Rh3CG367000

CCR4-NOT transcription complex subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0003483
Physical Location & Seq
Forward (+)
46326940 .. 46361272
34333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG367000.1

Sequence Viewer

Length: 588 bp
ATGCTCTCTTCTTCTTCAATCAATCTCATCACCCCCTTTCAAACCCCAACCCTAAAATCTTCTTCCCCCAGCAATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCGAATTCTCCTAAATCGCTGCCGAATTCTCCCACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCACCGCTGGCAGCTCAAGTACCTCTCCCAGCTAGAGAGTTGGAAGCTCTGGTGACTAACGATGCTAGAGAATCAGAAATCCAGGGAGTCATTGGTGAAGTGCCTGATATTATACTCAGATGTGTTAGTCGAGATGAGGCCGCCTTGGCTGTGGCTCAAAAGGTTTTCAAGGGTTTGTACGAGAATGCAACAAACCAGATTCATGTTGGTGCACATCTAGCAATGCTGACTGCGATTCGTGATGTTTGCAAGCTTGTCTTTACGCAGCTCACTAGTTGGGCTCGTCTTGAAATAAAAAAGCCAAGTAGAATTATTGATTGGTGTATAACAAGTCTTTGTTTACTTGGACTAGAGACATGGTGTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

195

Amino Acids

21.83

Weight (kDa)

9.74

Isoelectric Point (pI)

