Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Reverse (-)

19446738 .. 19452132

Gene Structure 5395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00233470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCATTCCCCGGCTGTTGTTACCCTTTTCTAGGTCGTTTTTCTTCGTCTTCGAGACTGCACTATACCAAAATCTTCACCTTCCTATTTCAATTTGCTCTTATGGCGATCCGCATCTCCCTAGGATTTTCCGGCTTCATTAGTGTCTTGGATGTGGGGTTCAATGTGGTTTTTAGCGACTTAAAGGCCCAGGTTTTCAAGGGTTTGTACGAGAATGCAACAAACCAGATTCATGTTGGCGCACATCTAGCAATGTTGACTGCGATTCGTGATATCGATTCATTCGATCCCCAAAACCAGCAAAACAGACCCAAGCTCCACCGCAACTCGATCTTCGCTCTTCGCCCTCCCCCAAGCCACCGCAGAACGCATCGATTCATTCGATCCCCAAAACCAGCAAAACAGACCCAAGCGACCGCAGCCCTTCGCTCTTCACCATCGCCCAAGCCATCGCAGCTCCACCGCAGCTCTTCGCTCGTCGCCCTCCCCCAAGCCACCGCAGAACAGATCGATTCATTCGATCCCCAAAACCAGCAAAACAGACCGAAGCCACCGCAGCTCTTCGCTCTTCGCCCTCCCCCAAGCCACCGCAGTCTTCGCTCTTCTTCGTACTCCCCAAGCCACCGCAGCCTCTTCGCCTTCGATCGCCTTCCCTCAAGCCACCGCAGGTCTTCGCTCTCCACCCTCCCCCAAGCCACCGCGTCTCCGCCTCGTACTCCCTCTCGCTCCGTGCCTCCTCCTCGAAACGTTATTAGAGCTGGTCGACAAGTTGTGGTTTCTAATTGTGATATTGTTGTTGGTGATGTGAGCCTTCATGCTTTTTCACAAGGATTCAAGGAACCCATTTCTACGGTCTGGTGGAAAGTAGCACATGGCAGTGCTACTATGCTGGTGCTTTTAAAGGAGGTTGCTACTTTCATGGGTGCTGTCGGATTCATGGGTGCTGCCATTGTTGCATATGTTGTTTGGTTCAGAGACTTCTTTACTGGTGATAATTCAACTAGTGACCATGAAATTCGAGGGAGTCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0009506 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0030054 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CaATP_NAI Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase

Protein Analysis

343

Amino Acids

38.05

Weight (kDa)

10.99

Isoelectric Point (pI)

