Rw4G018200

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0003483
Physical Location & Seq
Forward (+)
40457190 .. 40458951
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018200.1

Sequence Viewer

Length: 282 bp
ATGGTTCTCTACTTGAAAGTAGAACGATTCAGCCATCGCTTTACAGGTGATGGTCATAAGAAACCTATAAGCAAGGCCAAGGTCATGAAGGTGGGATTGATATTTACTGTCGAAGCTCCTCTTCATGCCTCAAATGTGCAAGTTGTTGATCCAGTAACAGGGAGACCTTGTAAGGGTGGGGTTAAATATCTTGAGGATGGAACAAAAGTTGAGAGTAGCAAGAGGCACAGGAGCATCAGGATCTATAGCTATGAAAAAAGTGAAGGGCACAAGACCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

93

Amino Acids

10.48

Weight (kDa)

9.9

Isoelectric Point (pI)

25.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ribosomal_L24 PF17136 26 - 75 2.1e-12 Large ribosomal subunit protein uL24, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 143, 248
AfiI CCNNNNNNNGG 2 cut(s) 158, 173
AgsI TTSAA 1 cut(s) 16
AluBI AGCT 2 cut(s) 116, 249
AluI AGCT 2 cut(s) 116, 249
Alw26I GTCTC 1 cut(s) 157
AlwI GGATC 2 cut(s) 143, 248
AoxI GGCC 1 cut(s) 75
AsuHPI GGTGA 1 cut(s) 59
BaeGI GKGCMC 1 cut(s) 270
BccI CCATC 3 cut(s) 42, 44, 191
BcoDI GTCTC 1 cut(s) 157
BfmI CTRYAG 1 cut(s) 244
BmsI GCATC 1 cut(s) 243
BpuEI CTTGAG 1 cut(s) 212
BsaI GGTCTC 1 cut(s) 157
BsaJI CCNNGG 1 cut(s) 78
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
Bsc4I CCNNNNNNNGG 2 cut(s) 158, 173
Bse1I ACTGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 1 cut(s) 202
BseLI CCNNNNNNNGG 2 cut(s) 158, 173
BseNI ACTGG 1 cut(s) 152
BseRI GAGGAG 1 cut(s) 108
BseSI GKGCMC 1 cut(s) 270
BshFI GGCC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 158, 173
BsmAI GTCTC 1 cut(s) 157
BsnI GGCC 1 cut(s) 77
Bso31I GGTCTC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 2 cut(s) 148, 240
BspANI GGCC 1 cut(s) 77
BspHI TCATGA 1 cut(s) 84
BspPI GGATC 2 cut(s) 143, 248
BspTNI GGTCTC 1 cut(s) 157
BsrI ACTGG 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 148, 240
BssT1I CCWWGG 1 cut(s) 78
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 1 cut(s) 126
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 2 cut(s) 151, 243
BstMAI GTCTC 1 cut(s) 157
BstMBI GATC 2 cut(s) 148, 240
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 270
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 1 cut(s) 77
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 1 cut(s) 202
CciI TCATGA 1 cut(s) 84
CviAII CATG 2 cut(s) 85, 125
CviJI RGCY 4 cut(s) 33, 77, 116, 249
CviKI_1 RGCY 4 cut(s) 33, 77, 116, 249
DpnI GATC 2 cut(s) 150, 242
DpnII GATC 2 cut(s) 148, 240
Eam1104I CTCTTC 1 cut(s) 126
EarI CTCTTC 1 cut(s) 126
Eco130I CCWWGG 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 2 cut(s) 88, 128
FaiI YATR 6 cut(s) 57, 68, 86, 126, 246, 252
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 2 cut(s) 84, 124
FokI GGATG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 77
Hin1II CATG 2 cut(s) 88, 128
HinfI GANTC 1 cut(s) 27
HphI GGTGA 1 cut(s) 59
Hpy188III TCNNGA 3 cut(s) 85, 191, 238
HpyAV CCTTC 2 cut(s) 82, 257
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4V TGCA 1 cut(s) 139
Hsp92II CATG 2 cut(s) 88, 128
Kzo9I GATC 2 cut(s) 148, 240
LmnI GCTCC 2 cut(s) 121, 231
LpnPI CCDG 5 cut(s) 30, 144, 165, 214, 223
LweI GCATC 1 cut(s) 243
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 150, 242
MboI GATC 2 cut(s) 148, 240
MboII GAAGA 1 cut(s) 113
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 270
MnlI CCTC 4 cut(s) 129, 139, 187, 216
MseI TTAA 1 cut(s) 183
MslI CAYNNNNRTG 1 cut(s) 89
NdeII GATC 2 cut(s) 148, 240
NlaIII CATG 2 cut(s) 88, 128
PagI TCATGA 1 cut(s) 84
PfeI GAWTC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 240
RseI CAYNNNNRTG 1 cut(s) 89
SaqAI TTAA 1 cut(s) 183
Sau3AI GATC 2 cut(s) 148, 240
SduI GDGCHC 1 cut(s) 270
SetI ASST 8 cut(s) 49, 67, 84, 93, 118, 169, 251, 278
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 111
TfiI GAWTC 1 cut(s) 27
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TspDTI ATGAA 3 cut(s) 101, 113, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.