MOSC_N PF03476 61 - 104 9.4e-06 MOSC N-terminal beta barrel domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AfaI GTAC 5 cut(s) 53, 184, 196, 208, 303
AfiI CCNNNNNNNGG 1 cut(s) 152
AgsI TTSAA 1 cut(s) 278
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 4 cut(s) 159, 286, 307, 351
AluI AGCT 4 cut(s) 159, 286, 307, 351
AlwNI CAGNNNCTG 1 cut(s) 120
AoxI GGCC 1 cut(s) 98
ApeKI GCWGC 2 cut(s) 348, 426
AseI ATTAAT 1 cut(s) 372
AspS9I GGNCC 1 cut(s) 98
AsuC2I CCSGG 1 cut(s) 62
BarI GAAGNNNNNNTAC 2 cut(s) 148, 180
BbvI GCAGC 2 cut(s) 360, 438
BccI CCATC 2 cut(s) 89, 213
BciT130I CCWGG 1 cut(s) 132
BcnI CCSGG 1 cut(s) 62
BfaI CTAG 1 cut(s) 345
BfmI CTRYAG 1 cut(s) 424
BisI GCNGC 2 cut(s) 349, 427
BlsI GCNGC 2 cut(s) 350, 428
Bme1390I CCNGG 2 cut(s) 62, 132
BmgT120I GGNCC 1 cut(s) 98
BmiI GGNNCC 2 cut(s) 59, 339
BmrFI CCNGG 2 cut(s) 62, 132
BmsI GCATC 1 cut(s) 3
BpuMI CCSGG 1 cut(s) 62
BsaJI CCNNGG 2 cut(s) 101, 188
BsaXI ACNNNNNCTCC 3 cut(s) 25, 55, 445
Bsc4I CCNNNNNNNGG 1 cut(s) 152
Bse1I ACTGG 1 cut(s) 59
BseBI CCWGG 1 cut(s) 132
BseDI CCNNGG 2 cut(s) 101, 188
BseGI GGATG 1 cut(s) 100
BseLI CCNNNNNNNGG 1 cut(s) 152
BseNI ACTGG 1 cut(s) 59
BseXI GCAGC 2 cut(s) 360, 438
BshFI GGCC 1 cut(s) 100
BsiSI CCGG 1 cut(s) 61
BslI CCNNNNNNNGG 1 cut(s) 152
BsmI GAATGC 2 cut(s) 147, 320
BsnI GGCC 1 cut(s) 100
BspANI GGCC 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 59, 339
BspMAI CTGCAG 1 cut(s) 428
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 2 cut(s) 101, 188
BssT1I CCWWGG 2 cut(s) 101, 188
Bst2UI CCWGG 1 cut(s) 132
Bst6I CTCTTC 2 cut(s) 74, 80
BstC8I GCNNGC 1 cut(s) 288
BstF5I GGATG 1 cut(s) 100
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 2 cut(s) 60, 130
BstSFI CTRYAG 1 cut(s) 424
BstV1I GCAGC 2 cut(s) 360, 438
BsuRI GGCC 1 cut(s) 100
BtsCI GGATG 1 cut(s) 100
Cac8I GCNNGC 1 cut(s) 288
CaiI CAGNNNCTG 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 98
Csp6I GTAC 5 cut(s) 52, 183, 195, 207, 302
CviJI RGCY 7 cut(s) 100, 120, 127, 159, 286, 307, 351
CviKI_1 RGCY 7 cut(s) 100, 120, 127, 159, 286, 307, 351
CviQI GTAC 5 cut(s) 52, 183, 195, 207, 302
Eam1104I CTCTTC 2 cut(s) 74, 80
EarI CTCTTC 2 cut(s) 74, 80
Eco130I CCWWGG 2 cut(s) 101, 188
EcoRII CCWGG 1 cut(s) 130
EcoT14I CCWWGG 2 cut(s) 101, 188
ErhI CCWWGG 2 cut(s) 101, 188
FaiI YATR 4 cut(s) 242, 262, 264, 417
Fnu4HI GCNGC 2 cut(s) 349, 427
FokI GGATG 1 cut(s) 107
Fsp4HI GCNGC 2 cut(s) 349, 427
FspBI CTAG 1 cut(s) 345
GluI GCNGC 2 cut(s) 349, 427
HaeIII GGCC 1 cut(s) 100
HapII CCGG 1 cut(s) 61
HindIII AAGCTT 2 cut(s) 157, 284
HinfI GANTC 1 cut(s) 65
HpaII CCGG 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 412
Hpy8I GTNNAC 1 cut(s) 185
HpyCH4V TGCA 1 cut(s) 426
LpnPI CCDG 6 cut(s) 40, 74, 106, 117, 144, 195
Lsp1109I GCAGC 2 cut(s) 360, 438
LweI GCATC 1 cut(s) 3
MaeI CTAG 1 cut(s) 345
MboII GAAGA 4 cut(s) 91, 97, 147, 150
MlyI GAGTC 1 cut(s) 74
MnlI CCTC 5 cut(s) 75, 85, 110, 310, 322
MseI TTAA 4 cut(s) 297, 372, 441, 447
MspI CCGG 1 cut(s) 61
MspR9I CCNGG 2 cut(s) 62, 132
Mva1269I GAATGC 2 cut(s) 147, 320
MvaI CCWGG 1 cut(s) 132
NciI CCSGG 1 cut(s) 62
NlaIV GGNNCC 2 cut(s) 59, 339
NmeAIII GCCGAG 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 223
PctI GAATGC 2 cut(s) 147, 320
PfoI TCCNGGA 1 cut(s) 60
PkrI GCNGC 2 cut(s) 350, 428
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PshBI ATTAAT 1 cut(s) 372
PsiI TTATAA 1 cut(s) 242
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 2 cut(s) 59, 339
PspPI GGNCC 1 cut(s) 98
PstI CTGCAG 1 cut(s) 428
PstNI CAGNNNCTG 1 cut(s) 120
RsaI GTAC 5 cut(s) 53, 184, 196, 208, 303
RsaNI GTAC 5 cut(s) 52, 183, 195, 207, 302
SaqAI TTAA 4 cut(s) 297, 372, 441, 447
SatI GCNGC 2 cut(s) 349, 427
Sau96I GGNCC 1 cut(s) 98
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 2 cut(s) 62, 132
SetI ASST 7 cut(s) 53, 161, 288, 303, 309, 343, 353
SfaNI GCATC 1 cut(s) 3
SfcI CTRYAG 1 cut(s) 424
SspI AATATT 1 cut(s) 445
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 2 cut(s) 60, 130
StyI CCWWGG 2 cut(s) 101, 188
TaqI TCGA 2 cut(s) 217, 226
TaqII GACCGA 1 cut(s) 44
TatI WGTACW 2 cut(s) 182, 206
Tru1I TTAA 4 cut(s) 297, 372, 441, 447
Tru9I TTAA 4 cut(s) 297, 372, 441, 447
TseI GCWGC 2 cut(s) 348, 426
TspDTI ATGAA 1 cut(s) 372
TspGWI ACGGA 2 cut(s) 33, 466
VspI ATTAAT 1 cut(s) 372
XspI CTAG 1 cut(s) 345
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.