Rmu_sc0004465.1_g000027

Belongs to the universal ribosomal protein uL24 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004465.1
OG0003483
Physical Location & Seq
Forward (+)
113612 .. 119082
5471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004465.1_g000027.1.cds

Sequence Viewer

Length: 399 bp
atgttgctgtcgccagtgagctttggcgacggcaaaatcgctgatggcgtcgcaattatgccgtcgccaaaaatcatgcgacggcgtaaataccgtggccaaaattcatgcgacggcataattgccgtcgcaaatagcaatggcgacgccaccaacgacatcggtgatggtcataagaaacatataagcaaggccaaggtcatgaaggtgggatcaatatttactatcgaagctcctcttcatgcctcaaatgtgcaagttgttgatccagtaacagggagaccgtgtaagggttcggttaaatatcttgaggatggaacaaaagttaagagtagcaagaggcacaggagcatcaggatctatagctatgaaaaaagtgaagggcacaagaccttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
KOW ribosomal_L24

Protein Analysis

132

Amino Acids

14.34

Weight (kDa)

9.88

Isoelectric Point (pI)

45.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 220, 260, 365
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 103
AcyI GRCGYC 2 cut(s) 48, 147
AfiI CCNNNNNNNGG 2 cut(s) 275, 290
AluBI AGCT 3 cut(s) 21, 233, 366
AluI AGCT 3 cut(s) 21, 233, 366
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 3 cut(s) 220, 260, 365
AoxI GGCC 2 cut(s) 97, 192
ApoI RAATTY 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 176
BaeGI GKGCMC 1 cut(s) 387
BalI TGGCCA 1 cut(s) 99
BccI CCATC 3 cut(s) 38, 161, 308
BceAI ACGGC 5 cut(s) 46, 46, 98, 110, 130
BcoDI GTCTC 1 cut(s) 274
BfmI CTRYAG 1 cut(s) 361
BmsI GCATC 1 cut(s) 360
BpuEI CTTGAG 1 cut(s) 329
BsaHI GRCGYC 2 cut(s) 48, 147
BsaI GGTCTC 1 cut(s) 274
BsaJI CCNNGG 2 cut(s) 94, 195
BsaXI ACNNNNNCTCC 2 cut(s) 271, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 275, 290
Bse1I ACTGG 2 cut(s) 14, 269
Bse3DI GCAATG 1 cut(s) 145
BseDI CCNNGG 2 cut(s) 94, 195
BseGI GGATG 1 cut(s) 319
BseLI CCNNNNNNNGG 2 cut(s) 275, 290
BseMI GCAATG 1 cut(s) 145
BseNI ACTGG 2 cut(s) 14, 269
BseRI GAGGAG 1 cut(s) 225
BseSI GKGCMC 1 cut(s) 387
BshFI GGCC 2 cut(s) 99, 194
BslI CCNNNNNNNGG 2 cut(s) 275, 290
BsmAI GTCTC 1 cut(s) 274
BsnI GGCC 2 cut(s) 99, 194
Bso31I GGTCTC 1 cut(s) 274
Bsp1286I GDGCHC 1 cut(s) 387
Bsp143I GATC 3 cut(s) 212, 265, 357
BspANI GGCC 2 cut(s) 99, 194
BspHI TCATGA 1 cut(s) 201
BspPI GGATC 3 cut(s) 220, 260, 365
BspTNI GGTCTC 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 145
BsrI ACTGG 2 cut(s) 14, 269
BssECI CCNNGG 2 cut(s) 94, 195
BssMI GATC 3 cut(s) 212, 265, 357
BssNI GRCGYC 2 cut(s) 48, 147
BssT1I CCWWGG 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 95, 285
Bst6I CTCTTC 1 cut(s) 243
BstACI GRCGYC 2 cut(s) 48, 147
BstDSI CCRYGG 1 cut(s) 94
BstF5I GGATG 1 cut(s) 319