59.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	657
AccI	GTMKAC	1 cut(s)	763
AccII	CGCG	1 cut(s)	701
AclI	AACGTT	1 cut(s)	747
AclWI	GGATC	4 cut(s)	103, 281, 378, 515
AcsI	RAATTY	1 cut(s)	1014
AfaI	GTAC	3 cut(s)	209, 611, 715
AfiI	CCNNNNNNNGG	1 cut(s)	32
AgsI	TTSAA	5 cut(s)	92, 163, 199, 835, 999
AhlI	ACTAGT	1 cut(s)	1001
AjnI	CCWGG	1 cut(s)	189
AloI	GAACNNNNNNTCC	2 cut(s)	143, 175
AluBI	AGCT	5 cut(s)	316, 457, 468, 559, 758
AluI	AGCT	5 cut(s)	316, 457, 468, 559, 758
Alw26I	GTCTC	3 cut(s)	49, 708, 969
AlwI	GGATC	4 cut(s)	103, 281, 378, 515
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	6 cut(s)	419, 454, 465, 556, 627, 944
ApoI	RAATTY	1 cut(s)	1014
AspA2I	CCTAGG	1 cut(s)	121
AspLEI	GCGC	1 cut(s)	242
AspS9I	GGNCC	1 cut(s)	187
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	4 cut(s)	70, 426, 812, 1001
AvrII	CCTAGG	1 cut(s)	121
BbsI	GAAGAC	3 cut(s)	42, 587, 663
BbvI	GCAGC	6 cut(s)	431, 466, 477, 568, 639, 931
BccI	CCATC	2 cut(s)	445, 457
BcgI	CGANNNNNNTGC	2 cut(s)	616, 650
BciT130I	CCWGG	1 cut(s)	191
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	3 cut(s)	49, 708, 969
BcuI	ACTAGT	1 cut(s)	1001
BfaI	CTAG	4 cut(s)	32, 122, 248, 1002
BfuAI	ACCTGC	1 cut(s)	657
BisI	GCNGC	6 cut(s)	420, 455, 466, 557, 628, 945
BlnI	CCTAGG	1 cut(s)	121
BlsI	GCNGC	6 cut(s)	421, 456, 467, 558, 629, 946
Bme1390I	CCNGG	2 cut(s)	12, 191
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	840
BmrFI	CCNGG	2 cut(s)	12, 191
BmsI	GCATC	2 cut(s)	123, 379
BpiI	GAAGAC	3 cut(s)	42, 587, 663
BpuEI	CTTGAG	1 cut(s)	640
BpuMI	CCSGG	1 cut(s)	12
Bsa29I	ATCGAT	3 cut(s)	276, 373, 510
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	10, 121, 189
BsaXI	ACNNNNNCTCC	4 cut(s)	300, 330, 688, 718
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	991
Bse3DI	GCAATG	1 cut(s)	258
Bse8I	GATNNNNATC	1 cut(s)	113
BseBI	CCWGG	1 cut(s)	191
BseCI	ATCGAT	3 cut(s)	276, 373, 510
BseDI	CCNNGG	3 cut(s)	10, 121, 189
BseGI	GGATG	1 cut(s)	157
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	258
BseNI	ACTGG	1 cut(s)	991
BseRI	GAGGAG	2 cut(s)	726, 729
BseXI	GCAGC	6 cut(s)	431, 466, 477, 568, 639, 931
BsgI	GTGCAG	1 cut(s)	44
Bsh1236I	CGCG	1 cut(s)	701
Bsh1285I	CGRYCG	2 cut(s)	417, 646
BshFI	GGCC	1 cut(s)	188
BshVI	ATCGAT	3 cut(s)	276, 373, 510
BsiEI	CGRYCG	2 cut(s)	417, 646
BsiSI	CCGG	2 cut(s)	12, 132
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmAI	GTCTC	3 cut(s)	49, 708, 969
BsmBI	CGTCTC	1 cut(s)	708
BsmI	GAATGC	2 cut(s)	5, 220
BsnI	GGCC	1 cut(s)	188
Bsp143I	GATC	7 cut(s)	108, 286, 330, 383, 507, 520, 643
BspANI	GGCC	1 cut(s)	188
BspDI	ATCGAT	3 cut(s)	276, 373, 510
BspFNI	CGCG	1 cut(s)	701
BspLI	GGNNCC	1 cut(s)	840
BspMI	ACCTGC	1 cut(s)	657
BspPI	GGATC	4 cut(s)	103, 281, 378, 515
BspQI	GCTCTTC	6 cut(s)	345, 436, 475, 566, 573, 607
BsrDI	GCAATG	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	991
