Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018213.1

Orthogroup ID

OG0003483

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 2120

Gene Structure 2119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018213.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 905 bp

atgtatgtaacattacccaaattgggttggcactctttatcctcttctattttgagaggggggatcggagaaggggacaaaggcattgcacagccaaacacttcattggaagctctggtgactaacgatgctagagaatcagaaatccagggagtcattggtgaagtgcctgatattatactcagatgtgttagtcgagatgaggccgccttggctgtggctcaaaaggttttcaagggtttgtacgagaatgcaacaaaccagattcatgttggcgcacatctagcaatgctgactgcgattcgtgatgtttgcaagcttgtctttacgcagctcaatagttgggtgatttattctgatgaggagcggaagtttaataaagaaattactgttggccttatacgcagtgaactgctaaaccttgcagagtacaatgttcacatggcaaaacttattgatggtggcaggaataagccagcaacagagttcgccacttccttgctccaaactttggttattgaagaatctaaagttatctcagaacttcagagtcttgttgatgcaatgggaaaggctgctgcgaagcctggatctcccgagtcactgcagcaggtggttgaaattgtcaagaatcctgctgctaatggagctgctccatctggtgttaatgttgggaaggatgacaaggccagacaatcgagagagaaaaaggcttctgttcactccccagtaagcagggaagagttcagtattgtggagcctgcggaaccagatcctcctggttttcgtgagcaggtgtctatgctgtttgctgagtggtaccggatttgtgaacttcctggtgcaaacgaaaatagttgtgcccatttaatcgtacagttgcgctcaagtggcatgctgaaggg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03018 map03018

Pfam Domains

Protein Families

CNOT1_CAF1_bind CNOT1_HEAT CNOT1_TTP_bind DUF3819 Not1

Protein Analysis

302

Amino Acids

32.79

Weight (kDa)

5.64

Isoelectric Point (pI)