BstKTI GATC 3 cut(s) 215, 268, 360
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 3 cut(s) 212, 265, 357
BstSFI CTRYAG 1 cut(s) 361
BstSLI GKGCMC 1 cut(s) 387
BstX2I RGATCY 1 cut(s) 357
BstYI RGATCY 1 cut(s) 357
BsuRI GGCC 2 cut(s) 99, 194
BtgI CCRYGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 319
BtsIMutI CAGTG 1 cut(s) 21
CciI TCATGA 1 cut(s) 201
CseI GACGC 2 cut(s) 37, 155
CviAII CATG 4 cut(s) 76, 108, 202, 242
CviJI RGCY 5 cut(s) 21, 99, 194, 233, 366
CviKI_1 RGCY 5 cut(s) 21, 99, 194, 233, 366
DpnI GATC 3 cut(s) 214, 267, 359
DpnII GATC 3 cut(s) 212, 265, 357
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 195
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 4 cut(s) 79, 111, 205, 245
FalI AAGNNNNNCTT 2 cut(s) 222, 254
FatI CATG 4 cut(s) 75, 107, 201, 241
FokI GGATG 1 cut(s) 326
HaeIII GGCC 2 cut(s) 99, 194
HgaI GACGC 2 cut(s) 37, 155
Hin1I GRCGYC 2 cut(s) 48, 147
Hin1II CATG 4 cut(s) 79, 111, 205, 245
HphI GGTGA 1 cut(s) 176
Hpy188III TCNNGA 3 cut(s) 202, 308, 355
Hpy99I CGWCG 7 cut(s) 32, 53, 67, 84, 116, 131, 149
HpyAV CCTTC 2 cut(s) 199, 374
HpyCH4III ACNGT 2 cut(s) 95, 285
HpyCH4V TGCA 1 cut(s) 256
Hsp92I GRCGYC 2 cut(s) 48, 147
Hsp92II CATG 4 cut(s) 79, 111, 205, 245
Kzo9I GATC 3 cut(s) 212, 265, 357
LmnI GCTCC 2 cut(s) 238, 348
LpnPI CCDG 5 cut(s) 27, 261, 282, 331, 340
LweI GCATC 1 cut(s) 360
MaeIII GTNAC 1 cut(s) 271
MalI GATC 3 cut(s) 214, 267, 359
MboI GATC 3 cut(s) 212, 265, 357
MboII GAAGA 1 cut(s) 230
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 1 cut(s) 387
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 3 cut(s) 54, 103, 120
MluNI TGGCCA 1 cut(s) 99
MnlI CCTC 4 cut(s) 246, 256, 304, 333
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 300, 327
MslI CAYNNNNRTG 1 cut(s) 206
Msp20I TGGCCA 1 cut(s) 99
NdeII GATC 3 cut(s) 212, 265, 357
NlaIII CATG 4 cut(s) 79, 111, 205, 245
PagI TCATGA 1 cut(s) 201
PcsI WCGNNNNNNNCGW 2 cut(s) 45, 153
PsuI RGATCY 1 cut(s) 357
RseI CAYNNNNRTG 1 cut(s) 206
SaqAI TTAA 2 cut(s) 300, 327
Sau3AI GATC 3 cut(s) 212, 265, 357
SduI GDGCHC 1 cut(s) 387
SetI ASST 6 cut(s) 23, 201, 210, 235, 368, 395
SfaNI GCATC 1 cut(s) 360
SfcI CTRYAG 1 cut(s) 361
SmiMI CAYNNNNRTG 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
Sse9I AATT 3 cut(s) 54, 103, 120
SspI AATATT 1 cut(s) 219
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 95, 285
TaqI TCGA 1 cut(s) 228
TasI AATT 3 cut(s) 54, 103, 120
Tru1I TTAA 2 cut(s) 300, 327
Tru9I TTAA 2 cut(s) 300, 327
TscAI CASTG 1 cut(s) 21
TspDTI ATGAA 4 cut(s) 96, 218, 230, 384
TspRI CASTG 1 cut(s) 21
XapI RAATTY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.