Rw3G022420

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0003483
Physical Location & Seq
Forward (+)
27421486 .. 27433168
11683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G022420.1

Sequence Viewer

Length: 498 bp
ATGAGGAACGAGTACCGAGAAAACCTGCGGAGGGACGATGACGAGTTCTTCAACGGGAGTACAAGTGGTTCCAACTTCCAACCTGTGCATGACCTCACCATTGGAGTCAAGTTCGGAGCTCGCATGGTCACCATTGAAGCTAAGCCCACACTGAACTTGGCTGCTGTCAGATGGGTTGGTGGTGTTGAGTTAGAAATAATTGCAATAGCCACAGGTGATGGTCATAAGAAACCTATAAGCAAGGCCAAGGTCATGAAGGTGGGATTGATATTTACTGTCGAAGCTCCTCTTCATGCCTCAAATGTGCAAGTTGTTGATCCAGTAACAAGGATGGAACAAAAGTTTAGAGAAGCAAGAGGCACAGGAGCATCAGGATCTATAGCTATGAAAAAAGTGAAGGGCACAAGACCTTCAACCATCAATGCAAAGACGGGGAAGGTAGAGAGTCTTCTCAATCAACATCGCATCTGTGACCTCTTTACCACAGAATTCGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

165

Amino Acids

18.16

Weight (kDa)

9.48

Isoelectric Point (pI)

