Rmu_sc0000079.1_g000003

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000079.1
OG0003483
Physical Location & Seq
Forward (+)
12803 .. 14537
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000079.1_g000003.1.cds

Sequence Viewer

Length: 846 bp
atgtatccacaaggttctatgggtgttgtgccagaagctctccgccctaaacctggtcatttgtccctttctcagcaacgagtttatgaggattttgttcggcttccctggcaaaaccaatctattcaaagttcgcacgttctgccagttgctaccacagcttcatctggtagtactggtctcactagcacatatggttcagcatccggacaacttaacacgggctactcaccaggacctggaagcaaatttgaagatgtttctcgtccattagatgaagcgatggaatccaattctgccctccatcttaggttggtgttcatagaatctggagtgtcctcacagccaccaccttcacctgctgtaactgaacgtcttggaagtctctcagaaccttccctcaccacaggggctgcattggaaaaataccagattgttgcacagaagttggaagctctggtgactaacgatgctagagaatcagaaatccagggagtcattggtgaagtgcctgatattatactcagatgtgttagtcgagatgaggccgccttggctgtggctcaaaaggttttcaagggtttgtacgagaatgcaacaaaccagattcatgttggcgcacatctagcaatgctgactgcgattcgtgatgtttgcaagcttgtctttacgcagctcaatagttgggtatgcactattacactggcagatattgtttacgcagtccggccctcccctttgaatcaagggactcgatcaggtatgagatacacacctatacctgctacgtgtaggttttatgctgatgcaaatgtgaaagctttagtctataattgcttctgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

281

Amino Acids

30.27

Weight (kDa)

6.22

Isoelectric Point (pI)

