CCR4-NOT transcription complex subunit
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701 |
| rosa_multiflora | Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00233470 Rroxscaffold_3G00234220 |
| rosa_samantha | Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900 |
| rosa_wichuraiana | Rw3G022420 Rw4G018200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfaI | GTAC | 1 cut(s) | 146 |
| AgsI | TTSAA | 2 cut(s) | 55, 136 |
| AhlI | ACTAGT | 1 cut(s) | 239 |
| AjnI | CCWGG | 1 cut(s) | 126 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 35, 67 |
| AluBI | AGCT | 3 cut(s) | 92, 220, 235 |
| AluI | AGCT | 3 cut(s) | 92, 220, 235 |
| AoxI | GGCC | 1 cut(s) | 78 |
| ApeKI | GCWGC | 1 cut(s) | 232 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 21, 53 |
| AspLEI | GCGC | 1 cut(s) | 179 |
| AspS9I | GGNCC | 1 cut(s) | 79 |
| AsuHPI | GGTGA | 1 cut(s) | 109 |
| BbvI | GCAGC | 1 cut(s) | 244 |
| BciT130I | CCWGG | 1 cut(s) | 128 |
| BcuI | ACTAGT | 1 cut(s) | 239 |
| BfaI | CTAG | 3 cut(s) | 111, 185, 240 |
| BisI | GCNGC | 1 cut(s) | 233 |
| BlsI | GCNGC | 1 cut(s) | 234 |
| Bme1390I | CCNGG | 1 cut(s) | 128 |
| BmgT120I | GGNCC | 1 cut(s) | 79 |
| BmrFI | CCNGG | 1 cut(s) | 128 |
| BmrI | ACTGGG | 1 cut(s) | 76 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BmuI | ACTGGG | 1 cut(s) | 76 |
| Bse1I | ACTGG | 1 cut(s) | 82 |
| Bse3DI | GCAATG | 1 cut(s) | 195 |
| BseBI | CCWGG | 1 cut(s) | 128 |
| BseGI | GGATG | 1 cut(s) | 49 |
| BseMI | GCAATG | 1 cut(s) | 195 |
| BseNI | ACTGG | 1 cut(s) | 82 |
| BseXI | GCAGC | 1 cut(s) | 244 |
| BshFI | GGCC | 1 cut(s) | 80 |
| BsmI | GAATGC | 1 cut(s) | 157 |
| BsnI | GGCC | 1 cut(s) | 80 |
| BspANI | GGCC | 1 cut(s) | 80 |
| BsrDI | GCAATG | 1 cut(s) | 195 |
| BsrI | ACTGG | 1 cut(s) | 82 |
| Bst2UI | CCWGG | 1 cut(s) | 128 |
| BstC8I | GCNNGC | 1 cut(s) | 218 |
| BstF5I | GGATG | 1 cut(s) | 49 |
| BstHHI | GCGC | 1 cut(s) | 179 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 185 |
| BstNI | CCWGG | 1 cut(s) | 128 |
| BstSCI | CCNGG | 1 cut(s) | 126 |
| BstV1I | GCAGC | 1 cut(s) | 244 |
| BsuRI | GGCC | 1 cut(s) | 80 |
| BtsCI | GGATG | 1 cut(s) | 49 |
| Cac8I | GCNNGC | 1 cut(s) | 218 |
| CfoI | GCGC | 1 cut(s) | 179 |
| Cfr13I | GGNCC | 1 cut(s) | 79 |
| Csp6I | GTAC | 1 cut(s) | 145 |
| CviAII | CATG | 1 cut(s) | 170 |
| CviJI | RGCY | 4 cut(s) | 80, 92, 220, 235 |
| CviKI_1 | RGCY | 4 cut(s) | 80, 92, 220, 235 |
| CviQI | GTAC | 1 cut(s) | 145 |
| EcoRII | CCWGG | 1 cut(s) | 126 |
| FaeI | CATG | 1 cut(s) | 173 |
