Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Forward (+)

72485575 .. 72496830

Gene Structure 11256 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG546400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGCTTACCAAAACGGTCAAGCAACTGTGGCCTGAGCTCCCTTTCTTCTGGATATATTGCCAGAGCCAATCAAACGGTGATGGACCTAACAATTGTGCATTTCCCAGTACCCCTATCACCCTTGATCATGACACCCCCAATCTTGAGGATTTTGTTCTGCTTCCCTGGCAAAACCAATCTATTCAAAGTTCGCACGTTCTGCCAGTTGCTACCACAGCTTCATCTGGTAGTACTGGTCTCACTACCACATATGGTTCAGCATCCGGACAACTTAACACGGGCTACTCACCAGGACCTGGAAGCAAATTTGAAGCTGTTTCTCGTCCATTAGATGAAGTGATGGAATCCAATTCTGCCCTCCATCTTAGTGCTTCATCTATTCATGTTGGGGCGGCTGATGGTGTTTCCCAGCATAGTTCTGAAAATGATTTTGTTGTTGCCTCATTTCCTTCTGCTGCTTCTGCCCCTGAGCTGCACTCTGTAGAGTCATCTGATGCTGTAAAGGTTGACGAAACTTCTTTCATGATTGTAGGGTGGTTAAGTTTCATGTTTTCTTTGTTGCCCAAATTTTTATTTTGTTTCCAGGAATCTGGAGTGTCCTCACAGCCACCACCTTCACCTGCTGTAACTGAACGTCTTGGAAGTCTCTCAGAACCTTCCCTCACCACAGGGGCTGCATTGGAAAAATACCAGATTGTTGCACAGAAGTTGGAAGCTCTGGTGACTAACGATGCTAGAGAATCAGAAATCCAGGTTTTCAAGGGTTTGTACGAGAATGCAACAAACCAGATTCATGTTGGCGCACATCTAGCAATGCTGACTGCGATTCGTGATGTTTGCAAGCTTGTCTTTACGCAGCTCACTAGTTGGTTTGCATTAAAGATTCTTATTACAAAAAGGAGTACACCACTGATTCTTATTACAACTCCAAAAGTACACATGATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

315

Amino Acids

33.99

Weight (kDa)

5.2

Isoelectric Point (pI)

