Rmu_sc0005738.1_g000015

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005738.1
OG0003483
Physical Location & Seq
Reverse (-)
71594 .. 73427
1834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005738.1_g000015.1.cds

Sequence Viewer

Length: 558 bp
atggcgatccgcatctccctaggattttccggcttcgtggcccataacctagcctcctctgccaatattcacgtcaataattgctgtggcatccacaggtgctgggtcaggtctctgctattcggcactaaccagattagtgtcttggatgtggggttcaatgtggtttttagcgacttaaaggcccagttggaagctctggtgactaacgatgctagagaatcagaaatccagggagtcattggtgaagtgcctgatattatactcagatgtgttagtcgagatgaggccgccttggctgtggctcaaaaggttttcaagggtttgtacgagaatgcaacaaaccagattcatgttggcgcacatctagcaatgctgactgcgattcgtgatgtttgcaagcttgtctttacgcagctcactagttgggtgatttattctgatgaggagcggaagtttaataaagaaattactgtcggccttatacgcagtgaactgctaaaccttgcagagtacaatgttcacatggcaaaacttattgatggtggaaaaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

185

Amino Acids

20.39

Weight (kDa)

6.29

Isoelectric Point (pI)

23.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 451
AciI CCGC 3 cut(s) 10, 291, 451
AfaI GTAC 2 cut(s) 329, 515
AgsI TTSAA 2 cut(s) 160, 319
AhlI ACTAGT 1 cut(s) 422
AjiI CACGTC 1 cut(s) 73
AjnI CCWGG 1 cut(s) 231
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 3 cut(s) 197, 403, 418
AluI AGCT 3 cut(s) 197, 403, 418
Alw26I GTCTC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 102
AoxI GGCC 4 cut(s) 39, 183, 288, 478
ApeKI GCWGC 1 cut(s) 415
AspA2I CCTAGG 1 cut(s) 19
AspLEI GCGC 1 cut(s) 362
AspS9I GGNCC 2 cut(s) 40, 184
AsuHPI GGTGA 3 cut(s) 214, 257, 442
AvrII CCTAGG 1 cut(s) 19
BbvI GCAGC 1 cut(s) 427
BccI CCATC 1 cut(s) 536
BciT130I CCWGG 1 cut(s) 233
BcoDI GTCTC 1 cut(s) 117
BcuI ACTAGT 1 cut(s) 422
BfaI CTAG 5 cut(s) 20, 50, 216, 368, 423
BglI GCCNNNNNGGC 1 cut(s) 296
BisI GCNGC 2 cut(s) 291, 416
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 2 cut(s) 292, 417
Bme1390I CCNGG 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 40, 184
BmrFI CCNGG 1 cut(s) 233
BmrI ACTGGG 1 cut(s) 181
BmsI GCATC 3 cut(s) 21, 99, 202
BmuI ACTGGG 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 19, 232, 294
BsaXI ACNNNNNCTCC 4 cut(s) 38, 68, 440, 470
Bse1I ACTGG 1 cut(s) 187
Bse3DI GCAATG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 11
BseBI CCWGG 1 cut(s) 233
BseDI CCNNGG 3 cut(s) 19, 232, 294
BseGI GGATG 2 cut(s) 90, 154
BseJI GATNNNNATC 1 cut(s) 11
BseMI GCAATG 1 cut(s) 378
BseMII CTCAG 1 cut(s) 280
BseNI ACTGG 1 cut(s) 187
BseRI GAGGAG 2 cut(s) 46, 461
BseXI GCAGC 1 cut(s) 427
BseYI CCCAGC 1 cut(s) 102
BshFI GGCC 4 cut(s) 41, 185, 290, 480
BsiSI CCGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 117
BsmI GAATGC 1 cut(s) 340
BsnI GGCC 4 cut(s) 41, 185, 290, 480
Bso31I GGTCTC 1 cut(s) 117
Bsp143I GATC 1 cut(s) 6
BspACI CCGC 3 cut(s) 10, 291, 451
BspANI GGCC 4 cut(s) 41, 185, 290, 480
BspCNI CTCAG 1 cut(s) 279
BspTNI GGTCTC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 451
BsrDI GCAATG 1 cut(s) 378
BsrI ACTGG 1 cut(s) 187
BssECI CCNNGG 3 cut(s) 19, 232, 294
BssMI GATC 1 cut(s) 6
BssT1I CCWWGG 2 cut(s) 19, 294
Bst2UI CCWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 475
BstC8I GCNNGC 1 cut(s) 401
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 90, 154
BstHHI GCGC 1 cut(s) 362
BstKTI GATC 1 cut(s) 9
BstMAI GTCTC 1 cut(s) 117
BstMBI GATC 1 cut(s) 6
BstMWI GCNNNNNNNGC 4 cut(s) 59, 296, 368, 486
BstNI CCWGG 1 cut(s) 233
BstSCI CCNGG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 427
BsuRI GGCC 4 cut(s) 41, 185, 290, 480
BtrI CACGTC 1 cut(s) 73