21.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ribosomal_L24 PF17136 83 - 114 4.1e-06 Large ribosomal subunit protein uL24, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 33
AciI CCGC 1 cut(s) 28
AclWI GGATC 2 cut(s) 311, 382
AcsI RAATTY 1 cut(s) 488
AfaI GTAC 2 cut(s) 14, 61
AfiI CCNNNNNNNGG 1 cut(s) 31
AgsI TTSAA 3 cut(s) 52, 137, 414
AluBI AGCT 4 cut(s) 119, 140, 284, 383
AluI AGCT 4 cut(s) 119, 140, 284, 383
Alw21I GWGCWC 1 cut(s) 121
AlwI GGATC 2 cut(s) 311, 382
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 161
ApoI RAATTY 1 cut(s) 488
AsuHPI GGTGA 3 cut(s) 88, 121, 227
BaeGI GKGCMC 1 cut(s) 404
BanII GRGCYC 1 cut(s) 121
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BbsI GAAGAC 1 cut(s) 440
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 1 cut(s) 148
BccI CCATC 4 cut(s) 165, 212, 325, 425
BfmI CTRYAG 1 cut(s) 378
BfuAI ACCTGC 1 cut(s) 33
BisI GCNGC 1 cut(s) 162
BlpI GCTNAGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 70
BmsI GCATC 2 cut(s) 377, 474
BpiI GAAGAC 1 cut(s) 440
Bpu1102I GCTNAGC 1 cut(s) 141
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 320
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 1 cut(s) 336
BseLI CCNNNNNNNGG 1 cut(s) 31
BseNI ACTGG 1 cut(s) 320
BseRI GAGGAG 1 cut(s) 276
BseSI GKGCMC 1 cut(s) 404
BseXI GCAGC 1 cut(s) 148
BshFI GGCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 121
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 1 cut(s) 31
BsmFI GGGAC 1 cut(s) 47
BsnI GGCC 1 cut(s) 245
Bsp1286I GDGCHC 2 cut(s) 121, 404
Bsp143I GATC 2 cut(s) 316, 374
Bsp1720I GCTNAGC 1 cut(s) 141
BspACI CCGC 1 cut(s) 28
BspANI GGCC 1 cut(s) 245
BspHI TCATGA 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 70
BspMI ACCTGC 1 cut(s) 33
BspPI GGATC 2 cut(s) 311, 382
BsrI ACTGG 1 cut(s) 320
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 2 cut(s) 316, 374
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 277
Bst6I CTCTTC 1 cut(s) 294
BstC8I GCNNGC 1 cut(s) 121
BstDEI CTNAG 1 cut(s) 141
BstEII GGTNACC 1 cut(s) 127
BstF5I GGATG 1 cut(s) 336
BstKTI GATC 2 cut(s) 319, 377
BstMBI GATC 2 cut(s) 316, 374
BstPI GGTNACC 1 cut(s) 127
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 404
BstV1I GCAGC 1 cut(s) 148
BstV2I GAAGAC 1 cut(s) 440
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
BsuRI GGCC 1 cut(s) 245
BtgZI GCGATG 1 cut(s) 446
BtsCI GGATG 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 149
BveI ACCTGC 1 cut(s) 33
Cac8I GCNNGC 1 cut(s) 121
CciI TCATGA 1 cut(s) 252
Csp6I GTAC 2 cut(s) 13, 60
CviAII CATG 4 cut(s) 89, 124, 253, 293
CviJI RGCY 8 cut(s) 119, 140, 145, 161, 209, 245, 284, 383
CviKI_1 RGCY 8 cut(s) 119, 140, 145, 161, 209, 245, 284, 383
CviQI GTAC 2 cut(s) 13, 60
DdeI CTNAG 1 cut(s) 141
DpnI GATC 2 cut(s) 318, 376
DpnII GATC 2 cut(s) 316, 374
Eam1104I CTCTTC 1 cut(s) 294
EarI CTCTTC 1 cut(s) 294
Ecl136II GAGCTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 246
Eco24I GRGCYC 1 cut(s) 121
Eco53kI GAGCTC 1 cut(s) 119
Eco91I GGTNACC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 119
EcoO65I GGTNACC 1 cut(s) 127
EcoRI GAATTC 1 cut(s) 488
EcoT14I CCWWGG 1 cut(s) 246
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 4 cut(s) 92, 127, 256, 296
FaiI YATR 8 cut(s) 90, 125, 225, 236, 254, 294, 380, 386
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FaqI GGGAC 1 cut(s) 47
FatI CATG 4 cut(s) 88, 123, 252, 292
Fnu4HI GCNGC 1 cut(s) 162
FokI GGATG 1 cut(s) 343
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 162
HaeIII GGCC 1 cut(s) 245
Hin1II CATG 4 cut(s) 92, 127, 256, 296
HinfI GANTC 2 cut(s) 105, 445
HphI GGTGA 3 cut(s) 88, 121, 227
Hpy188I TCNGA 2 cut(s) 116, 170
Hpy188III TCNNGA 2 cut(s) 253, 372
HpyAV CCTTC 4 cut(s) 250, 391, 420, 430
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4V TGCA 4 cut(s) 88, 203, 307, 425
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 4 cut(s) 92, 127, 256, 296
Kzo9I GATC 2 cut(s) 316, 374
LmnI GCTCC 3 cut(s) 116, 289, 365
LpnPI CCDG 6 cut(s) 38, 96, 198, 333, 348, 357
Lsp1109I GCAGC 1 cut(s) 148
LweI GCATC 2 cut(s) 377, 474
MaeIII GTNAC 3 cut(s) 127, 322, 470
MalI GATC 2 cut(s) 318, 376
MboI GATC 2 cut(s) 316, 374
MboII GAAGA 3 cut(s) 40, 281, 440
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 2 cut(s) 121, 404
MluCI AATT 2 cut(s) 198, 488
MlyI GAGTC 2 cut(s) 114, 454
MmeI TCCRAC 2 cut(s) 96, 103
MnlI CCTC 6 cut(s) 24, 104, 297, 307, 350, 485
MseI TTAA 1 cut(s) 496
MslI CAYNNNNRTG 1 cut(s) 257
NdeII GATC 2 cut(s) 316, 374
NlaIII CATG 4 cut(s) 92, 127, 256, 296
NlaIV GGNNCC 1 cut(s) 70
NmuCI GTSAC 2 cut(s) 127, 470
PagI TCATGA 1 cut(s) 252
PkrI GCNGC 1 cut(s) 163
PleI GAGTC 2 cut(s) 113, 453
PpsI GAGTC 2 cut(s) 113, 453
Psp124BI GAGCTC 1 cut(s) 121
PspEI GGTNACC 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 70
PsrI GAACNNNNNNTAC 2 cut(s) 52, 84
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 2 cut(s) 14, 61
RsaNI GTAC 2 cut(s) 13, 60
RseI CAYNNNNRTG 1 cut(s) 257
SacI GAGCTC 1 cut(s) 121
SaqAI TTAA 1 cut(s) 496
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 2 cut(s) 316, 374
SchI GAGTC 2 cut(s) 114, 454
SduI GDGCHC 2 cut(s) 121, 404
SfaNI GCATC 2 cut(s) 377, 474
SfcI CTRYAG 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 257
Sse9I AATT 2 cut(s) 198, 488
SsiI CCGC 1 cut(s) 28
SstI GAGCTC 1 cut(s) 121
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 279, 492
TasI AATT 2 cut(s) 198, 488
TatI WGTACW 1 cut(s) 59
Tru1I TTAA 1 cut(s) 496
Tru9I TTAA 1 cut(s) 496
TscAI CASTG 1 cut(s) 156
TseFI GTSAC 2 cut(s) 127, 470
TseI GCWGC 1 cut(s) 161
Tsp45I GTSAC 2 cut(s) 127, 470
TspDTI ATGAA 3 cut(s) 269, 281, 401
TspRI CASTG 1 cut(s) 156
XapI RAATTY 1 cut(s) 488
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.