Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016401.1

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 968

Gene Structure 968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016401.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

gtgatttattctgatgaggagcggaagtttaataaagaaattactgttggccttatacgcagtgaactgctaaaccttgcagagtacaatgttcacatggcaaaacttattgatggtggcaggaataagccagcaacagagttcgccacttccttgctccaaactttggttattgaagaatctaaagttatctcagaacttcagagtcttgttgatgcaatgggaaaggctgctgcgaagcctggatctcccgagtcactgcagcaggtggttgaaattgtcaagaatcctgctgctaatggagctgctccatctggtgttaatgttgggaaggatgacaaggccagacaatcgagagagaaaaaggctagtgtctttagtattttggcctattttaggtgtcttttctgcctcagatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

139

Amino Acids

15.18

Weight (kDa)

8.57

Isoelectric Point (pI)

60.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	256
Acc36I	ACCTGC	1 cut(s)	256
AccB7I	CCANNNNNTGG	1 cut(s)	166
AccBSI	CCGCTC	1 cut(s)	22
AciI	CCGC	1 cut(s)	22
AclWI	GGATC	1 cut(s)	253
AcuI	CTGAAG	1 cut(s)	185
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	2 cut(s)	166, 396
AgsI	TTSAA	2 cut(s)	176, 275
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	2 cut(s)	30, 62
AluBI	AGCT	1 cut(s)	305
AluI	AGCT	1 cut(s)	305
AlwI	GGATC	1 cut(s)	253
Ama87I	CYCGRG	1 cut(s)	251
AoxI	GGCC	3 cut(s)	49, 342, 387
ApeKI	GCWGC	5 cut(s)	230, 233, 262, 293, 305
AvaI	CYCGRG	1 cut(s)	251
BbvI	GCAGC	5 cut(s)	217, 220, 274, 280, 292
BccI	CCATC	2 cut(s)	107, 319
BciT130I	CCWGG	1 cut(s)	243
BfaI	CTAG	1 cut(s)	369
BfmI	CTRYAG	1 cut(s)	260
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	5 cut(s)	231, 234, 263, 294, 306
BlsI	GCNGC	5 cut(s)	232, 235, 264, 295, 307
Bme1390I	CCNGG	1 cut(s)	243
BmeT110I	CYCGRG	1 cut(s)	251
BmrFI	CCNGG	1 cut(s)	243
BmsI	GCATC	1 cut(s)	205
BsaXI	ACNNNNNCTCC	2 cut(s)	11, 41
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 396
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	1 cut(s)	243
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	2 cut(s)	166, 396
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	1 cut(s)	207
BseRI	GAGGAG	1 cut(s)	32
BseXI	GCAGC	5 cut(s)	217, 220, 274, 280, 292
BshFI	GGCC	3 cut(s)	51, 344, 389
BsiHKCI	CYCGRG	1 cut(s)	251
BslI	CCNNNNNNNGG	2 cut(s)	166, 396
BsnI	GGCC	3 cut(s)	51, 344, 389
BsoBI	CYCGRG	1 cut(s)	251
Bsp143I	GATC	1 cut(s)	245
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	3 cut(s)	51, 344, 389
BspCNI	CTCAG	1 cut(s)	206
BspMAI	CTGCAG	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	1 cut(s)	253
BsrBI	CCGCTC	1 cut(s)	22
BsrDI	GCAATG	1 cut(s)	225
BssMI	GATC	1 cut(s)	245
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	193, 413
BstENI	CCTNNNNNAGG	1 cut(s)	394
BstF5I	GGATG	1 cut(s)	340
BstKTI	GATC	1 cut(s)	248
BstMBI	GATC	1 cut(s)	245
BstMWI	GCNNNNNNNGC	2 cut(s)	57, 302
BstNI	CCWGG	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	241
BstSFI	CTRYAG	1 cut(s)	260
BstV1I	GCAGC	5 cut(s)	217, 220, 274, 280, 292
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuRI	GGCC	3 cut(s)	51, 344, 389