41.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ARM_Cnot1 PF25097 87 - 167 2.6e-14 Cnot1 ARM repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 224, 360
AcsI RAATTY 2 cut(s) 144, 165
AfaI GTAC 2 cut(s) 240, 398
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 4 cut(s) 18, 41, 388, 509
AhlI ACTAGT 1 cut(s) 491
AjnI CCWGG 2 cut(s) 211, 300
AjuI GAANNNNNNNTTGG 2 cut(s) 520, 552
AloI GAACNNNNNNTCC 2 cut(s) 99, 131
AluBI AGCT 6 cut(s) 184, 233, 251, 266, 472, 487
AluI AGCT 6 cut(s) 184, 233, 251, 266, 472, 487
Alw21I GWGCWC 1 cut(s) 433
Alw26I GTCTC 1 cut(s) 566
Alw44I GTGCAC 1 cut(s) 429
AoxI GGCC 3 cut(s) 76, 214, 357
ApaLI GTGCAC 1 cut(s) 429
ApeKI GCWGC 4 cut(s) 159, 181, 230, 484
ApoI RAATTY 2 cut(s) 144, 165
AspS9I GGNCC 2 cut(s) 190, 215
AsuHPI GGTGA 3 cut(s) 22, 283, 326
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 433
BanII GRGCYC 1 cut(s) 502
Bbv12I GWGCWC 1 cut(s) 433
BbvI GCAGC 4 cut(s) 146, 193, 242, 496
BceAI ACGGC 2 cut(s) 125, 194
BciT130I CCWGG 2 cut(s) 213, 302
BcoDI GTCTC 1 cut(s) 566
BcuI ACTAGT 1 cut(s) 491
BfaI CTAG 5 cut(s) 252, 285, 437, 492, 569
BglI GCCNNNNNGGC 1 cut(s) 365
BisI GCNGC 5 cut(s) 160, 182, 231, 360, 485
BlsI GCNGC 5 cut(s) 161, 183, 232, 361, 486
Bme1390I CCNGG 2 cut(s) 213, 302
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 190, 215
BmiI GGNNCC 1 cut(s) 191
BmrFI CCNGG 2 cut(s) 213, 302
BmsI GCATC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 301, 363
Bsc4I CCNNNNNNNGG 1 cut(s) 74
Bse3DI GCAATG 2 cut(s) 79, 447
BseBI CCWGG 2 cut(s) 213, 302
BseDI CCNNGG 2 cut(s) 301, 363
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMI GCAATG 2 cut(s) 79, 447
BseMII CTCAG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 71
BseSI GKGCMC 1 cut(s) 433
BseXI GCAGC 4 cut(s) 146, 193, 242, 496
BseYI CCCAGC 3 cut(s) 68, 217, 247
BshFI GGCC 3 cut(s) 78, 216, 359
BsiHKAI GWGCWC 1 cut(s) 433
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 566
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 3 cut(s) 78, 216, 359
Bsp1286I GDGCHC 2 cut(s) 433, 502
BspACI CCGC 2 cut(s) 224, 360
BspANI GGCC 3 cut(s) 78, 216, 359
BspCNI CTCAG 1 cut(s) 348
BspLI GGNNCC 1 cut(s) 191
BsrDI GCAATG 2 cut(s) 79, 447
BssECI CCNNGG 2 cut(s) 301, 363
BssT1I CCWWGG 1 cut(s) 363
Bst2UI CCWGG 2 cut(s) 213, 302
Bst6I CTCTTC 1 cut(s) 13
BstC8I GCNNGC 2 cut(s) 228, 470
BstDEI CTNAG 1 cut(s) 335
BstMAI GTCTC 1 cut(s) 566
BstMWI GCNNNNNNNGC 3 cut(s) 227, 365, 437
BstNI CCWGG 2 cut(s) 213, 302
BstSCI CCNGG 2 cut(s) 211, 300
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 4 cut(s) 146, 193, 242, 496
BsuRI GGCC 3 cut(s) 78, 216, 359
Cac8I GCNNGC 2 cut(s) 228, 470
Cfr13I GGNCC 2 cut(s) 190, 215
Csp6I GTAC 2 cut(s) 239, 397
CviAII CATG 2 cut(s) 422, 576
CviQI GTAC 2 cut(s) 239, 397
DdeI CTNAG 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 13
EarI CTCTTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 363
Eco24I GRGCYC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 190
EcoO109I RGGNCCY 1 cut(s) 190
EcoRI GAATTC 2 cut(s) 144, 165
EcoRII CCWGG 2 cut(s) 211, 300
EcoT14I CCWWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 502
ErhI CCWWGG 1 cut(s) 363
FaeI CATG 2 cut(s) 425, 579
FaiI YATR 4 cut(s) 332, 423, 545, 577
FalI AAGNNNNNCTT 2 cut(s) 461, 493
FatI CATG 2 cut(s) 421, 575
Fnu4HI GCNGC 5 cut(s) 160, 182, 231, 360, 485
FriOI GRGCYC 1 cut(s) 502
Fsp4HI GCNGC 5 cut(s) 160, 182, 231, 360, 485
FspBI CTAG 5 cut(s) 252, 285, 437, 492, 569
GluI GCNGC 5 cut(s) 160, 182, 231, 360, 485
GsaI CCCAGC 3 cut(s) 72, 221, 251
GsuI CTGGAG 1 cut(s) 195
HaeIII GGCC 3 cut(s) 78, 216, 359
Hin1II CATG 2 cut(s) 425, 579
HindIII AAGCTT 1 cut(s) 470
HinfI GANTC 6 cut(s) 114, 201, 290, 306, 418, 454
HphI GGTGA 3 cut(s) 22, 283, 326
Hpy166II GTNNAC 2 cut(s) 431, 560
Hpy188I TCNGA 2 cut(s) 295, 338
Hpy188III TCNNGA 3 cut(s) 350, 458, 506
Hpy8I GTNNAC 2 cut(s) 431, 560
HpyCH4V TGCA 3 cut(s) 407, 431, 468
HpyF10VI GCNNNNNNNGC 3 cut(s) 227, 365, 437
HpyF3I CTNAG 1 cut(s) 335
Hsp92II CATG 2 cut(s) 425, 579
Lsp1109I GCAGC 4 cut(s) 146, 193, 242, 496
LweI GCATC 1 cut(s) 271
MaeI CTAG 5 cut(s) 252, 285, 437, 492, 569
MaeIII GTNAC 1 cut(s) 271
MboII GAAGA 4 cut(s) 3, 6, 51, 54
MhlI GDGCHC 2 cut(s) 433, 502
MluCI AATT 3 cut(s) 144, 165, 528
MlyI GAGTC 2 cut(s) 195, 315
MmeI TCCRAC 2 cut(s) 142, 240
MnlI CCTC 6 cut(s) 89, 92, 140, 219, 252, 349
MslI CAYNNNNRTG 1 cut(s) 426
MspA1I CMGCKG 1 cut(s) 226
MspR9I CCNGG 2 cut(s) 213, 302
Mva1269I GAATGC 1 cut(s) 409
MvaI CCWGG 2 cut(s) 213, 302
MwoI GCNNNNNNNGC 3 cut(s) 227, 365, 437
NlaIII CATG 2 cut(s) 425, 579
NlaIV GGNNCC 1 cut(s) 191
NmuCI GTSAC 1 cut(s) 271
PctI GAATGC 1 cut(s) 409
PfeI GAWTC 4 cut(s) 114, 290, 418, 454
PflFI GACNNNGTC 1 cut(s) 204
PkrI GCNGC 5 cut(s) 161, 183, 232, 361, 486
PleI GAGTC 2 cut(s) 195, 314
PpsI GAGTC 2 cut(s) 195, 314
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 211, 300
PspFI CCCAGC 3 cut(s) 68, 217, 247
PspGI CCWGG 2 cut(s) 211, 300
PspN4I GGNNCC 1 cut(s) 191
PspPI GGNCC 2 cut(s) 190, 215
PspPPI RGGWCCY 1 cut(s) 190
PsyI GACNNNGTC 1 cut(s) 204
RsaI GTAC 2 cut(s) 240, 398
RsaNI GTAC 2 cut(s) 239, 397
RseI CAYNNNNRTG 1 cut(s) 426
SatI GCNGC 5 cut(s) 160, 182, 231, 360, 485
Sau96I GGNCC 2 cut(s) 190, 215
SchI GAGTC 2 cut(s) 195, 315
ScrFI CCNGG 2 cut(s) 213, 302
SduI GDGCHC 2 cut(s) 433, 502
SetI ASST 8 cut(s) 186, 235, 244, 253, 268, 384, 474, 489
SfaNI GCATC 1 cut(s) 271
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 426
SmlI CTYRAG 1 cut(s) 234
SmoI CTYRAG 1 cut(s) 234
SpeI ACTAGT 1 cut(s) 491
Sse9I AATT 3 cut(s) 144, 165, 528
SsiI CCGC 2 cut(s) 224, 360
SspMI CTAG 5 cut(s) 252, 285, 437, 492, 569
StyD4I CCNGG 2 cut(s) 211, 300
StyI CCWWGG 1 cut(s) 363
TaqI TCGA 1 cut(s) 349
TasI AATT 3 cut(s) 144, 165, 528
TauI GCSGC 1 cut(s) 362
TfiI GAWTC 4 cut(s) 114, 290, 418, 454
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 4 cut(s) 159, 181, 230, 484
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 1 cut(s) 410
TspGWI ACGGA 1 cut(s) 194
Tth111I GACNNNGTC 1 cut(s) 204
VneI GTGCAC 1 cut(s) 429
VpaK11BI GGWCC 1 cut(s) 190
XapI RAATTY 2 cut(s) 144, 165
XcmI CCANNNNNNNNNTGG 2 cut(s) 308, 422
XspI CTAG 5 cut(s) 252, 285, 437, 492, 569
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.