BtsCI GGATG 2 cut(s) 90, 154
BtsI GCAGTG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 401
CaiI CAGNNNCTG 1 cut(s) 102
CfoI GCGC 1 cut(s) 362
Cfr13I GGNCC 2 cut(s) 40, 184
Csp6I GTAC 2 cut(s) 328, 514
CviAII CATG 2 cut(s) 353, 526
CviQI GTAC 2 cut(s) 328, 514
DdeI CTNAG 1 cut(s) 266
DpnI GATC 1 cut(s) 8
DpnII GATC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 19, 294
Eco31I GGTCTC 1 cut(s) 117
EcoRII CCWGG 1 cut(s) 231
EcoT14I CCWWGG 2 cut(s) 19, 294
ErhI CCWWGG 2 cut(s) 19, 294
FaeI CATG 2 cut(s) 356, 529
FaiI YATR 5 cut(s) 45, 263, 354, 485, 527
FalI AAGNNNNNCTT 2 cut(s) 392, 424
FatI CATG 2 cut(s) 352, 525
Fnu4HI GCNGC 2 cut(s) 291, 416
FokI GGATG 2 cut(s) 77, 161
Fsp4HI GCNGC 2 cut(s) 291, 416
FspBI CTAG 5 cut(s) 20, 50, 216, 368, 423
GlaI GCGC 1 cut(s) 361
GluI GCNGC 2 cut(s) 291, 416
GsaI CCCAGC 1 cut(s) 106
HaeIII GGCC 4 cut(s) 41, 185, 290, 480
HapII CCGG 1 cut(s) 30
HhaI GCGC 1 cut(s) 362
Hin1II CATG 2 cut(s) 356, 529
Hin6I GCGC 1 cut(s) 360
HinP1I GCGC 1 cut(s) 360
HindIII AAGCTT 1 cut(s) 401
HinfI GANTC 4 cut(s) 221, 237, 349, 385
HpaII CCGG 1 cut(s) 30
HphI GGTGA 3 cut(s) 214, 257, 442
Hpy166II GTNNAC 2 cut(s) 494, 523
Hpy188I TCNGA 3 cut(s) 226, 269, 442
Hpy188III TCNNGA 2 cut(s) 281, 389
Hpy8I GTNNAC 2 cut(s) 494, 523
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 3 cut(s) 338, 399, 509
HpyF10VI GCNNNNNNNGC 4 cut(s) 59, 296, 368, 486
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 2 cut(s) 356, 529
HspAI GCGC 1 cut(s) 360
Kzo9I GATC 1 cut(s) 6
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 1 cut(s) 427
LweI GCATC 3 cut(s) 21, 99, 202
MaeI CTAG 5 cut(s) 20, 50, 216, 368, 423
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 8
MbiI CCGCTC 1 cut(s) 451
MboI GATC 1 cut(s) 6
MluCI AATT 2 cut(s) 79, 468
MlyI GAGTC 1 cut(s) 246
MmeI TCCRAC 1 cut(s) 171
MnlI CCTC 4 cut(s) 64, 67, 280, 439
MseI TTAA 3 cut(s) 179, 459, 556
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 233
Mva1269I GAATGC 1 cut(s) 340
MvaI CCWGG 1 cut(s) 233
MwoI GCNNNNNNNGC 4 cut(s) 59, 296, 368, 486
NdeII GATC 1 cut(s) 6
NlaIII CATG 2 cut(s) 356, 529
NmuCI GTSAC 1 cut(s) 202
PctI GAATGC 1 cut(s) 340
PfeI GAWTC 3 cut(s) 221, 349, 385
PkrI GCNGC 2 cut(s) 292, 417
PleI GAGTC 1 cut(s) 245
PpsI GAGTC 1 cut(s) 245
Psp6I CCWGG 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 231
PspPI GGNCC 2 cut(s) 40, 184
PstNI CAGNNNCTG 1 cut(s) 102
RsaI GTAC 2 cut(s) 329, 515
RsaNI GTAC 2 cut(s) 328, 514
SaqAI TTAA 3 cut(s) 179, 459, 556
SatI GCNGC 2 cut(s) 291, 416
Sau3AI GATC 1 cut(s) 6
Sau96I GGNCC 2 cut(s) 40, 184
SchI GAGTC 1 cut(s) 246
ScrFI CCNGG 1 cut(s) 233
SetI ASST 9 cut(s) 51, 75, 101, 113, 199, 315, 405, 420, 507
SfaNI GCATC 3 cut(s) 21, 99, 202
SpeI ACTAGT 1 cut(s) 422
Sse9I AATT 2 cut(s) 79, 468
SsiI CCGC 3 cut(s) 10, 291, 451
SspI AATATT 1 cut(s) 67
SspMI CTAG 5 cut(s) 20, 50, 216, 368, 423
StyD4I CCNGG 1 cut(s) 231
StyI CCWWGG 2 cut(s) 19, 294
TaaI ACNGT 1 cut(s) 475
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 280
TasI AATT 2 cut(s) 79, 468
TatI WGTACW 1 cut(s) 513
TauI GCSGC 1 cut(s) 293
TfiI GAWTC 3 cut(s) 221, 349, 385
Tru1I TTAA 3 cut(s) 179, 459, 556
Tru9I TTAA 3 cut(s) 179, 459, 556
TscAI CASTG 1 cut(s) 496
TseFI GTSAC 1 cut(s) 202
TseI GCWGC 1 cut(s) 415
Tsp45I GTSAC 1 cut(s) 202
TspDTI ATGAA 1 cut(s) 341
TspRI CASTG 1 cut(s) 496
XcmI CCANNNNNNNNNTGG 2 cut(s) 239, 353
XmaJI CCTAGG 1 cut(s) 19
XspI CTAG 5 cut(s) 20, 50, 216, 368, 423
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.