| FaiI | YATR | 1 cut(s) | 171 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 209, 241 |
| FatI | CATG | 1 cut(s) | 169 |
| Fnu4HI | GCNGC | 1 cut(s) | 233 |
| FokI | GGATG | 1 cut(s) | 56 |
| Fsp4HI | GCNGC | 1 cut(s) | 233 |
| FspBI | CTAG | 3 cut(s) | 111, 185, 240 |
| GlaI | GCGC | 1 cut(s) | 178 |
| GluI | GCNGC | 1 cut(s) | 233 |
| HaeIII | GGCC | 1 cut(s) | 80 |
| HhaI | GCGC | 1 cut(s) | 179 |
| Hin1II | CATG | 1 cut(s) | 173 |
| Hin6I | GCGC | 1 cut(s) | 177 |
| HinP1I | GCGC | 1 cut(s) | 177 |
| HindIII | AAGCTT | 1 cut(s) | 218 |
| HinfI | GANTC | 3 cut(s) | 116, 166, 202 |
| HphI | GGTGA | 1 cut(s) | 109 |
| Hpy188I | TCNGA | 1 cut(s) | 121 |
| Hpy188III | TCNNGA | 1 cut(s) | 206 |
| HpyAV | CCTTC | 1 cut(s) | 241 |
| HpyCH4V | TGCA | 2 cut(s) | 155, 216 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 185 |
| Hsp92II | CATG | 1 cut(s) | 173 |
| HspAI | GCGC | 1 cut(s) | 177 |
| LpnPI | CCDG | 5 cut(s) | 80, 95, 113, 140, 176 |
| Lsp1109I | GCAGC | 1 cut(s) | 244 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeI | CTAG | 3 cut(s) | 111, 185, 240 |
| MaeIII | GTNAC | 1 cut(s) | 97 |
| MluCI | AATT | 1 cut(s) | 30 |
| MmeI | TCCRAC | 2 cut(s) | 66, 224 |
| MseI | TTAA | 1 cut(s) | 74 |
| MspR9I | CCNGG | 1 cut(s) | 128 |
| Mva1269I | GAATGC | 1 cut(s) | 157 |
| MvaI | CCWGG | 1 cut(s) | 128 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 185 |
| NlaIII | CATG | 1 cut(s) | 173 |
| NmuCI | GTSAC | 1 cut(s) | 97 |
| PctI | GAATGC | 1 cut(s) | 157 |
| PfeI | GAWTC | 3 cut(s) | 116, 166, 202 |
| PkrI | GCNGC | 1 cut(s) | 234 |
| Psp6I | CCWGG | 1 cut(s) | 126 |
| PspGI | CCWGG | 1 cut(s) | 126 |
| PspPI | GGNCC | 1 cut(s) | 79 |
| RsaI | GTAC | 1 cut(s) | 146 |
| RsaNI | GTAC | 1 cut(s) | 145 |
| SaqAI | TTAA | 1 cut(s) | 74 |
| SatI | GCNGC | 1 cut(s) | 233 |
| Sau96I | GGNCC | 1 cut(s) | 79 |
| ScrFI | CCNGG | 1 cut(s) | 128 |
| SetI | ASST | 5 cut(s) | 94, 132, 222, 237, 252 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| SpeI | ACTAGT | 1 cut(s) | 239 |
| Sse9I | AATT | 1 cut(s) | 30 |
| SspMI | CTAG | 3 cut(s) | 111, 185, 240 |
| StyD4I | CCNGG | 1 cut(s) | 126 |
| TaqI | TCGA | 1 cut(s) | 27 |
| TasI | AATT | 1 cut(s) | 30 |
| TfiI | GAWTC | 3 cut(s) | 116, 166, 202 |
| Tru1I | TTAA | 1 cut(s) | 74 |
| Tru9I | TTAA | 1 cut(s) | 74 |
| TseFI | GTSAC | 1 cut(s) | 97 |
| TseI | GCWGC | 1 cut(s) | 232 |
| Tsp45I | GTSAC | 1 cut(s) | 97 |
| TspDTI | ATGAA | 1 cut(s) | 158 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 170 |
| XspI | CTAG | 3 cut(s) | 111, 185, 240 |