Rmu_sc0001266.1_g000018

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001266.1
OG0003483
Physical Location & Seq
Reverse (-)
123502 .. 127000
3499 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001266.1_g000018.1.cds

Sequence Viewer

Length: 582 bp
atggcgatccgcgtctccctagggttttatggcttcgtggcccaaaacctagcctcctctgccaatattcatgtcagtaattgctacggcatccacaagtgctgggttaggtctctgctattcggcactaaccagattagtgtcttggatgtggggttcaatgtggtttttagcgacttaaagtcccaggtaacgctctttatctctaattataatgttattgtcttatcgtttccatgtagtttcattggaattgtcttgaacttggctgctgtcagatggattggtggtgttgagttagaaataattgcaatagctacaggtgatggtcataagaaacctataagcaaggccaaggtcatgaaggtgggattgatatttactgtcgaagcttctcttcatgcctcaaatgtgcaagttgttgatctagtaacagggagaccttgtaagggtggggttaaatatcttgaggatggaacaaaagttgagagtagcaagaggcacaggagcatcagtatctatagctatgaaaaagtgaagggcacaagaccttgtgattgcaggtttgatcactccatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

193

Amino Acids

21.11

Weight (kDa)

9.28

Isoelectric Point (pI)

26.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 213
Acc36I ACCTGC 1 cut(s) 552
AccII CGCG 1 cut(s) 12
AciI CCGC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 449
AgsI TTSAA 2 cut(s) 160, 262
AhdI GACNNNNNGTC 1 cut(s) 181
AjnI CCWGG 1 cut(s) 186
AloI GAACNNNNNNTCC 2 cut(s) 140, 172
AluBI AGCT 3 cut(s) 317, 392, 525
AluI AGCT 3 cut(s) 317, 392, 525
Alw26I GTCTC 3 cut(s) 19, 117, 433
AoxI GGCC 2 cut(s) 39, 351
ApeKI GCWGC 1 cut(s) 269
AspA2I CCTAGG 1 cut(s) 19
AspS9I GGNCC 1 cut(s) 40
AsuHPI GGTGA 1 cut(s) 335
AvrII CCTAGG 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 545
BbvI GCAGC 1 cut(s) 256
BccI CCATC 3 cut(s) 273, 320, 467
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 1 cut(s) 568
BcoDI GTCTC 3 cut(s) 19, 117, 433
BfaI CTAG 3 cut(s) 20, 50, 428
BfmI CTRYAG 2 cut(s) 318, 520
BfuAI ACCTGC 1 cut(s) 552
BisI GCNGC 1 cut(s) 270
BlnI CCTAGG 1 cut(s) 19
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 1 cut(s) 188
BmeRI GACNNNNNGTC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 40
BmrFI CCNGG 1 cut(s) 188
BmsI GCATC 2 cut(s) 99, 519
BpuEI CTTGAG 1 cut(s) 488
BsaI GGTCTC 2 cut(s) 117, 433
BsaJI CCNNGG 3 cut(s) 19, 186, 354
BsaXI ACNNNNNCTCC 6 cut(s) 38, 68, 430, 460, 499, 529
Bsc4I CCNNNNNNNGG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 188
BseDI CCNNGG 3 cut(s) 19, 186, 354
BseGI GGATG 3 cut(s) 90, 154, 478
BseLI CCNNNNNNNGG 1 cut(s) 449
BseRI GAGGAG 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 545
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 102
Bsh1236I CGCG 1 cut(s) 12
BshFI GGCC 2 cut(s) 41, 353
BslFI GGGAC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 449
BsmAI GTCTC 3 cut(s) 19, 117, 433
BsmBI CGTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 2 cut(s) 41, 353
Bso31I GGTCTC 2 cut(s) 117, 433
Bsp1286I GDGCHC 1 cut(s) 545
Bsp143I GATC 3 cut(s) 6, 424, 568
BspACI CCGC 1 cut(s) 10
BspANI GGCC 2 cut(s) 41, 353
BspFNI CGCG 1 cut(s) 12
BspHI TCATGA 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 552
BspTNI GGTCTC 2 cut(s) 117, 433
BssECI CCNNGG 3 cut(s) 19, 186, 354
BssMI GATC 3 cut(s) 6, 424, 568
BssT1I CCWWGG 2 cut(s) 19, 354
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 1 cut(s) 385
Bst6I CTCTTC 1 cut(s) 402
BstF5I GGATG 3 cut(s) 90, 154, 478
BstFNI CGCG 1 cut(s) 12
BstKTI GATC 3 cut(s) 9, 427, 571
BstMAI GTCTC 3 cut(s) 19, 117, 433
BstMBI GATC 3 cut(s) 6, 424, 568
BstMWI GCNNNNNNNGC 1 cut(s) 59