40.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 367
Acc36I ACCTGC 2 cut(s) 367, 790
AccB7I CCANNNNNTGG 1 cut(s) 239
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 2 cut(s) 43, 549
AcsI RAATTY 1 cut(s) 248
AfaI GTAC 2 cut(s) 175, 587
AfiI CCNNNNNNNGG 2 cut(s) 53, 239
AflIII ACRYGT 1 cut(s) 788
AgsI TTSAA 4 cut(s) 128, 254, 577, 742
AjnI CCWGG 5 cut(s) 52, 107, 232, 238, 489
AluBI AGCT 6 cut(s) 38, 161, 455, 661, 676, 821
AluI AGCT 6 cut(s) 38, 161, 455, 661, 676, 821
Alw26I GTCTC 2 cut(s) 185, 389
AlwNI CAGNNNCTG 2 cut(s) 239, 413
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 2 cut(s) 546, 728
ApeKI GCWGC 2 cut(s) 413, 673
ApoI RAATTY 1 cut(s) 248
AspLEI GCGC 1 cut(s) 620
AspS9I GGNCC 2 cut(s) 236, 729
AsuHPI GGTGA 5 cut(s) 222, 348, 394, 472, 515
AvaII GGWCC 1 cut(s) 236
BbvI GCAGC 2 cut(s) 400, 685
BccI CCATC 2 cut(s) 277, 312
BciT130I CCWGG 5 cut(s) 54, 109, 234, 240, 491
BciVI GTATCC 1 cut(s) 15
BcoDI GTCTC 2 cut(s) 185, 389
BfaI CTAG 3 cut(s) 186, 474, 626
BfuAI ACCTGC 2 cut(s) 367, 790
BfuI GTATCC 1 cut(s) 15
BglI GCCNNNNNGGC 1 cut(s) 554
BisI GCNGC 3 cut(s) 414, 549, 674
BlsI GCNGC 3 cut(s) 415, 550, 675
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 5 cut(s) 54, 109, 234, 240, 491
Bme18I GGWCC 1 cut(s) 236
BmgT120I GGNCC 2 cut(s) 236, 729
BmrFI CCNGG 5 cut(s) 54, 109, 234, 240, 491
BmsI GCATC 3 cut(s) 212, 460, 796
BpmI CTGGAG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 789
BsaI GGTCTC 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 107, 490, 552
BsaWI WCCGGW 1 cut(s) 206
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 239
Bse1I ACTGG 3 cut(s) 146, 181, 708
Bse3DI GCAATG 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 5 cut(s) 54, 109, 234, 240, 491
BseDI CCNNGG 3 cut(s) 107, 490, 552
BseGI GGATG 1 cut(s) 203
BseLI CCNNNNNNNGG 2 cut(s) 53, 239
BseMI GCAATG 1 cut(s) 636
BseMII CTCAG 3 cut(s) 86, 402, 538
BseNI ACTGG 3 cut(s) 146, 181, 708
BseXI GCAGC 2 cut(s) 400, 685
BshFI GGCC 2 cut(s) 548, 730
BsiSI CCGG 2 cut(s) 207, 727
BslFI GGGAC 2 cut(s) 49, 763
BslI CCNNNNNNNGG 2 cut(s) 53, 239
BsmAI GTCTC 2 cut(s) 185, 389
BsmFI GGGAC 2 cut(s) 49, 763
BsmI GAATGC 1 cut(s) 598
BsnI GGCC 2 cut(s) 548, 730
Bso31I GGTCTC 1 cut(s) 185
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 1 cut(s) 755
BspACI CCGC 2 cut(s) 43, 549
BspANI GGCC 2 cut(s) 548, 730
BspCNI CTCAG 3 cut(s) 85, 401, 537
BspEI TCCGGA 1 cut(s) 206
BspMI ACCTGC 2 cut(s) 367, 790
BspTNI GGTCTC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 636
BsrI ACTGG 3 cut(s) 146, 181, 708
BssECI CCNNGG 3 cut(s) 107, 490, 552
BssMI GATC 1 cut(s) 755
BssT1I CCWWGG 1 cut(s) 552
Bst2UI CCWGG 5 cut(s) 54, 109, 234, 240, 491
BstAPI GCANNNNNTGC 1 cut(s) 142
BstBAI YACGTR 1 cut(s) 789
BstC8I GCNNGC 1 cut(s) 659
BstDEI CTNAG 4 cut(s) 72, 308, 388, 524
BstF5I GGATG 1 cut(s) 203
BstHHI GCGC 1 cut(s) 620
BstKTI GATC 1 cut(s) 758
BstMAI GTCTC 2 cut(s) 185, 389
BstMBI GATC 1 cut(s) 755
BstMWI GCNNNNNNNGC 5 cut(s) 109, 142, 158, 554, 626
BstNI CCWGG 5 cut(s) 54, 109, 234, 240, 491
BstSCI CCNGG 5 cut(s) 52, 107, 232, 238, 489
BstV1I GCAGC 2 cut(s) 400, 685
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 548, 730
BtgZI GCGATG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 203
BtsIMutI CAGTG 1 cut(s) 701
BveI ACCTGC 2 cut(s) 367, 790
Cac8I GCNNGC 1 cut(s) 659
CaiI CAGNNNCTG 2 cut(s) 239, 413
CfoI GCGC 1 cut(s) 620
Cfr13I GGNCC 2 cut(s) 236, 729
CsiI ACCWGGT 1 cut(s) 52
Csp6I GTAC 2 cut(s) 174, 586
CviAII CATG 1 cut(s) 611
CviQI GTAC 2 cut(s) 174, 586
DdeI CTNAG 4 cut(s) 72, 308, 388, 524
DpnI GATC 1 cut(s) 757
DpnII GATC 1 cut(s) 755
EciI GGCGGA 1 cut(s) 32
Eco130I CCWWGG 1 cut(s) 552
Eco31I GGTCTC 1 cut(s) 185
Eco47I GGWCC 1 cut(s) 236
EcoO109I RGGNCCY 1 cut(s) 236
