Rh7DG372900

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0003483
Physical Location & Seq
Forward (+)
50489542 .. 50498808
9267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG372900.1

Sequence Viewer

Length: 645 bp
ATGGAATCCAATTCTGCCCTCCATCTTAGTGCTTCATCTATTCATGTTGGGGCGGCTGATGGTGTTTCCCAGCATAGTTCTGAAAATGATTCTGTTGTTGCCTCATTTCCTTCTGCTGTTTCTGCCCCTGAGCTGCACTCTGTAGAGTCAGCTGATGCTGTAAAGGAATCTGGAGTGTCCTCACAGCCACCACCTTCACCTGCTATTGTTGCACAGAAGTTGGAAGCTCTGGTGATTAATGATGCTAGAGAATCAGAAATCCAGGGAGTCATTGGTGAAGTGCCTGATATTATACTCAGATGTGTTAGTCGAGATGAGGCTGCCTTGGCTGTGGCTCAAAAGGTTTTCAAGGGTTTGTACGAGAATGCAACAAACCAGATTCATGTTGGCGCACATCTAGCAATGCTGACTGCGATTCGTGATGTTTGCAAGCTTGTCTTTACGCAGCTCACTAGTTGGGTATGCACTATTACACTGGCAGATATTGTTTACGCAGTCCGGCCCTCCCCTTTGAATCAAGGGACTCGATCAGATACATATTTCGATATGGACATTGCCAAAACCATGGATTCAACTCCTGACCTGAGTGCAGTGTGCATCCATCAGAGGACATGGAAGCCCATCATTCAGAAGCACGCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

214

Amino Acids

22.87

Weight (kDa)