BtsCI	GGATG	1 cut(s)	340
BtsI	GCAGTG	2 cut(s)	67, 257
BtsIMutI	CAGTG	2 cut(s)	67, 257
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	8 cut(s)	51, 130, 230, 241, 305, 344, 368, 389
CviKI_1	RGCY	8 cut(s)	51, 130, 230, 241, 305, 344, 368, 389
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	2 cut(s)	193, 413
DpnI	GATC	1 cut(s)	247
DpnII	GATC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	185
Eco88I	CYCGRG	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	394
EcoRII	CCWGG	1 cut(s)	241
FaeI	CATG	1 cut(s)	100
FaiI	YATR	2 cut(s)	56, 98
FatI	CATG	1 cut(s)	96
Fnu4HI	GCNGC	5 cut(s)	231, 234, 263, 294, 306
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	5 cut(s)	231, 234, 263, 294, 306
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	5 cut(s)	231, 234, 263, 294, 306
HaeIII	GGCC	3 cut(s)	51, 344, 389
Hin1II	CATG	1 cut(s)	100
HinfI	GANTC	4 cut(s)	179, 205, 254, 286
Hpy166II	GTNNAC	2 cut(s)	65, 94
Hpy188I	TCNGA	4 cut(s)	13, 196, 204, 416
Hpy188III	TCNNGA	3 cut(s)	251, 283, 354
Hpy8I	GTNNAC	2 cut(s)	65, 94
HpyAV	CCTTC	1 cut(s)	325
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	80, 218, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	57, 302
HpyF3I	CTNAG	2 cut(s)	193, 413
Hsp92II	CATG	1 cut(s)	100
Kzo9I	GATC	1 cut(s)	245
LmnI	GCTCC	4 cut(s)	19, 162, 302, 313
LpnPI	CCDG	8 cut(s)	106, 144, 228, 251, 255, 300, 303, 358
Lsp1109I	GCAGC	5 cut(s)	217, 220, 274, 280, 292
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	369
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	1 cut(s)	247
MbiI	CCGCTC	1 cut(s)	22
MboI	GATC	1 cut(s)	245
MboII	GAAGA	1 cut(s)	188
MflI	RGATCY	1 cut(s)	245
MluCI	AATT	2 cut(s)	39, 276
MlyI	GAGTC	2 cut(s)	214, 263
MnlI	CCTC	1 cut(s)	10
MseI	TTAA	2 cut(s)	30, 321
MspR9I	CCNGG	1 cut(s)	243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	2 cut(s)	57, 302
NdeII	GATC	1 cut(s)	245
NlaIII	CATG	1 cut(s)	100
NmuCI	GTSAC	1 cut(s)	255
PaqCI	CACCTGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	179, 286
PflMI	CCANNNNNTGG	1 cut(s)	166
PkrI	GCNGC	5 cut(s)	232, 235, 264, 295, 307
PleI	GAGTC	2 cut(s)	213, 262
PpsI	GAGTC	2 cut(s)	213, 262
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PstI	CTGCAG	1 cut(s)	264
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	30, 321
SatI	GCNGC	5 cut(s)	231, 234, 263, 294, 306
Sau3AI	GATC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	214, 263
ScrFI	CCNGG	1 cut(s)	243
SetI	ASST	4 cut(s)	78, 270, 307, 401
SfaNI	GCATC	1 cut(s)	205
SfcI	CTRYAG	1 cut(s)	260
Sse9I	AATT	2 cut(s)	39, 276
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	1 cut(s)	353
TasI	AATT	2 cut(s)	39, 276
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	2 cut(s)	179, 286
Tru1I	TTAA	2 cut(s)	30, 321
Tru9I	TTAA	2 cut(s)	30, 321
TscAI	CASTG	2 cut(s)	67, 264
TseFI	GTSAC	1 cut(s)	255
TseI	GCWGC	5 cut(s)	230, 233, 262, 293, 305
Tsp45I	GTSAC	1 cut(s)	255
TspRI	CASTG	2 cut(s)	67, 264
Van91I	CCANNNNNTGG	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	394
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.