Rh6BG298900

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0003483
Physical Location & Seq
Reverse (-)
52849780 .. 52852672
2893 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG298900.1

Sequence Viewer

Length: 405 bp
ATGAAAACAGTTGATTCAGCCTTCAAACATGTAAAACCAATTGCAGGTGCTGGGCAGCAAAGGGTGAAGTGTTTAGTGAATGTGAAAGATTTTCCAAATATTATCGTTCGCTTAGCCCAGTTCTACGGTAATGGTCATAAGAAACCTATAAGCAAGGCCAAGGTCATGAAGGTGGGATTGATATTTACTGTCGAAGCTCCTCTTCATACCTCAAATGTGCAAGTTGTTGATCTAGTAACAAGGAGACCTTGTAAGGGTGGGGTTAAATATCTTGAGGATGGAACAAAAGTTGAGAGTAGCAAGAGGCACAAGAGCATCAGGATCTATAGCTATGAAAAAAGTGAAGGGCACAAGACCTTGTCAATTGGACGCCAAACTCCAGGCCTCAAGATAATGCCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

134

Amino Acids

14.9

Weight (kDa)

10.16

Isoelectric Point (pI)

31.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ribosomal_L24 PF17136 47 - 103 1.3e-09 Large ribosomal subunit protein uL24, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 35
Acc36I ACCTGC 1 cut(s) 35
AclWI GGATC 1 cut(s) 329
AcyI GRCGYC 1 cut(s) 370
AfiI CCNNNNNNNGG 2 cut(s) 44, 254
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 1 cut(s) 25
AjnI CCWGG 1 cut(s) 379
AluBI AGCT 2 cut(s) 197, 330
AluI AGCT 2 cut(s) 197, 330
Alw26I GTCTC 1 cut(s) 238
AlwI GGATC 1 cut(s) 329
AlwNI CAGNNNCTG 1 cut(s) 50
AoxI GGCC 2 cut(s) 156, 382
ApeKI GCWGC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 76
BaeGI GKGCMC 1 cut(s) 351
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 381
BcoDI GTCTC 1 cut(s) 238
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 325
BfuAI ACCTGC 1 cut(s) 35
BisI GCNGC 1 cut(s) 56
BlpI GCTNAGC 1 cut(s) 112
BlsI GCNGC 1 cut(s) 57
Bme1390I CCNGG 1 cut(s) 381
BmrFI CCNGG 1 cut(s) 381
BmrI ACTGGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 112
BpmI CTGGAG 1 cut(s) 363
Bpu1102I GCTNAGC 1 cut(s) 112
BpuEI CTTGAG 2 cut(s) 293, 371
BsaHI GRCGYC 1 cut(s) 370
BsaI GGTCTC 1 cut(s) 238
BsaJI CCNNGG 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 254
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 381
BseDI CCNNGG 1 cut(s) 159
BseGI GGATG 1 cut(s) 283
BseLI CCNNNNNNNGG 2 cut(s) 44, 254
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 351
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 50
BshFI GGCC 2 cut(s) 158, 384
BslI CCNNNNNNNGG 2 cut(s) 44, 254
BsmAI GTCTC 1 cut(s) 238
BsnI GGCC 2 cut(s) 158, 384
Bso31I GGTCTC 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 351
Bsp143I GATC 2 cut(s) 229, 321
Bsp1720I GCTNAGC 1 cut(s) 112
BspANI GGCC 2 cut(s) 158, 384
BspHI TCATGA 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 35
BspPI GGATC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 238
BsrI ACTGG 1 cut(s) 118
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 2 cut(s) 229, 321
BssNI GRCGYC 1 cut(s) 370
BssT1I CCWWGG 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 381
Bst4CI ACNGT 3 cut(s) 10, 128, 190
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 370
BstDEI CTNAG 1 cut(s) 112
BstF5I GGATG 1 cut(s) 283
BstKTI GATC 2 cut(s) 232, 324
BstMAI GTCTC 1 cut(s) 238
BstMBI GATC 2 cut(s) 229, 321
BstNI CCWGG 1 cut(s) 381
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 379
BstSFI CTRYAG 1 cut(s) 325
BstSLI GKGCMC 1 cut(s) 351