5.4

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_Cnot1 PF25097 79 - 158 2.7e-15 Cnot1 ARM repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 208
Acc36I ACCTGC 1 cut(s) 208
AciI CCGC 1 cut(s) 53
AfaI GTAC 1 cut(s) 359
AgsI TTSAA 3 cut(s) 349, 514, 573
AhlI ACTAGT 1 cut(s) 452
AjnI CCWGG 1 cut(s) 261
AluBI AGCT 5 cut(s) 133, 152, 227, 433, 448
AluI AGCT 5 cut(s) 133, 152, 227, 433, 448
AoxI GGCC 1 cut(s) 500
ApeKI GCWGC 3 cut(s) 133, 320, 445
AseI ATTAAT 1 cut(s) 237
AspLEI GCGC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 501
AsuHPI GGTGA 3 cut(s) 189, 244, 287
BbvI GCAGC 3 cut(s) 120, 307, 457
BccI CCATC 4 cut(s) 30, 53, 609, 629
BciT130I CCWGG 1 cut(s) 263
BcuI ACTAGT 1 cut(s) 452
BfaI CTAG 3 cut(s) 246, 398, 453
BfmI CTRYAG 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 208
BisI GCNGC 4 cut(s) 54, 134, 321, 446
BlsI GCNGC 4 cut(s) 55, 135, 322, 447
Bme1390I CCNGG 1 cut(s) 263
BmgT120I GGNCC 1 cut(s) 501
BmrFI CCNGG 1 cut(s) 263
BmsI GCATC 3 cut(s) 145, 232, 606
BplI GAGNNNNNCTC 2 cut(s) 122, 154
BpmI CTGGAG 1 cut(s) 192
Bpu10I CCTNAGC 1 cut(s) 129
BsaJI CCNNGG 3 cut(s) 262, 324, 564
Bse1I ACTGG 1 cut(s) 480
Bse3DI GCAATG 2 cut(s) 408, 552
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 3 cut(s) 262, 324, 564
BseGI GGATG 1 cut(s) 597
BseMI GCAATG 2 cut(s) 408, 552
BseMII CTCAG 3 cut(s) 120, 310, 575
BseNI ACTGG 1 cut(s) 480
BseXI GCAGC 3 cut(s) 120, 307, 457
BseYI CCCAGC 1 cut(s) 69
BsgI GTGCAG 2 cut(s) 119, 609
BshFI GGCC 1 cut(s) 502
BsiSI CCGG 1 cut(s) 499
BslFI GGGAC 1 cut(s) 535
BsmFI GGGAC 1 cut(s) 535
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 502
Bsp143I GATC 1 cut(s) 527
Bsp19I CCATGG 1 cut(s) 564
BspACI CCGC 1 cut(s) 53
BspANI GGCC 1 cut(s) 502
BspCNI CTCAG 3 cut(s) 121, 309, 576
BspMI ACCTGC 1 cut(s) 208
BsrDI GCAATG 2 cut(s) 408, 552
BsrI ACTGG 1 cut(s) 480
BssECI CCNNGG 3 cut(s) 262, 324, 564
BssMI GATC 1 cut(s) 527
BssT1I CCWWGG 2 cut(s) 324, 564
Bst2UI CCWGG 1 cut(s) 263
BstC8I GCNNGC 2 cut(s) 431, 636
BstDEI CTNAG 4 cut(s) 26, 129, 296, 584
BstDSI CCRYGG 1 cut(s) 564
BstF5I GGATG 1 cut(s) 597
BstHHI GCGC 1 cut(s) 392
BstKTI GATC 1 cut(s) 530
BstMBI GATC 1 cut(s) 527
BstMWI GCNNNNNNNGC 4 cut(s) 122, 209, 326, 398
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 3 cut(s) 120, 307, 457
BstXI CCANNNNNNTGG 1 cut(s) 565
BsuRI GGCC 1 cut(s) 502
BtgI CCRYGG 1 cut(s) 564
BtsCI GGATG 1 cut(s) 597
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 2 cut(s) 473, 597
BveI ACCTGC 1 cut(s) 208
Cac8I GCNNGC 2 cut(s) 431, 636
CfoI GCGC 1 cut(s) 392
Cfr13I GGNCC 1 cut(s) 501
Csp6I GTAC 1 cut(s) 358
CviAII CATG 4 cut(s) 44, 383, 565, 612
CviQI GTAC 1 cut(s) 358
DdeI CTNAG 4 cut(s) 26, 129, 296, 584
DpnI GATC 1 cut(s) 529
DpnII GATC 1 cut(s) 527
Eco130I CCWWGG 2 cut(s) 324, 564
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 2 cut(s) 324, 564
ErhI CCWWGG 2 cut(s) 324, 564
FaeI CATG 4 cut(s) 47, 386, 568, 615
FaiI YATR 9 cut(s) 45, 75, 293, 384, 463, 538, 548, 566, 613
FalI AAGNNNNNCTT 2 cut(s) 422, 454