38.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	628
Acc36I	ACCTGC	1 cut(s)	628
AccB7I	CCANNNNNTGG	1 cut(s)	296
AccIII	TCCGGA	1 cut(s)	263
AciI	CCGC	1 cut(s)	392
AcsI	RAATTY	2 cut(s)	305, 566
AfaI	GTAC	5 cut(s)	109, 232, 770, 904, 936
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	185, 311, 760
AhlI	ACTAGT	1 cut(s)	863
AjnI	CCWGG	5 cut(s)	164, 289, 295, 582, 750
AluBI	AGCT	7 cut(s)	37, 218, 314, 472, 716, 844, 859
AluI	AGCT	7 cut(s)	37, 218, 314, 472, 716, 844, 859
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	2 cut(s)	242, 650
AlwNI	CAGNNNCTG	2 cut(s)	296, 674
Aor13HI	TCCGGA	1 cut(s)	263
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	4 cut(s)	455, 472, 674, 856
ApoI	RAATTY	2 cut(s)	305, 566
AspLEI	GCGC	1 cut(s)	803
AspS9I	GGNCC	2 cut(s)	83, 293
AsuHPI	GGTGA	6 cut(s)	89, 109, 279, 609, 655, 733
AvaII	GGWCC	2 cut(s)	83, 293
BanII	GRGCYC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	442, 459, 661, 868
BccI	CCATC	4 cut(s)	74, 334, 369, 392
BciT130I	CCWGG	5 cut(s)	166, 291, 297, 584, 752
BclI	TGATCA	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	242, 650
BcuI	ACTAGT	1 cut(s)	863
BfaI	CTAG	3 cut(s)	735, 809, 864
BfmI	CTRYAG	1 cut(s)	480
BfuAI	ACCTGC	1 cut(s)	628
BisI	GCNGC	5 cut(s)	393, 456, 473, 675, 857
BlsI	GCNGC	5 cut(s)	394, 457, 474, 676, 858
BmcAI	AGTACT	1 cut(s)	232
Bme1390I	CCNGG	5 cut(s)	166, 291, 297, 584, 752
Bme18I	GGWCC	2 cut(s)	83, 293
BmgT120I	GGNCC	2 cut(s)	83, 293
BmrFI	CCNGG	5 cut(s)	166, 291, 297, 584, 752
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	3 cut(s)	269, 484, 721
BmuI	ACTGGG	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	461, 493
BpmI	CTGGAG	1 cut(s)	612
Bpu10I	CCTNAGC	2 cut(s)	33, 468
BpuEI	CTTGAG	1 cut(s)	164
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse1I	ACTGG	3 cut(s)	105, 203, 238
Bse3DI	GCAATG	1 cut(s)	819
BseAI	TCCGGA	1 cut(s)	263
BseBI	CCWGG	5 cut(s)	166, 291, 297, 584, 752
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	260
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMI	GCAATG	1 cut(s)	819
BseMII	CTCAG	3 cut(s)	24, 459, 663
BseNI	ACTGG	3 cut(s)	105, 203, 238
BseXI	GCAGC	4 cut(s)	442, 459, 661, 868
BseYI	CCCAGC	1 cut(s)	408
BsgI	GTGCAG	1 cut(s)	458
BshFI	GGCC	1 cut(s)	31
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	264
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	2 cut(s)	242, 650
BsmI	GAATGC	1 cut(s)	781
BsnI	GGCC	1 cut(s)	31
Bso31I	GGTCTC	1 cut(s)	242
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp13I	TCCGGA	1 cut(s)	263
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	1 cut(s)	392
BspANI	GGCC	1 cut(s)	31
BspCNI	CTCAG	3 cut(s)	25, 460, 662
BspEI	TCCGGA	1 cut(s)	263
BspHI	TCATGA	2 cut(s)	127, 522
BspMI	ACCTGC	1 cut(s)	628
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	819
BsrI	ACTGG	3 cut(s)	105, 203, 238
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	5 cut(s)	166, 291, 297, 584, 752
Bst4CI	ACNGT	3 cut(s)	16, 27, 77
