Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0004257

Physical Location & Seq

Genomic Coordinates Reverse (-)

41052559 .. 41053803

Gene Structure 1245 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG161700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 552 bp

ATGTCATGTAGCCCAACAGGAAAATACAGCATGGAAAGGCAGGAAAATGTGAAAACCGCAGATATAATCCGACAAGGTTCGAAGCGAAGTCATGCGAGTGCAATGTATAGTGCATTACATGAATATGAGGAGTATGCAAGTATTTTAAAGGGCAAAGTGGGAATGTCACAGTGCAGCAGTGGGGTAAATATACGATATGGAGCAGGGCCCTATAGGCTGAAACTCACACTTTATGAGGCTGAAGCAAGAATAATAGACTCAGTTTTTTTGGGCGGGAAACAGCTCTCGGAAGAAGAAGAAAGTCAAGATATAAAAGTGCGGAGGGTAAAAGATTCACGCAGTGGGTGGCTCATACCAGGAGGGTCTGCGGGCTCCAAATATTTGATGGTAGGATCGACACTAGTGAAAGGGTTAGTGTCAAGAGTTAAAACGAATGTAAATCATATAAACTGTCATAAAAGCATGATTGGAGAAATAAAGGTTATTATGGATTATTTTTTTTGGTGCAAATGGATTGGGTATGAAAATGCAGATATTCTTACCTGTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

183

Amino Acids

20.42

Weight (kDa)