FaqI GGGAC 1 cut(s) 535
FatI CATG 4 cut(s) 43, 382, 564, 611
Fnu4HI GCNGC 4 cut(s) 54, 134, 321, 446
FokI GGATG 1 cut(s) 584
Fsp4HI GCNGC 4 cut(s) 54, 134, 321, 446
FspBI CTAG 3 cut(s) 246, 398, 453
GlaI GCGC 1 cut(s) 391
GluI GCNGC 4 cut(s) 54, 134, 321, 446
GsaI CCCAGC 1 cut(s) 73
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 1 cut(s) 502
HapII CCGG 1 cut(s) 499
HhaI GCGC 1 cut(s) 392
Hin1II CATG 4 cut(s) 47, 386, 568, 615
Hin6I GCGC 1 cut(s) 390
HinP1I GCGC 1 cut(s) 390
HindIII AAGCTT 1 cut(s) 431
HpaII CCGG 1 cut(s) 499
HphI GGTGA 3 cut(s) 189, 244, 287
Hpy166II GTNNAC 1 cut(s) 490
Hpy188I TCNGA 6 cut(s) 82, 256, 299, 532, 606, 630
Hpy188III TCNNGA 4 cut(s) 171, 311, 419, 578
Hpy8I GTNNAC 1 cut(s) 490
HpyAV CCTTC 2 cut(s) 120, 204
HpyCH4V TGCA 7 cut(s) 136, 212, 368, 429, 465, 590, 597
HpyF10VI GCNNNNNNNGC 4 cut(s) 122, 209, 326, 398
HpyF3I CTNAG 4 cut(s) 26, 129, 296, 584
Hsp92II CATG 4 cut(s) 47, 386, 568, 615
HspAI GCGC 1 cut(s) 390
Kzo9I GATC 1 cut(s) 527
Lsp1109I GCAGC 3 cut(s) 120, 307, 457
LweI GCATC 3 cut(s) 145, 232, 606
MaeI CTAG 3 cut(s) 246, 398, 453
MalI GATC 1 cut(s) 529
MboI GATC 1 cut(s) 527
MluCI AATT 1 cut(s) 10
MlyI GAGTC 3 cut(s) 155, 276, 517
MmeI TCCRAC 1 cut(s) 201
MnlI CCTC 6 cut(s) 29, 112, 190, 310, 514, 600
MseI TTAA 1 cut(s) 237
MslI CAYNNNNRTG 1 cut(s) 27
MspA1I CMGCKG 1 cut(s) 152
MspI CCGG 1 cut(s) 499
MspR9I CCNGG 1 cut(s) 263
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 4 cut(s) 122, 209, 326, 398
NcoI CCATGG 1 cut(s) 564
NdeII GATC 1 cut(s) 527
NlaIII CATG 4 cut(s) 47, 386, 568, 615
PaqCI CACCTGC 1 cut(s) 208
PctI GAATGC 1 cut(s) 370
PfeI GAWTC 8 cut(s) 5, 89, 167, 251, 379, 415, 514, 569
PkrI GCNGC 4 cut(s) 55, 135, 322, 447
PleI GAGTC 3 cut(s) 154, 275, 517
PpsI GAGTC 3 cut(s) 154, 275, 517
PshBI ATTAAT 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 261
PspFI CCCAGC 1 cut(s) 69
PspGI CCWGG 1 cut(s) 261
PspPI GGNCC 1 cut(s) 501
PvuII CAGCTG 1 cut(s) 152
RsaI GTAC 1 cut(s) 359
RsaNI GTAC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 1 cut(s) 237
SatI GCNGC 4 cut(s) 54, 134, 321, 446
Sau3AI GATC 1 cut(s) 527
Sau96I GGNCC 1 cut(s) 501
SchI GAGTC 3 cut(s) 155, 276, 517
ScrFI CCNGG 1 cut(s) 263
SetI ASST 9 cut(s) 135, 154, 196, 202, 229, 345, 435, 450, 585
SfaNI GCATC 3 cut(s) 145, 232, 606
SfcI CTRYAG 1 cut(s) 141
SmiMI CAYNNNNRTG 1 cut(s) 27
SpeI ACTAGT 1 cut(s) 452
Sse9I AATT 1 cut(s) 10
SsiI CCGC 1 cut(s) 53
SspMI CTAG 3 cut(s) 246, 398, 453
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 2 cut(s) 324, 564
TaqI TCGA 3 cut(s) 310, 526, 543
TasI AATT 1 cut(s) 10
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 8 cut(s) 5, 89, 167, 251, 379, 415, 514, 569
Tru1I TTAA 1 cut(s) 237
Tru9I TTAA 1 cut(s) 237
TscAI CASTG 2 cut(s) 480, 597
TseI GCWGC 3 cut(s) 133, 320, 445
TspDTI ATGAA 3 cut(s) 24, 32, 371
TspRI CASTG 2 cut(s) 480, 597
VspI ATTAAT 1 cut(s) 237
XcmI CCANNNNNNNNNTGG 2 cut(s) 269, 383
XspI CTAG 3 cut(s) 246, 398, 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.