BstAPI	GCANNNNNTGC	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	842
BstDEI	CTNAG	4 cut(s)	33, 365, 468, 649
BstF5I	GGATG	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	803
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	2 cut(s)	242, 650
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	6 cut(s)	28, 166, 199, 215, 461, 809
BstNI	CCWGG	5 cut(s)	166, 291, 297, 584, 752
BstSCI	CCNGG	5 cut(s)	164, 289, 295, 582, 750
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	4 cut(s)	442, 459, 661, 868
BstXI	CCANNNNNNTGG	1 cut(s)	590
BsuRI	GGCC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	260
BtsIMutI	CAGTG	1 cut(s)	908
BveI	ACCTGC	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	842
CaiI	CAGNNNCTG	2 cut(s)	296, 674
CciI	TCATGA	2 cut(s)	127, 522
CfoI	GCGC	1 cut(s)	803
Cfr13I	GGNCC	2 cut(s)	83, 293
Csp6I	GTAC	5 cut(s)	108, 231, 769, 903, 935
CviAII	CATG	6 cut(s)	128, 383, 523, 547, 794, 940
CviQI	GTAC	5 cut(s)	108, 231, 769, 903, 935
DdeI	CTNAG	4 cut(s)	33, 365, 468, 649
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
Ecl136II	GAGCTC	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	39
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	2 cut(s)	83, 293
Eco53kI	GAGCTC	1 cut(s)	37
EcoICRI	GAGCTC	1 cut(s)	37
EcoO109I	RGGNCCY	1 cut(s)	293
EcoRII	CCWGG	5 cut(s)	164, 289, 295, 582, 750
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	6 cut(s)	131, 386, 526, 550, 797, 943
FalI	AAGNNNNNCTT	2 cut(s)	833, 865
FatI	CATG	6 cut(s)	127, 382, 522, 546, 793, 939
FauNDI	CATATG	1 cut(s)	250
FbaI	TGATCA	1 cut(s)	124
Fnu4HI	GCNGC	5 cut(s)	393, 456, 473, 675, 857
FokI	GGATG	1 cut(s)	247
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	5 cut(s)	393, 456, 473, 675, 857
FspBI	CTAG	3 cut(s)	735, 809, 864
GlaI	GCGC	1 cut(s)	802
GluI	GCNGC	5 cut(s)	393, 456, 473, 675, 857
GsaI	CCCAGC	1 cut(s)	412
GsuI	CTGGAG	1 cut(s)	612
HaeIII	GGCC	1 cut(s)	31
HapII	CCGG	1 cut(s)	264
HhaI	GCGC	1 cut(s)	803
Hin1II	CATG	6 cut(s)	131, 386, 526, 550, 797, 943
Hin6I	GCGC	1 cut(s)	801
HinP1I	GCGC	1 cut(s)	801
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	842
HinfI	GANTC	8 cut(s)	344, 485, 587, 740, 790, 826, 883, 913
HpaII	CCGG	1 cut(s)	264
HphI	GGTGA	6 cut(s)	89, 109, 279, 609, 655, 733
Hpy166II	GTNNAC	3 cut(s)	508, 905, 937
Hpy188I	TCNGA	4 cut(s)	421, 493, 652, 745
Hpy188III	TCNNGA	7 cut(s)	49, 128, 143, 264, 523, 591, 830
Hpy8I	GTNNAC	3 cut(s)	508, 905, 937
HpyAV	CCTTC	3 cut(s)	459, 624, 666
HpyCH4III	ACNGT	3 cut(s)	16, 27, 77
HpyCH4IV	ACGT	2 cut(s)	195, 634
HpyCH4V	TGCA	7 cut(s)	98, 475, 677, 701, 779, 840, 875
HpyF10VI	GCNNNNNNNGC	6 cut(s)	28, 166, 199, 215, 461, 809
HpyF3I	CTNAG	4 cut(s)	33, 365, 468, 649
HpySE526I	ACGT	2 cut(s)	195, 634
Hsp92II	CATG	6 cut(s)	131, 386, 526, 550, 797, 943
HspAI	GCGC	1 cut(s)	801
Kpn2I	TCCGGA	1 cut(s)	263
Ksp22I	TGATCA	1 cut(s)	124
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	42
Lsp1109I	GCAGC	4 cut(s)	442, 459, 661, 868
