Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Forward (+)

45599138 .. 45621247

Gene Structure 22110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG365000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGAGACTGGAACCATTGTCTTCACTGCTCGCAATGACCAAGAACTATAAAAGAGGTCAAATCACAGACAGAGAACTTGGTGATGCTGTTTGGAAAAATTTATTTCAGGGAAAGTTGACATACATGCATTGGAATAAAGGAGCAGAGATGGCCCCTAGTATAGGGGACCAAGGGGGAACTCTCCTTGTCAGGAAGTTACCAGCTGCAGACCCAAGGGGTTGGGGAATAAATTCTTGTCAAATATTCGCGAGGTGGACTCCATACTTCAGTGTCTTGGATGTTGGGTTCAATGTGGTTTTTAGCGACTTAAAGGCCCAGAATCTATTTGGTTTTCTTTGGTGGACTATCATGGGGAAGAGAGAGGAGGAGGAAGAATTAAGCCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03060 map03060

Pfam Domains

Protein Families

Peptidase_S24

Protein Analysis

128

Amino Acids

14.63

Weight (kDa)

7.85

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	97, 229
AcuI	CTGAAG	1 cut(s)	250
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	269, 301
AluBI	AGCT	1 cut(s)	203
AluI	AGCT	1 cut(s)	203
AoxI	GGCC	2 cut(s)	150, 312
ApeKI	GCWGC	1 cut(s)	203
ApoI	RAATTY	2 cut(s)	97, 229
Asp700I	GAANNNNTTC	1 cut(s)	229
AspS9I	GGNCC	3 cut(s)	151, 166, 313
AsuHPI	GGTGA	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	166
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	142
BfaI	CTAG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	204
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme18I	GGWCC	1 cut(s)	166
BmgT120I	GGNCC	3 cut(s)	151, 166, 313
BmiI	GGNNCC	3 cut(s)	12, 153, 167
BmsI	GCATC	1 cut(s)	73
BpiI	GAAGAC	1 cut(s)	12
BplI	GAGNNNNNCTC	2 cut(s)	241, 273
BsaJI	CCNNGG	2 cut(s)	169, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	12
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	169, 212
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	2 cut(s)	377, 380
BseXI	GCAGC	1 cut(s)	190
Bsh1236I	CGCG	1 cut(s)	248
BshFI	GGCC	2 cut(s)	152, 314
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	152, 314
Bsp68I	TCGCGA	1 cut(s)	248
BspANI	GGCC	2 cut(s)	152, 314
BspFNI	CGCG	1 cut(s)	248
BspLI	GGNNCC	3 cut(s)	12, 153, 167
BspMAI	CTGCAG	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	39
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	169, 212
BssT1I	CCWWGG	2 cut(s)	169, 212
Bst6I	CTCTTC	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	384
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	1 cut(s)	283
BstFNI	CGCG	1 cut(s)	248
BstMWI	GCNNNNNNNGC	1 cut(s)	149
BstNSI	RCATGY	1 cut(s)	127
BstSFI	CTRYAG	1 cut(s)	204
BstUI	CGCG	1 cut(s)	248
BstV1I	GCAGC	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	12
BstXI	CCANNNNNNTGG	1 cut(s)	219
BsuRI	GGCC	2 cut(s)	152, 314
BtsCI	GGATG	1 cut(s)	283
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	2 cut(s)	23, 274
BtuMI	TCGCGA	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	3 cut(s)	151, 166, 313
CviAII	CATG	2 cut(s)	124, 349
CviJI	RGCY	4 cut(s)	152, 203, 314, 381
CviKI_1	RGCY	4 cut(s)	152, 203, 314, 381
DdeI	CTNAG	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco130I	CCWWGG	2 cut(s)	169, 212
Eco47I	GGWCC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	250
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoT14I	CCWWGG	2 cut(s)	169, 212
EcoT22I	ATGCAT	1 cut(s)	129
ErhI	CCWWGG	2 cut(s)	169, 212
FaeI	CATG	2 cut(s)	127, 352
FaiI	YATR	6 cut(s)	48, 121, 125, 161, 262, 350
FaqI	GGGAC	1 cut(s)	179
FatI	CATG	2 cut(s)	123, 348
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	156
GluI	GCNGC	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	152, 314
Hin1II	CATG	2 cut(s)	127, 352
HincII	GTYRAC	1 cut(s)	117
HindII	GTYRAC	1 cut(s)	117
HinfI	GANTC	2 cut(s)	256, 319
HphI	GGTGA	1 cut(s)	92
Hpy166II	GTNNAC	3 cut(s)	117, 255, 342
Hpy188III	TCNNGA	2 cut(s)	190, 247
Hpy8I	GTNNAC	3 cut(s)	117, 255, 342
HpyCH4V	TGCA	2 cut(s)	127, 206
HpyF10VI	GCNNNNNNNGC	1 cut(s)	149
HpyF3I	CTNAG	1 cut(s)	384
Hsp92II	CATG	2 cut(s)	127, 352
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	4 cut(s)	92, 175, 213, 329
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	1 cut(s)	73
MaeI	CTAG	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	195
MboII	GAAGA	3 cut(s)	12, 367, 383
MluCI	AATT	3 cut(s)	97, 229, 374
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	5 cut(s)	47, 243, 355, 358, 361
Mph1103I	ATGCAT	1 cut(s)	129
MroXI	GAANNNNTTC	1 cut(s)	229
MseI	TTAA	2 cut(s)	308, 377
MspA1I	CMGCKG	1 cut(s)	203
MvnI	CGCG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	149
NlaIII	CATG	2 cut(s)	127, 352
NlaIV	GGNNCC	3 cut(s)	12, 153, 167
NruI	TCGCGA	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	129
NspI	RCATGY	1 cut(s)	127
PdmI	GAANNNNTTC	1 cut(s)	229
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	205
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	3 cut(s)	12, 153, 167
PspPI	GGNCC	3 cut(s)	151, 166, 313
PstI	CTGCAG	1 cut(s)	208
PvuII	CAGCTG	1 cut(s)	203
RruI	TCGCGA	1 cut(s)	248
SaqAI	TTAA	2 cut(s)	308, 377
SatI	GCNGC	1 cut(s)	204
Sau96I	GGNCC	3 cut(s)	151, 166, 313
SchI	GAGTC	1 cut(s)	250
SetI	ASST	3 cut(s)	58, 205, 254
SfaNI	GCATC	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	204
SinI	GGWCC	1 cut(s)	166
Sse9I	AATT	3 cut(s)	97, 229, 374
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	169, 212
TasI	AATT	3 cut(s)	97, 229, 374
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	2 cut(s)	308, 377
Tru9I	TTAA	2 cut(s)	308, 377
TscAI	CASTG	2 cut(s)	30, 274
TseI	GCWGC	1 cut(s)	203
TspRI	CASTG	2 cut(s)	30, 274
VpaK11BI	GGWCC	1 cut(s)	166
XagI	CCTNNNNNAGG	1 cut(s)	159
XapI	RAATTY	2 cut(s)	97, 229
XceI	RCATGY	1 cut(s)	127
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmnI	GAANNNNTTC	1 cut(s)	229
XspI	CTAG	1 cut(s)	156
Zsp2I	ATGCAT	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.