CCR4-NOT transcription complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701 |
| rosa_multiflora | Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00233470 Rroxscaffold_3G00234220 |
| rosa_samantha | Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900 |
| rosa_wichuraiana | Rw3G022420 Rw4G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 51, 137 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 61 |
| AflIII | ACRYGT | 1 cut(s) | 8 |
| AjnI | CCWGG | 1 cut(s) | 60 |
| AluBI | AGCT | 2 cut(s) | 46, 217 |
| AluI | AGCT | 2 cut(s) | 46, 217 |
| ApeKI | GCWGC | 2 cut(s) | 200, 217 |
| AsuHPI | GGTGA | 1 cut(s) | 305 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 100, 132 |
| BbvI | GCAGC | 2 cut(s) | 187, 204 |
| BccI | CCATC | 1 cut(s) | 137 |
| BciT130I | CCWGG | 1 cut(s) | 62 |
| BciVI | GTATCC | 1 cut(s) | 23 |
| BfmI | CTRYAG | 1 cut(s) | 225 |
| BfuI | GTATCC | 1 cut(s) | 23 |
| BisI | GCNGC | 3 cut(s) | 138, 201, 218 |
| BlsI | GCNGC | 3 cut(s) | 139, 202, 219 |
| Bme1390I | CCNGG | 1 cut(s) | 62 |
| BmrFI | CCNGG | 1 cut(s) | 62 |
| BmsI | GCATC | 1 cut(s) | 229 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 206, 238 |
| BpmI | CTGGAG | 1 cut(s) | 308 |
| Bpu10I | CCTNAGC | 1 cut(s) | 213 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseBI | CCWGG | 1 cut(s) | 62 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BseMII | CTCAG | 2 cut(s) | 94, 204 |
| BseXI | GCAGC | 2 cut(s) | 187, 204 |
| BseYI | CCCAGC | 1 cut(s) | 153 |
| BsgI | GTGCAG | 1 cut(s) | 203 |
| BslFI | GGGAC | 1 cut(s) | 57 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 61 |
| BsmFI | GGGAC | 1 cut(s) | 57 |
| BspACI | CCGC | 2 cut(s) | 51, 137 |
| BspCNI | CTCAG | 2 cut(s) | 93, 205 |
| BspHI | TCATGA | 1 cut(s) | 267 |
| Bst2UI | CCWGG | 1 cut(s) | 62 |
| BstDEI | CTNAG | 2 cut(s) | 80, 213 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 206 |
| BstNI | CCWGG | 1 cut(s) | 62 |
| BstNSI | RCATGY | 1 cut(s) | 12 |
| BstSCI | CCNGG | 1 cut(s) | 60 |
| BstSFI | CTRYAG | 1 cut(s) | 225 |
| BstV1I | GCAGC | 2 cut(s) | 187, 204 |
| BsuI | GTATCC | 1 cut(s) | 23 |
| CciI | TCATGA | 1 cut(s) | 267 |
| CsiI | ACCWGGT | 1 cut(s) | 60 |
| CviAII | CATG | 3 cut(s) | 9, 128, 268 |
| CviJI | RGCY | 4 cut(s) | 46, 140, 217, 303 |
| CviKI_1 | RGCY | 4 cut(s) | 46, 140, 217, 303 |
| DdeI | CTNAG | 2 cut(s) | 80, 213 |
| EciI | GGCGGA | 1 cut(s) | 40 |
| EcoRII | CCWGG | 1 cut(s) | 60 |
| FaeI | CATG | 3 cut(s) | 12, 131, 271 |
| FaiI | YATR | 7 cut(s) | 10, 28, 95, 104, 129, 159, 269 |
| FaqI | GGGAC | 1 cut(s) | 57 |
| FatI | CATG | 3 cut(s) | 8, 127, 267 |
| Fnu4HI | GCNGC | 3 cut(s) | 138, 201, 218 |
| Fsp4HI | GCNGC | 3 cut(s) | 138, 201, 218 |
| GluI | GCNGC | 3 cut(s) | 138, 201, 218 |
| GsaI | CCCAGC | 1 cut(s) | 157 |
| GsuI | CTGGAG | 1 cut(s) | 308 |
| Hin1II | CATG | 3 cut(s) | 12, 131, 271 |
| HincII | GTYRAC | 1 cut(s) | 253 |
| HindII | GTYRAC | 1 cut(s) | 253 |
| HinfI | GANTC | 3 cut(s) | 173, 230, 283 |
| HphI | GGTGA | 1 cut(s) | 305 |
| Hpy166II | GTNNAC | 1 cut(s) | 253 |
| Hpy188I | TCNGA | 2 cut(s) | 166, 238 |
| Hpy188III | TCNNGA | 2 cut(s) | 268, 287 |
| Hpy8I | GTNNAC | 1 cut(s) | 253 |
| HpyAV | CCTTC | 2 cut(s) | 204, 320 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 220 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 206 |
| HpyF3I | CTNAG | 2 cut(s) | 80, 213 |
| Hsp92II | CATG | 3 cut(s) | 12, 131, 271 |
| LpnPI | CCDG | 6 cut(s) | 47, 53, 74, 167, 225, 272 |
| Lsp1109I | GCAGC | 2 cut(s) | 187, 204 |
| LweI | GCATC | 1 cut(s) | 229 |
| MabI | ACCWGGT | 1 cut(s) | 60 |
| MlyI | GAGTC | 1 cut(s) | 239 |
| MnlI | CCTC | 2 cut(s) | 196, 306 |
| MspR9I | CCNGG | 1 cut(s) | 62 |
| MvaI | CCWGG | 1 cut(s) | 62 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 206 |
| NlaIII | CATG | 3 cut(s) | 12, 131, 271 |
| NspI | RCATGY | 1 cut(s) | 12 |
| PagI | TCATGA | 1 cut(s) | 267 |
| PciI | ACATGT | 1 cut(s) | 8 |
| PfeI | GAWTC | 2 cut(s) | 173, 283 |
| PkrI | GCNGC | 3 cut(s) | 139, 202, 219 |
| PleI | GAGTC | 1 cut(s) | 238 |
| PpsI | GAGTC | 1 cut(s) | 238 |
| PscI | ACATGT | 1 cut(s) | 8 |
| Psp6I | CCWGG | 1 cut(s) | 60 |
| PspFI | CCCAGC | 1 cut(s) | 153 |
| PspGI | CCWGG | 1 cut(s) | 60 |
| SatI | GCNGC | 3 cut(s) | 138, 201, 218 |
| SchI | GAGTC | 1 cut(s) | 239 |
| ScrFI | CCNGG | 1 cut(s) | 62 |
| SetI | ASST | 7 cut(s) | 24, 48, 63, 219, 252, 312, 318 |
| SexAI | ACCWGGT | 1 cut(s) | 60 |
| SfaNI | GCATC | 1 cut(s) | 229 |
| SfcI | CTRYAG | 1 cut(s) | 225 |
| SsiI | CCGC | 2 cut(s) | 51, 137 |
| StyD4I | CCNGG | 1 cut(s) | 60 |
| TauI | GCSGC | 1 cut(s) | 140 |
| TfiI | GAWTC | 2 cut(s) | 173, 283 |
| TseI | GCWGC | 2 cut(s) | 200, 217 |
| TspDTI | ATGAA | 3 cut(s) | 108, 116, 256 |
| XceI | RCATGY | 1 cut(s) | 12 |