9.03

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004257)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0404281 RchiOBHm_Chr4g0405601 RchiOBHm_Chr4g0416011 RchiOBHm_Chr6g0272841
rosa_multiflora	Rmu_sc0000272.1_g000010 Rmu_sc0000533.1_g000058 Rmu_sc0000683.1_g000005 Rmu_sc0002798.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005510 Rroxscaffold_1G00054810 Rroxscaffold_1G00055880 Rroxscaffold_2G00087770
rosa_rugosa	Rorug02G0232900 Rorug04G0335200
rosa_samantha	Rh1AG115100 Rh1AG115200 Rh1BG108300 Rh1CG111100 Rh1CG146400 Rh1DG119800 Rh1DG119900 Rh2AG175000 Rh2CG179500 Rh2DG181400 Rh4AG148900 Rh4AG161700 Rh4CG155600 Rh5CG070700 Rh5DG564800 Rh6DG180600 Rh7AG378500 Rh7BG442400
rosa_wichuraiana	Rw7G037910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	57, 273, 319, 368
AclWI	GGATC	1 cut(s)	400
AcuI	CTGAAG	1 cut(s)	261
AdeI	CACNNNGTG	1 cut(s)	341
AhlI	ACTAGT	1 cut(s)	400
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	1 cut(s)	283
AluI	AGCT	1 cut(s)	283
AlwI	GGATC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	206
ApaI	GGGCCC	1 cut(s)	210
ApeKI	GCWGC	1 cut(s)	174
AspS9I	GGNCC	2 cut(s)	206, 207
AsuII	TTCGAA	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	210
BanII	GRGCYC	2 cut(s)	210, 374
BbvI	GCAGC	1 cut(s)	186
BccI	CCATC	1 cut(s)	379
BciT130I	CCWGG	1 cut(s)	357
BcuI	ACTAGT	1 cut(s)	400
BfaI	CTAG	1 cut(s)	401
BfmI	CTRYAG	1 cut(s)	211
BglI	GCCNNNNNGGC	1 cut(s)	214
BisI	GCNGC	1 cut(s)	175
BlsI	GCNGC	1 cut(s)	176
Bme1390I	CCNGG	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	206, 207
BmiI	GGNNCC	2 cut(s)	208, 373
BmrFI	CCNGG	1 cut(s)	357
Bpu14I	TTCGAA	1 cut(s)	80
Bse3DI	GCAATG	1 cut(s)	108
BseBI	CCWGG	1 cut(s)	357
BseMI	GCAATG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	273
BseRI	GAGGAG	1 cut(s)	143
BseSI	GKGCMC	1 cut(s)	210
BseXI	GCAGC	1 cut(s)	186
BsgI	GTGCAG	1 cut(s)	193
BshFI	GGCC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	208
Bsp119I	TTCGAA	1 cut(s)	80
Bsp120I	GGGCCC	1 cut(s)	206
Bsp1286I	GDGCHC	2 cut(s)	210, 374
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	4 cut(s)	57, 273, 319, 368
BspANI	GGCC	1 cut(s)	208
BspCNI	CTCAG	1 cut(s)	272
BspLI	GGNNCC	2 cut(s)	208, 373
BspPI	GGATC	1 cut(s)	400
BspT104I	TTCGAA	1 cut(s)	80
BsrDI	GCAATG	1 cut(s)	108
BssMI	GATC	1 cut(s)	392
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	171, 452
BstBI	TTCGAA	1 cut(s)	80
BstC8I	GCNNGC	1 cut(s)	370
BstDEI	CTNAG	1 cut(s)	259
BstKTI	GATC	1 cut(s)	395
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	211
BstSLI	GKGCMC	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	208
BtsI	GCAGTG	2 cut(s)	184, 346
BtsIMutI	CAGTG	3 cut(s)	176, 184, 346
Cac8I	GCNNGC	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	206, 207
CviAII	CATG	6 cut(s)	6, 31, 92, 119, 463, 549
CviJI	RGCY	7 cut(s)	12, 208, 217, 239, 283, 349, 372
CviKI_1	RGCY	7 cut(s)	12, 208, 217, 239, 283, 349, 372
DdeI	CTNAG	1 cut(s)	259
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
DraI	TTTAAA	1 cut(s)	147
DraIII	CACNNNGTG	1 cut(s)	341
Eco24I	GRGCYC	2 cut(s)	210, 374
Eco57I	CTGAAG	1 cut(s)	261
EcoO109I	RGGNCCY	2 cut(s)	206, 207
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	2 cut(s)	210, 374
FaeI	CATG	6 cut(s)	9, 34, 95, 122, 466, 552
FatI	CATG	6 cut(s)	5, 30, 91, 118, 462, 548
FauI	CCCGC	2 cut(s)	266, 361
Fnu4HI	GCNGC	1 cut(s)	175
FriOI	GRGCYC	2 cut(s)	210, 374
Fsp4HI	GCNGC	1 cut(s)	175
FspBI	CTAG	1 cut(s)	401
GluI	GCNGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	208
Hin1II	CATG	6 cut(s)	9, 34, 95, 122, 466, 552
HinfI	GANTC	2 cut(s)	257, 332
Hpy188I	TCNGA	2 cut(s)	71, 289
Hpy188III	TCNNGA	2 cut(s)	305, 420
HpyCH4III	ACNGT	2 cut(s)	171, 452
HpyCH4V	TGCA	7 cut(s)	101, 113, 137, 174, 507, 530, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	259
Hsp92II	CATG	6 cut(s)	9, 34, 95, 122, 466, 552
Kzo9I	GATC	1 cut(s)	392
LmnI	GCTCC	2 cut(s)	200, 377
LpnPI	CCDG	5 cut(s)	3, 26, 189, 342, 369
Lsp1109I	GCAGC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	3 cut(s)	302, 305, 308
MhlI	GDGCHC	2 cut(s)	210, 374
MlyI	GAGTC	1 cut(s)	251
MmeI	TCCRAC	1 cut(s)	94
MnlI	CCTC	4 cut(s)	121, 229, 315, 353
MseI	TTAA	2 cut(s)	146, 426
MslI	CAYNNNNRTG	2 cut(s)	96, 123
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	6 cut(s)	9, 34, 95, 122, 466, 552
NlaIV	GGNNCC	2 cut(s)	208, 373
NmuCI	GTSAC	1 cut(s)	165
NspV	TTCGAA	1 cut(s)	80
PfeI	GAWTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	176
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	208, 373
PspOMI	GGGCCC	1 cut(s)	206
PspPI	GGNCC	2 cut(s)	206, 207
RseI	CAYNNNNRTG	2 cut(s)	96, 123
SaqAI	TTAA	2 cut(s)	146, 426
SatI	GCNGC	1 cut(s)	175
Sau3AI	GATC	1 cut(s)	392
Sau96I	GGNCC	2 cut(s)	206, 207
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	2 cut(s)	210, 374
SetI	ASST	4 cut(s)	79, 285, 483, 545
SfcI	CTRYAG	1 cut(s)	211
SfuI	TTCGAA	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	96, 123
SpeI	ACTAGT	1 cut(s)	400
SsiI	CCGC	4 cut(s)	57, 273, 319, 368
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	1 cut(s)	401
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	171, 452
TaqI	TCGA	2 cut(s)	80, 395
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	2 cut(s)	146, 426
Tru9I	TTAA	2 cut(s)	146, 426
TscAI	CASTG	3 cut(s)	176, 184, 346
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	1 cut(s)	174
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	2 cut(s)	135, 537
TspRI	CASTG	3 cut(s)	176, 184, 346
XcmI	CCANNNNNNNNNTGG	1 cut(s)	382
XspI	CTAG	1 cut(s)	401

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.