Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Reverse (-)

48174121 .. 48175514

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG237300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGCACCTGCGGTAGCAACAATTGACGGGGAAATAGGTCCGCAGCTTTCAGTAAGAAGAAAGAGAGAAGGTGTTGGTGCAACCTATTTTGATGCAAACATGTATCCACAAGGTTCTATGGGTGTTGTGCCAGAAGCTCTCCGCCCTAAACCTGGTCATTTGTCCCTTTCTCAGCAACGAGTTTATGAGGATTTTGTTCGGCTTCCCTGGCAAAACCAATCTATTCAAAGTTCGCATGTTTTGCCAGTTGCTACCACAGCTTCATCTGGTAGTACTGGTCTCACTAGCACATATGGTTCAGCATCCGGACAACTTAACACGGGCTACTCACCAGGACCTGGAAGCAAATTTGAAGCTGTTTCTCGTCCATTAGATGAAGCGATGGAATCCAATTCTGCCCTCCATCTTAGGTGGTGGTTGACAATGGTAAATCAGATAGGATCACCATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

150

Amino Acids

16.08

Weight (kDa)

6.83

Isoelectric Point (pI)

55.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	16
Acc36I	ACCTGC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	338
AccIII	TCCGGA	1 cut(s)	305
AciI	CCGC	3 cut(s)	11, 41, 142
AclWI	GGATC	1 cut(s)	448
AcsI	RAATTY	1 cut(s)	347
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	152, 338
AflIII	ACRYGT	1 cut(s)	99
AgsI	TTSAA	2 cut(s)	227, 353
AjnI	CCWGG	4 cut(s)	151, 206, 331, 337
AleI	CACNNNNGTG	1 cut(s)	448
AluBI	AGCT	4 cut(s)	46, 137, 260, 356
AluI	AGCT	4 cut(s)	46, 137, 260, 356
Alw26I	GTCTC	1 cut(s)	284
AlwI	GGATC	1 cut(s)	448
AlwNI	CAGNNNCTG	1 cut(s)	338
Aor13HI	TCCGGA	1 cut(s)	305
ApeKI	GCWGC	1 cut(s)	43
ApoI	RAATTY	1 cut(s)	347
AspS9I	GGNCC	2 cut(s)	38, 335
AsuHPI	GGTGA	2 cut(s)	321, 435
AvaII	GGWCC	2 cut(s)	38, 335
BanI	GGYRCC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	376, 411
BciT130I	CCWGG	4 cut(s)	153, 208, 333, 339
BciVI	GTATCC	1 cut(s)	114
BcoDI	GTCTC	1 cut(s)	284
BfaI	CTAG	1 cut(s)	285
BfuAI	ACCTGC	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	114
BisI	GCNGC	1 cut(s)	44
BlsI	GCNGC	1 cut(s)	45
BmcAI	AGTACT	1 cut(s)	274
Bme1390I	CCNGG	4 cut(s)	153, 208, 333, 339
Bme18I	GGWCC	2 cut(s)	38, 335
BmgT120I	GGNCC	2 cut(s)	38, 335
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	4 cut(s)	153, 208, 333, 339
BmsI	GCATC	2 cut(s)	82, 311
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	1 cut(s)	206
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 338
Bse1I	ACTGG	2 cut(s)	245, 280
BseAI	TCCGGA	1 cut(s)	305
BseBI	CCWGG	4 cut(s)	153, 208, 333, 339
BseDI	CCNNGG	1 cut(s)	206
BseGI	GGATG	1 cut(s)	302
BseLI	CCNNNNNNNGG	2 cut(s)	152, 338
BseMII	CTCAG	1 cut(s)	185
BseNI	ACTGG	2 cut(s)	245, 280
BseXI	GCAGC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	1 cut(s)	148
BslI	CCNNNNNNNGG	2 cut(s)	152, 338
BsmAI	GTCTC	1 cut(s)	284
BsmFI	GGGAC	1 cut(s)	148
Bso31I	GGTCTC	1 cut(s)	284
Bsp13I	TCCGGA	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	3 cut(s)	11, 41, 142
BspCNI	CTCAG	1 cut(s)	184
BspEI	TCCGGA	1 cut(s)	305
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	16
BspPI	GGATC	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	245, 280
BssECI	CCNNGG	1 cut(s)	206
BssMI	GATC	1 cut(s)	440
Bst2UI	CCWGG	4 cut(s)	153, 208, 333, 339
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstDEI	CTNAG	2 cut(s)	171, 407
BstF5I	GGATG	1 cut(s)	302
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	1 cut(s)	284
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 241, 257
BstNI	CCWGG	4 cut(s)	153, 208, 333, 339
BstNSI	RCATGY	2 cut(s)	103, 239
BstSCI	CCNGG	4 cut(s)	151, 206, 331, 337
BstV1I	GCAGC	1 cut(s)	55
BsuI	GTATCC	1 cut(s)	114
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	1 cut(s)	302