LweI	GCATC	3 cut(s)	269, 484, 721
MaeI	CTAG	3 cut(s)	735, 809, 864
MaeII	ACGT	2 cut(s)	195, 634
MaeIII	GTNAC	2 cut(s)	625, 721
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	1 cut(s)	37
MfeI	CAATTG	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	39
MluCI	AATT	4 cut(s)	91, 305, 349, 566
MlyI	GAGTC	1 cut(s)	494
MmeI	TCCRAC	1 cut(s)	690
MnlI	CCTC	5 cut(s)	139, 368, 451, 610, 671
MroI	TCCGGA	1 cut(s)	263
MseI	TTAA	3 cut(s)	273, 539, 878
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	1 cut(s)	264
MspR9I	CCNGG	5 cut(s)	166, 291, 297, 584, 752
MunI	CAATTG	1 cut(s)	91
Mva1269I	GAATGC	1 cut(s)	781
MvaI	CCWGG	5 cut(s)	166, 291, 297, 584, 752
MwoI	GCNNNNNNNGC	6 cut(s)	28, 166, 199, 215, 461, 809
NdeI	CATATG	1 cut(s)	250
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	6 cut(s)	131, 386, 526, 550, 797, 943
NmuCI	GTSAC	1 cut(s)	721
PagI	TCATGA	2 cut(s)	127, 522
PaqCI	CACCTGC	1 cut(s)	628
PctI	GAATGC	1 cut(s)	781
PfeI	GAWTC	7 cut(s)	344, 587, 740, 790, 826, 883, 913
PflMI	CCANNNNNTGG	1 cut(s)	296
PfoI	TCCNGGA	1 cut(s)	582
PkrI	GCNGC	5 cut(s)	394, 457, 474, 676, 858
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PpuMI	RGGWCCY	1 cut(s)	293
Psp124BI	GAGCTC	1 cut(s)	39
Psp5II	RGGWCCY	1 cut(s)	293
Psp6I	CCWGG	5 cut(s)	164, 289, 295, 582, 750
PspFI	CCCAGC	1 cut(s)	408
PspGI	CCWGG	5 cut(s)	164, 289, 295, 582, 750
PspPI	GGNCC	2 cut(s)	83, 293
PspPPI	RGGWCCY	1 cut(s)	293
PstNI	CAGNNNCTG	2 cut(s)	296, 674
RsaI	GTAC	5 cut(s)	109, 232, 770, 904, 936
RsaNI	GTAC	5 cut(s)	108, 231, 769, 903, 935
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	39
SaqAI	TTAA	3 cut(s)	273, 539, 878
SatI	GCNGC	5 cut(s)	393, 456, 473, 675, 857
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	2 cut(s)	83, 293
ScaI	AGTACT	1 cut(s)	232
SchI	GAGTC	1 cut(s)	494
ScrFI	CCNGG	5 cut(s)	166, 291, 297, 584, 752
SduI	GDGCHC	1 cut(s)	39
SfaNI	GCATC	3 cut(s)	269, 484, 721
SfcI	CTRYAG	1 cut(s)	480
SinI	GGWCC	2 cut(s)	83, 293
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	143
SmoI	CTYRAG	1 cut(s)	143
SpeI	ACTAGT	1 cut(s)	863
Sse9I	AATT	4 cut(s)	91, 305, 349, 566
SsiI	CCGC	1 cut(s)	392
SspMI	CTAG	3 cut(s)	735, 809, 864
SstI	GAGCTC	1 cut(s)	39
StyD4I	CCNGG	5 cut(s)	164, 289, 295, 582, 750
TaaI	ACNGT	3 cut(s)	16, 27, 77
TaiI	ACGT	2 cut(s)	198, 637
TasI	AATT	4 cut(s)	91, 305, 349, 566
TatI	WGTACW	3 cut(s)	230, 902, 934
TauI	GCSGC	1 cut(s)	395
TfiI	GAWTC	7 cut(s)	344, 587, 740, 790, 826, 883, 913
Tru1I	TTAA	3 cut(s)	273, 539, 878
Tru9I	TTAA	3 cut(s)	273, 539, 878
TscAI	CASTG	1 cut(s)	915
TseFI	GTSAC	1 cut(s)	721
TseI	GCWGC	4 cut(s)	455, 472, 674, 856
Tsp45I	GTSAC	1 cut(s)	721
TspDTI	ATGAA	7 cut(s)	210, 348, 363, 371, 511, 535, 782
TspRI	CASTG	1 cut(s)	915
Van91I	CCANNNNNTGG	1 cut(s)	296
VpaK11BI	GGWCC	2 cut(s)	83, 293
XapI	RAATTY	2 cut(s)	305, 566
XcmI	CCANNNNNNNNNTGG	1 cut(s)	794
XspI	CTAG	3 cut(s)	735, 809, 864
ZrmI	AGTACT	1 cut(s)	232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.