BssECI	CCNNGG	3 cut(s)	10, 121, 189
BssMI	GATC	7 cut(s)	108, 286, 330, 383, 507, 520, 643
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	853
Bst6I	CTCTTC	7 cut(s)	345, 436, 475, 566, 573, 607, 638
BstENI	CCTNNNNNAGG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	157
BstFNI	CGCG	1 cut(s)	701
BstHHI	GCGC	1 cut(s)	242
BstKTI	GATC	7 cut(s)	111, 289, 333, 386, 510, 523, 646
BstMAI	GTCTC	3 cut(s)	49, 708, 969
BstMBI	GATC	7 cut(s)	108, 286, 330, 383, 507, 520, 643
BstMCI	CGRYCG	2 cut(s)	417, 646
BstMWI	GCNNNNNNNGC	8 cut(s)	104, 248, 419, 454, 556, 597, 627, 953
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	2 cut(s)	10, 189
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	6 cut(s)	431, 466, 477, 568, 639, 931
BstV2I	GAAGAC	3 cut(s)	42, 587, 663
Bsu15I	ATCGAT	3 cut(s)	276, 373, 510
BsuRI	GGCC	1 cut(s)	188
BsuTUI	ATCGAT	3 cut(s)	276, 373, 510
BtgZI	GCGATG	2 cut(s)	423, 435
BtsCI	GGATG	1 cut(s)	157
BtsI	GCAGTG	1 cut(s)	883
BtsIMutI	CAGTG	1 cut(s)	883
BveI	ACCTGC	1 cut(s)	657
CfoI	GCGC	1 cut(s)	242
Cfr13I	GGNCC	1 cut(s)	187
ClaI	ATCGAT	3 cut(s)	276, 373, 510
CseI	GACGC	1 cut(s)	690
Csp6I	GTAC	3 cut(s)	208, 610, 714
CviAII	CATG	6 cut(s)	233, 815, 872, 919, 937, 1010
CviQI	GTAC	3 cut(s)	208, 610, 714
DpnI	GATC	7 cut(s)	110, 288, 332, 385, 509, 522, 645
DpnII	GATC	7 cut(s)	108, 286, 330, 383, 507, 520, 643
DraI	TTTAAA	1 cut(s)	900
Eam1104I	CTCTTC	7 cut(s)	345, 436, 475, 566, 573, 607, 638
EarI	CTCTTC	7 cut(s)	345, 436, 475, 566, 573, 607, 638
EciI	GGCGGA	1 cut(s)	696
Eco130I	CCWWGG	1 cut(s)	121
Eco32I	GATATC	1 cut(s)	274
EcoNI	CCTNNNNNAGG	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	189
EcoRV	GATATC	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
Esp3I	CGTCTC	1 cut(s)	708
FaeI	CATG	6 cut(s)	236, 818, 875, 922, 940, 1013
FatI	CATG	6 cut(s)	232, 814, 871, 918, 936, 1009
FauNDI	CATATG	1 cut(s)	958
FblI	GTMKAC	1 cut(s)	763
Fnu4HI	GCNGC	6 cut(s)	420, 455, 466, 557, 628, 945
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	6 cut(s)	420, 455, 466, 557, 628, 945
FspBI	CTAG	4 cut(s)	32, 122, 248, 1002
GlaI	GCGC	1 cut(s)	241
GluI	GCNGC	6 cut(s)	420, 455, 466, 557, 628, 945
HaeIII	GGCC	1 cut(s)	188
HapII	CCGG	2 cut(s)	12, 132
HgaI	GACGC	1 cut(s)	690
HhaI	GCGC	1 cut(s)	242
Hin1II	CATG	6 cut(s)	236, 818, 875, 922, 940, 1013
Hin6I	GCGC	1 cut(s)	240
HinP1I	GCGC	1 cut(s)	240
HincII	GTYRAC	2 cut(s)	258, 764
HindII	GTYRAC	2 cut(s)	258, 764
HinfI	GANTC	8 cut(s)	229, 265, 278, 375, 512, 831, 933, 1024
HpaII	CCGG	2 cut(s)	12, 132
HphI	GGTGA	4 cut(s)	70, 426, 812, 1001
Hpy166II	GTNNAC	2 cut(s)	258, 764
Hpy188I	TCNGA	2 cut(s)	932, 974
Hpy188III	TCNNGA	2 cut(s)	54, 269
Hpy8I	GTNNAC	2 cut(s)	258, 764
Hpy99I	CGWCG	1 cut(s)	482
HpyAV	CCTTC	5 cut(s)	91, 434, 649, 659, 821
HpyCH4III	ACNGT	1 cut(s)	853
HpyCH4IV	ACGT	1 cut(s)	747
HpyCH4V	TGCA	3 cut(s)	61, 218, 956