BveI	ACCTGC	1 cut(s)	16
CaiI	CAGNNNCTG	1 cut(s)	338
Cfr13I	GGNCC	2 cut(s)	38, 335
CsiI	ACCWGGT	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	273
CviAII	CATG	2 cut(s)	100, 236
CviJI	RGCY	6 cut(s)	46, 137, 202, 260, 324, 356
CviKI_1	RGCY	6 cut(s)	46, 137, 202, 260, 324, 356
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	2 cut(s)	171, 407
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
EciI	GGCGGA	1 cut(s)	131
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	2 cut(s)	38, 335
EcoO109I	RGGNCCY	1 cut(s)	335
EcoRII	CCWGG	4 cut(s)	151, 206, 331, 337
FaeI	CATG	2 cut(s)	103, 239
FaiI	YATR	6 cut(s)	101, 119, 186, 237, 292, 294
FaqI	GGGAC	1 cut(s)	148
FatI	CATG	2 cut(s)	99, 235
FauNDI	CATATG	1 cut(s)	292
Fnu4HI	GCNGC	1 cut(s)	44
FokI	GGATG	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	44
FspBI	CTAG	1 cut(s)	285
GluI	GCNGC	1 cut(s)	44
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	2 cut(s)	103, 239
HincII	GTYRAC	1 cut(s)	420
HindII	GTYRAC	1 cut(s)	420
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	321, 435
Hpy166II	GTNNAC	1 cut(s)	420
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	1 cut(s)	306
Hpy8I	GTNNAC	1 cut(s)	420
HpyAV	CCTTC	1 cut(s)	62
HpyCH4V	TGCA	2 cut(s)	80, 95
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 241, 257
HpyF3I	CTNAG	2 cut(s)	171, 407
Hsp92II	CATG	2 cut(s)	103, 239
Kpn2I	TCCGGA	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	440
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	2 cut(s)	82, 311
MabI	ACCWGGT	1 cut(s)	151
MaeI	CTAG	1 cut(s)	285
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MboII	GAAGA	1 cut(s)	69
MfeI	CAATTG	1 cut(s)	21
MluCI	AATT	3 cut(s)	21, 347, 391
MnlI	CCTC	2 cut(s)	181, 410
MroI	TCCGGA	1 cut(s)	305
MseI	TTAA	1 cut(s)	315
MslI	CAYNNNNRTG	1 cut(s)	448
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	4 cut(s)	153, 208, 333, 339
MunI	CAATTG	1 cut(s)	21
MvaI	CCWGG	4 cut(s)	153, 208, 333, 339
MwoI	GCNNNNNNNGC	3 cut(s)	208, 241, 257
NdeI	CATATG	1 cut(s)	292
NdeII	GATC	1 cut(s)	440
NlaIII	CATG	2 cut(s)	103, 239
NlaIV	GGNNCC	1 cut(s)	6
NspI	RCATGY	2 cut(s)	103, 239
OliI	CACNNNNGTG	1 cut(s)	448
PaqCI	CACCTGC	1 cut(s)	16
PciI	ACATGT	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	386
PflMI	CCANNNNNTGG	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	45
PpuMI	RGGWCCY	1 cut(s)	335
PscI	ACATGT	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	335
Psp6I	CCWGG	4 cut(s)	151, 206, 331, 337
PspGI	CCWGG	4 cut(s)	151, 206, 331, 337
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	2 cut(s)	38, 335
PspPPI	RGGWCCY	1 cut(s)	335
PstNI	CAGNNNCTG	1 cut(s)	338
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
RseI	CAYNNNNRTG	1 cut(s)	448
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	2 cut(s)	38, 335
ScaI	AGTACT	1 cut(s)	274
ScrFI	CCNGG	4 cut(s)	153, 208, 333, 339
SexAI	ACCWGGT	1 cut(s)	151
SfaNI	GCATC	2 cut(s)	82, 311
SinI	GGWCC	2 cut(s)	38, 335
SmiMI	CAYNNNNRTG	1 cut(s)	448
Sse9I	AATT	3 cut(s)	21, 347, 391
SsiI	CCGC	3 cut(s)	11, 41, 142
SspMI	CTAG	1 cut(s)	285
StyD4I	CCNGG	4 cut(s)	151, 206, 331, 337
TasI	AATT	3 cut(s)	21, 347, 391
TatI	WGTACW	1 cut(s)	272
TfiI	GAWTC	1 cut(s)	386
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	1 cut(s)	43
TspDTI	ATGAA	2 cut(s)	252, 390
Van91I	CCANNNNNTGG	1 cut(s)	338
VpaK11BI	GGWCC	2 cut(s)	38, 335
XapI	RAATTY	1 cut(s)	347
XceI	RCATGY	2 cut(s)	103, 239
XspI	CTAG	1 cut(s)	285
ZrmI	AGTACT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.