BstNI CCWGG 1 cut(s) 188
BstSCI CCNGG 1 cut(s) 186
BstSFI CTRYAG 2 cut(s) 318, 520
BstSLI GKGCMC 1 cut(s) 545
BstUI CGCG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 256
BsuRI GGCC 2 cut(s) 41, 353
BtsCI GGATG 3 cut(s) 90, 154, 478
BveI ACCTGC 1 cut(s) 552
CciI TCATGA 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 40
CviAII CATG 4 cut(s) 71, 237, 361, 401
CviJI RGCY 8 cut(s) 33, 41, 53, 269, 317, 353, 392, 525
CviKI_1 RGCY 8 cut(s) 33, 41, 53, 269, 317, 353, 392, 525
DpnI GATC 3 cut(s) 8, 426, 570
DpnII GATC 3 cut(s) 6, 424, 568
DriI GACNNNNNGTC 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 402
Eam1105I GACNNNNNGTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 402
Eco130I CCWWGG 2 cut(s) 19, 354
Eco31I GGTCTC 2 cut(s) 117, 433
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 2 cut(s) 19, 354
ErhI CCWWGG 2 cut(s) 19, 354
Esp3I CGTCTC 1 cut(s) 19
FaeI CATG 4 cut(s) 74, 240, 364, 404
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FaqI GGGAC 1 cut(s) 169
FatI CATG 4 cut(s) 70, 236, 360, 400
FbaI TGATCA 1 cut(s) 568
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 3 cut(s) 77, 161, 485
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 3 cut(s) 20, 50, 428
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 106
HaeIII GGCC 2 cut(s) 41, 353
Hin1II CATG 4 cut(s) 74, 240, 364, 404
HindIII AAGCTT 1 cut(s) 390
HphI GGTGA 1 cut(s) 335
Hpy188I TCNGA 1 cut(s) 278
Hpy188III TCNNGA 3 cut(s) 259, 361, 467
HpyAV CCTTC 2 cut(s) 358, 532
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 3 cut(s) 311, 415, 561
HpyF10VI GCNNNNNNNGC 1 cut(s) 59
Hsp92II CATG 4 cut(s) 74, 240, 364, 404
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 3 cut(s) 6, 424, 568
LmnI GCTCC 1 cut(s) 507
LpnPI CCDG 8 cut(s) 88, 146, 173, 200, 306, 420, 490, 547
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 99, 519
MaeI CTAG 3 cut(s) 20, 50, 428
MaeIII GTNAC 2 cut(s) 190, 430
MalI GATC 3 cut(s) 8, 426, 570
MboI GATC 3 cut(s) 6, 424, 568
MboII GAAGA 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 545
MluCI AATT 4 cut(s) 79, 208, 252, 306
MnlI CCTC 5 cut(s) 64, 67, 415, 463, 492
MseI TTAA 2 cut(s) 179, 459
MslI CAYNNNNRTG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 188
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 59
NdeII GATC 3 cut(s) 6, 424, 568
NlaIII CATG 4 cut(s) 74, 240, 364, 404
PagI TCATGA 1 cut(s) 360
PkrI GCNGC 1 cut(s) 271
PsiI TTATAA 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 102
PspGI CCWGG 1 cut(s) 186
PspPI GGNCC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 2 cut(s) 179, 459
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 6, 424, 568
Sau96I GGNCC 1 cut(s) 40
ScrFI CCNGG 1 cut(s) 188
SduI GDGCHC 1 cut(s) 545
SfaNI GCATC 2 cut(s) 99, 519
SfcI CTRYAG 2 cut(s) 318, 520
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 1 cut(s) 467
SmoI CTYRAG 1 cut(s) 467
Sse9I AATT 4 cut(s) 79, 208, 252, 306
SsiI CCGC 1 cut(s) 10
SspI AATATT 1 cut(s) 67
SspMI CTAG 3 cut(s) 20, 50, 428
StyD4I CCNGG 1 cut(s) 186
StyI CCWWGG 2 cut(s) 19, 354
TaaI ACNGT 1 cut(s) 385
TaqI TCGA 1 cut(s) 387
TasI AATT 4 cut(s) 79, 208, 252, 306
Tru1I TTAA 2 cut(s) 179, 459
Tru9I TTAA 2 cut(s) 179, 459
TseI GCWGC 1 cut(s) 269
TspDTI ATGAA 5 cut(s) 59, 235, 377, 389, 543
XmaJI CCTAGG 1 cut(s) 19
XspI CTAG 3 cut(s) 20, 50, 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.