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 2 cut(s) 158, 384
BtsCI GGATG 1 cut(s) 283
BveI ACCTGC 1 cut(s) 35
CaiI CAGNNNCTG 1 cut(s) 50
CciI TCATGA 1 cut(s) 165
CseI GACGC 1 cut(s) 378
CviAII CATG 2 cut(s) 29, 166
CviJI RGCY 6 cut(s) 20, 116, 158, 197, 330, 384
CviKI_1 RGCY 6 cut(s) 20, 116, 158, 197, 330, 384
DdeI CTNAG 1 cut(s) 112
DpnI GATC 2 cut(s) 231, 323
DpnII GATC 2 cut(s) 229, 321
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco130I CCWWGG 1 cut(s) 159
Eco147I AGGCCT 1 cut(s) 384
Eco31I GGTCTC 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 379
EcoT14I CCWWGG 1 cut(s) 159
ErhI CCWWGG 1 cut(s) 159
FaeI CATG 2 cut(s) 32, 169
FaiI YATR 7 cut(s) 30, 138, 149, 167, 207, 327, 333
FalI AAGNNNNNCTT 4 cut(s) 186, 218, 232, 264
FatI CATG 2 cut(s) 28, 165
Fnu4HI GCNGC 1 cut(s) 56
FokI GGATG 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 233
GluI GCNGC 1 cut(s) 56
GsaI CCCAGC 1 cut(s) 54
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 2 cut(s) 158, 384
HgaI GACGC 1 cut(s) 378
Hin1I GRCGYC 1 cut(s) 370
Hin1II CATG 2 cut(s) 32, 169
HinfI GANTC 1 cut(s) 14
HphI GGTGA 1 cut(s) 76
Hpy188III TCNNGA 4 cut(s) 166, 272, 319, 388
HpyAV CCTTC 3 cut(s) 31, 163, 338
HpyCH4III ACNGT 3 cut(s) 10, 128, 190
HpyCH4V TGCA 2 cut(s) 44, 220
HpyF3I CTNAG 1 cut(s) 112
Hsp92I GRCGYC 1 cut(s) 370
Hsp92II CATG 2 cut(s) 32, 169
Kzo9I GATC 2 cut(s) 229, 321
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 6 cut(s) 30, 36, 131, 304, 366, 393
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 324
MaeI CTAG 1 cut(s) 233
MaeIII GTNAC 1 cut(s) 235
MalI GATC 2 cut(s) 231, 323
MboI GATC 2 cut(s) 229, 321
MboII GAAGA 1 cut(s) 194
MfeI CAATTG 2 cut(s) 39, 363
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 351
MluCI AATT 2 cut(s) 39, 363
MnlI CCTC 5 cut(s) 210, 220, 268, 297, 395
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 381
MunI CAATTG 2 cut(s) 39, 363
MvaI CCWGG 1 cut(s) 381
NdeII GATC 2 cut(s) 229, 321
NlaIII CATG 2 cut(s) 32, 169
NspI RCATGY 1 cut(s) 32
PagI TCATGA 1 cut(s) 165
PaqCI CACCTGC 1 cut(s) 35
PceI AGGCCT 1 cut(s) 384
PciI ACATGT 1 cut(s) 28
PfeI GAWTC 1 cut(s) 14
PflFI GACNNNGTC 1 cut(s) 358
PkrI GCNGC 1 cut(s) 57
PscI ACATGT 1 cut(s) 28
Psp6I CCWGG 1 cut(s) 379
PspFI CCCAGC 1 cut(s) 50
PspGI CCWGG 1 cut(s) 379
PstNI CAGNNNCTG 1 cut(s) 50
PsuI RGATCY 1 cut(s) 321
PsyI GACNNNGTC 1 cut(s) 358
RseI CAYNNNNRTG 1 cut(s) 170
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 1 cut(s) 56
Sau3AI GATC 2 cut(s) 229, 321
ScrFI CCNGG 1 cut(s) 381
SduI GDGCHC 1 cut(s) 351
SetI ASST 9 cut(s) 49, 148, 165, 174, 199, 212, 250, 332, 359
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 1 cut(s) 325
SmiMI CAYNNNNRTG 1 cut(s) 170
SmlI CTYRAG 2 cut(s) 272, 386
SmoI CTYRAG 2 cut(s) 272, 386
Sse9I AATT 2 cut(s) 39, 363
SseBI AGGCCT 1 cut(s) 384
SspI AATATT 1 cut(s) 100
SspMI CTAG 1 cut(s) 233
StuI AGGCCT 1 cut(s) 384
StyD4I CCNGG 1 cut(s) 379
StyI CCWWGG 1 cut(s) 159
TaaI ACNGT 3 cut(s) 10, 128, 190
TaqI TCGA 1 cut(s) 192
TasI AATT 2 cut(s) 39, 363
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 4 cut(s) 17, 182, 194, 348
Tth111I GACNNNGTC 1 cut(s) 358
XceI RCATGY 1 cut(s) 32
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.