HpyF10VI	GCNNNNNNNGC	8 cut(s)	104, 248, 419, 454, 556, 597, 627, 953
HpySE526I	ACGT	1 cut(s)	747
Hsp92II	CATG	6 cut(s)	236, 818, 875, 922, 940, 1013
HspAI	GCGC	1 cut(s)	240
Kzo9I	GATC	7 cut(s)	108, 286, 330, 383, 507, 520, 643
LguI	GCTCTTC	6 cut(s)	345, 436, 475, 566, 573, 607
LmnI	GCTCC	3 cut(s)	321, 462, 731
Lsp1109I	GCAGC	6 cut(s)	431, 466, 477, 568, 639, 931
LweI	GCATC	2 cut(s)	123, 379
MaeI	CTAG	4 cut(s)	32, 122, 248, 1002
MaeII	ACGT	1 cut(s)	747
MaeIII	GTNAC	2 cut(s)	20, 1004
MalI	GATC	7 cut(s)	110, 288, 332, 385, 509, 522, 645
MboI	GATC	7 cut(s)	108, 286, 330, 383, 507, 520, 643
MluCI	AATT	4 cut(s)	92, 781, 994, 1014
MmeI	TCCRAC	1 cut(s)	910
MseI	TTAA	2 cut(s)	182, 899
MslI	CAYNNNNRTG	1 cut(s)	876
MspI	CCGG	2 cut(s)	12, 132
MspR9I	CCNGG	2 cut(s)	12, 191
Mva1269I	GAATGC	2 cut(s)	5, 220
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	8 cut(s)	104, 248, 419, 454, 556, 597, 627, 953
NciI	CCSGG	1 cut(s)	12
NdeI	CATATG	1 cut(s)	958
NdeII	GATC	7 cut(s)	108, 286, 330, 383, 507, 520, 643
NlaIII	CATG	6 cut(s)	236, 818, 875, 922, 940, 1013
NlaIV	GGNNCC	1 cut(s)	840
NmuCI	GTSAC	1 cut(s)	1004
PciSI	GCTCTTC	6 cut(s)	345, 436, 475, 566, 573, 607
PcsI	WCGNNNNNNNCGW	3 cut(s)	282, 379, 516
PctI	GAATGC	2 cut(s)	5, 220
PfeI	GAWTC	7 cut(s)	229, 265, 278, 375, 512, 831, 933
PkrI	GCNGC	6 cut(s)	421, 456, 467, 558, 629, 946
Ple19I	CGATCG	1 cut(s)	646
Psp1406I	AACGTT	1 cut(s)	747
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspN4I	GGNNCC	1 cut(s)	840
PspPI	GGNCC	1 cut(s)	187
PvuI	CGATCG	1 cut(s)	646
RsaI	GTAC	3 cut(s)	209, 611, 715
RsaNI	GTAC	3 cut(s)	208, 610, 714
RseI	CAYNNNNRTG	1 cut(s)	876
SalI	GTCGAC	1 cut(s)	762
SapI	GCTCTTC	6 cut(s)	345, 436, 475, 566, 573, 607
SaqAI	TTAA	2 cut(s)	182, 899
SatI	GCNGC	6 cut(s)	420, 455, 466, 557, 628, 945
Sau3AI	GATC	7 cut(s)	108, 286, 330, 383, 507, 520, 643
Sau96I	GGNCC	1 cut(s)	187
ScrFI	CCNGG	2 cut(s)	12, 191
SfaNI	GCATC	2 cut(s)	123, 379
SmiMI	CAYNNNNRTG	1 cut(s)	876
SmlI	CTYRAG	1 cut(s)	655
SmoI	CTYRAG	1 cut(s)	655
SpeI	ACTAGT	1 cut(s)	1001
Sse9I	AATT	4 cut(s)	92, 781, 994, 1014
SspMI	CTAG	4 cut(s)	32, 122, 248, 1002
StyD4I	CCNGG	2 cut(s)	10, 189
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	853
TaiI	ACGT	1 cut(s)	750
TaqII	GACCGA	1 cut(s)	559
TasI	AATT	4 cut(s)	92, 781, 994, 1014
TfiI	GAWTC	7 cut(s)	229, 265, 278, 375, 512, 831, 933
Tru1I	TTAA	2 cut(s)	182, 899
Tru9I	TTAA	2 cut(s)	182, 899
TscAI	CASTG	1 cut(s)	883
TseFI	GTSAC	1 cut(s)	1004
TseI	GCWGC	6 cut(s)	419, 454, 465, 556, 627, 944
Tsp45I	GTSAC	1 cut(s)	1004
TspDTI	ATGAA	9 cut(s)	127, 221, 270, 367, 504, 803, 907, 925, 1026
TspGWI	ACGGA	2 cut(s)	718, 1017
TspRI	CASTG	1 cut(s)	883
XagI	CCTNNNNNAGG	1 cut(s)	30
XapI	RAATTY	1 cut(s)	1014
XcmI	CCANNNNNNNNNTGG	1 cut(s)	233
XmaJI	CCTAGG	1 cut(s)	121
XmiI	GTMKAC	1 cut(s)	763
XspI	CTAG	4 cut(s)	32, 122, 248, 1002

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.