EcoRII CCWGG 5 cut(s) 52, 107, 232, 238, 489
EcoT14I CCWWGG 1 cut(s) 552
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 1 cut(s) 614
FalI AAGNNNNNCTT 2 cut(s) 650, 682
FaqI GGGAC 2 cut(s) 49, 763
FatI CATG 1 cut(s) 610
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 414, 549, 674
FokI GGATG 1 cut(s) 190
Fsp4HI GCNGC 3 cut(s) 414, 549, 674
FspBI CTAG 3 cut(s) 186, 474, 626
GlaI GCGC 1 cut(s) 619
GluI GCNGC 3 cut(s) 414, 549, 674
GsuI CTGGAG 1 cut(s) 351
HaeIII GGCC 2 cut(s) 548, 730
HapII CCGG 2 cut(s) 207, 727
HhaI GCGC 1 cut(s) 620
Hin1II CATG 1 cut(s) 614
Hin6I GCGC 1 cut(s) 618
HinP1I GCGC 1 cut(s) 618
HindIII AAGCTT 2 cut(s) 659, 819
HinfI GANTC 8 cut(s) 287, 326, 479, 495, 607, 643, 742, 751
HpaII CCGG 2 cut(s) 207, 727
HphI GGTGA 5 cut(s) 222, 348, 394, 472, 515
Hpy166II GTNNAC 1 cut(s) 718
Hpy188I TCNGA 3 cut(s) 391, 484, 527
Hpy188III TCNNGA 4 cut(s) 207, 330, 539, 647
Hpy8I GTNNAC 1 cut(s) 718
HpyAV CCTTC 2 cut(s) 363, 405
HpyCH4IV ACGT 3 cut(s) 138, 373, 788
HpyCH4V TGCA 6 cut(s) 416, 440, 596, 657, 693, 809
HpyF10VI GCNNNNNNNGC 5 cut(s) 109, 142, 158, 554, 626
HpyF3I CTNAG 4 cut(s) 72, 308, 388, 524
HpySE526I ACGT 3 cut(s) 138, 373, 788
Hsp92II CATG 1 cut(s) 614
HspAI GCGC 1 cut(s) 618
Kpn2I TCCGGA 1 cut(s) 206
Kzo9I GATC 1 cut(s) 755
Lsp1109I GCAGC 2 cut(s) 400, 685
LweI GCATC 3 cut(s) 212, 460, 796
MabI ACCWGGT 1 cut(s) 52
MaeI CTAG 3 cut(s) 186, 474, 626
MaeII ACGT 3 cut(s) 138, 373, 788
MaeIII GTNAC 2 cut(s) 364, 460
MalI GATC 1 cut(s) 757
MboI GATC 1 cut(s) 755
MboII GAAGA 1 cut(s) 266
MluCI AATT 3 cut(s) 248, 292, 832
MlyI GAGTC 2 cut(s) 504, 745
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 6 cut(s) 82, 311, 349, 410, 538, 742
MroI TCCGGA 1 cut(s) 206
MseI TTAA 1 cut(s) 216
MspI CCGG 2 cut(s) 207, 727
MspR9I CCNGG 5 cut(s) 54, 109, 234, 240, 491
Mva1269I GAATGC 1 cut(s) 598
MvaI CCWGG 5 cut(s) 54, 109, 234, 240, 491
MwoI GCNNNNNNNGC 5 cut(s) 109, 142, 158, 554, 626
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 755
NlaIII CATG 1 cut(s) 614
NmuCI GTSAC 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 367
PctI GAATGC 1 cut(s) 598
PfeI GAWTC 6 cut(s) 287, 326, 479, 607, 643, 742
PflMI CCANNNNNTGG 1 cut(s) 239
PkrI GCNGC 3 cut(s) 415, 550, 675
PleI GAGTC 2 cut(s) 503, 745
PpsI GAGTC 2 cut(s) 503, 745
Ppu21I YACGTR 1 cut(s) 789
PpuMI RGGWCCY 1 cut(s) 236
Psp5II RGGWCCY 1 cut(s) 236
Psp6I CCWGG 5 cut(s) 52, 107, 232, 238, 489
PspGI CCWGG 5 cut(s) 52, 107, 232, 238, 489
PspPI GGNCC 2 cut(s) 236, 729
PspPPI RGGWCCY 1 cut(s) 236
PstNI CAGNNNCTG 2 cut(s) 239, 413
RsaI GTAC 2 cut(s) 175, 587
RsaNI GTAC 2 cut(s) 174, 586
SaqAI TTAA 1 cut(s) 216
SatI GCNGC 3 cut(s) 414, 549, 674
Sau3AI GATC 1 cut(s) 755
Sau96I GGNCC 2 cut(s) 236, 729
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 2 cut(s) 504, 745
ScrFI CCNGG 5 cut(s) 54, 109, 234, 240, 491
SexAI ACCWGGT 1 cut(s) 52
SfaNI GCATC 3 cut(s) 212, 460, 796
SinI GGWCC 1 cut(s) 236
Sse9I AATT 3 cut(s) 248, 292, 832
SsiI CCGC 2 cut(s) 43, 549
SspMI CTAG 3 cut(s) 186, 474, 626
StyD4I CCNGG 5 cut(s) 52, 107, 232, 238, 489
StyI CCWWGG 1 cut(s) 552
TaiI ACGT 3 cut(s) 141, 376, 791
TaqI TCGA 2 cut(s) 538, 754
TasI AATT 3 cut(s) 248, 292, 832
TatI WGTACW 1 cut(s) 173
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 6 cut(s) 287, 326, 479, 607, 643, 742
Tru1I TTAA 1 cut(s) 216
Tru9I TTAA 1 cut(s) 216
TscAI CASTG 1 cut(s) 708
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 2 cut(s) 413, 673
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 4 cut(s) 153, 291, 310, 599
TspRI CASTG 1 cut(s) 708
Van91I CCANNNNNTGG 1 cut(s) 239
VpaK11BI GGWCC 1 cut(s) 236
XapI RAATTY 1 cut(s) 248
XcmI CCANNNNNNNNNTGG 2 cut(s) 497, 611
XspI CTAG 3 cut(s) 186, 474, 626
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.