42.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003483)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0344821 RchiOBHm_Chr1g0344831 RchiOBHm_Chr3g0471831 RchiOBHm_Chr5g0080341 RchiOBHm_Chr7g0235701
rosa_multiflora	Rmu_sc0000079.1_g000003 Rmu_sc0000322.1_g000042 Rmu_sc0001266.1_g000018 Rmu_sc0003941.1_g000012 Rmu_sc0004465.1_g000027 Rmu_sc0005738.1_g000015 Rmu_sc0016401.1_g000001 Rmu_sc0018213.1_g000001
rosa_roxburghii	Rroxscaffold_3G00233470 Rroxscaffold_3G00234220
rosa_samantha	Rh2BG430200 Rh2CG546400 Rh2DG440200 Rh3CG281000 Rh3CG281100 Rh3CG367000 Rh3DG277100 Rh3DG297300 Rh3DG342900 Rh3DG365000 Rh4AG049800 Rh4CG237300 Rh4CG237800 Rh4DG160500 Rh5CG565500 Rh5DG412600 Rh6BG298900 Rh7DG372800 Rh7DG372900
rosa_wichuraiana	Rw3G022420 Rw4G018200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	601, 784
Acc36I	ACCTGC	2 cut(s)	601, 784
Acc65I	GGTACC	1 cut(s)	819
AccB1I	GGYRCC	1 cut(s)	819
AccB7I	CCANNNNNTGG	1 cut(s)	511
AccBSI	CCGCTC	1 cut(s)	367
AciI	CCGC	3 cut(s)	207, 367, 764
AclWI	GGATC	3 cut(s)	71, 598, 767
AcuI	CTGAAG	1 cut(s)	530
AfaI	GTAC	4 cut(s)	245, 431, 821, 876
AfiI	CCNNNNNNNGG	2 cut(s)	23, 511
AgsI	TTSAA	3 cut(s)	235, 521, 620
AjnI	CCWGG	4 cut(s)	147, 586, 778, 838
AjuI	GAANNNNNNNTTGG	2 cut(s)	375, 407
AluBI	AGCT	4 cut(s)	113, 319, 334, 650
AluI	AGCT	4 cut(s)	113, 319, 334, 650
AlwI	GGATC	3 cut(s)	71, 598, 767
Ama87I	CYCGRG	1 cut(s)	596
AoxI	GGCC	3 cut(s)	204, 394, 687
ApeKI	GCWGC	6 cut(s)	331, 575, 578, 607, 638, 650
Asp718I	GGTACC	1 cut(s)	819
AspLEI	GCGC	2 cut(s)	278, 885
AsuHPI	GGTGA	3 cut(s)	130, 173, 358
AvaI	CYCGRG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	865
BanI	GGYRCC	1 cut(s)	819
BbvI	GCAGC	6 cut(s)	343, 562, 565, 619, 625, 637
BccI	CCATC	2 cut(s)	452, 664
BciT130I	CCWGG	4 cut(s)	149, 588, 780, 840
BfaI	CTAG	2 cut(s)	132, 284
BfmI	CTRYAG	1 cut(s)	605
BfuAI	ACCTGC	2 cut(s)	601, 784
BglI	GCCNNNNNGGC	1 cut(s)	212
BisI	GCNGC	7 cut(s)	207, 332, 576, 579, 608, 639, 651
BlsI	GCNGC	7 cut(s)	208, 333, 577, 580, 609, 640, 652
Bme1390I	CCNGG	4 cut(s)	149, 588, 780, 840
BmeT110I	CYCGRG	1 cut(s)	596
BmiI	GGNNCC	3 cut(s)	759, 768, 821
BmrFI	CCNGG	4 cut(s)	149, 588, 780, 840
BmrI	ACTGGG	1 cut(s)	722
BmsI	GCATC	2 cut(s)	118, 550
BmuI	ACTGGG	1 cut(s)	722
BpuEI	CTTGAG	1 cut(s)	871
BsaJI	CCNNGG	2 cut(s)	148, 210
BsaWI	WCCGGW	1 cut(s)	822
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 511
Bse1I	ACTGG	1 cut(s)	728
Bse3DI	GCAATG	3 cut(s)	84, 294, 570
BseBI	CCWGG	4 cut(s)	149, 588, 780, 840
BseDI	CCNNGG	2 cut(s)	148, 210
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	2 cut(s)	23, 511
BseMI	GCAATG	3 cut(s)	84, 294, 570
BseMII	CTCAG	3 cut(s)	196, 552, 804
BseNI	ACTGG	1 cut(s)	728
BseRI	GAGGAG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	865
BseXI	GCAGC	6 cut(s)	343, 562, 565, 619, 625, 637
BshFI	GGCC	3 cut(s)	206, 396, 689
BshNI	GGYRCC	1 cut(s)	819
BsiHKCI	CYCGRG	1 cut(s)	596
BsiSI	CCGG	1 cut(s)	823
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	23, 511
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	1 cut(s)	256
BsnI	GGCC	3 cut(s)	206, 396, 689
BsoBI	CYCGRG	1 cut(s)	596
Bsp1286I	GDGCHC	1 cut(s)	865
Bsp143I	GATC	3 cut(s)	63, 590, 772
BspACI	CCGC	3 cut(s)	207, 367, 764
BspANI	GGCC	3 cut(s)	206, 396, 689
BspCNI	CTCAG	3 cut(s)	195, 551, 805
BspLI	GGNNCC	3 cut(s)	759, 768, 821
BspMAI	CTGCAG	1 cut(s)	609
BspMI	ACCTGC	2 cut(s)	601, 784
BspPI	GGATC	3 cut(s)	71, 598, 767
BspT107I	GGYRCC	1 cut(s)	819
BsrBI	CCGCTC	1 cut(s)	367
BsrDI	GCAATG	3 cut(s)	84, 294, 570
BsrI	ACTGG	1 cut(s)	728
BssECI	CCNNGG	2 cut(s)	148, 210
BssMI	GATC	3 cut(s)	63, 590, 772
BssT1I	CCWWGG	1 cut(s)	210
Bst2UI	CCWGG	4 cut(s)	149, 588, 780, 840
Bst4CI	ACNGT	2 cut(s)	391, 879
Bst6I	CTCTTC	2 cut(s)	49, 735
BstC8I	GCNNGC	4 cut(s)	317, 477, 762, 896
BstDEI	CTNAG	3 cut(s)	182, 538, 813
BstF5I	GGATG	1 cut(s)	685
BstHHI	GCGC	2 cut(s)	278, 885
BstKTI	GATC	3 cut(s)	66, 593, 775
BstMBI	GATC	3 cut(s)	63, 590, 772
BstMWI	GCNNNNNNNGC	5 cut(s)	212, 284, 402, 647, 891
BstNI	CCWGG	4 cut(s)	149, 588, 780, 840
BstNSI	RCATGY	1 cut(s)	898
BstSCI	CCNGG	4 cut(s)	147, 586, 778, 838
BstSFI	CTRYAG	1 cut(s)	605
BstSLI	GKGCMC	1 cut(s)	865
BstV1I	GCAGC	6 cut(s)	343, 562, 565, 619, 625, 637
BstX2I	RGATCY	2 cut(s)	590, 772
BstYI	RGATCY	2 cut(s)	590, 772
BsuRI	GGCC	3 cut(s)	206, 396, 689
BtsCI	GGATG	1 cut(s)	685
BtsI	GCAGTG	2 cut(s)	412, 602
BtsIMutI	CAGTG	2 cut(s)	412, 602
BveI	ACCTGC	2 cut(s)	601, 784
Cac8I	GCNNGC	4 cut(s)	317, 477, 762, 896
CfoI	GCGC	2 cut(s)	278, 885
Csp6I	GTAC	4 cut(s)	244, 430, 820, 875
CviAII	CATG	3 cut(s)	269, 442, 895
CviQI	GTAC	4 cut(s)	244, 430, 820, 875
DdeI	CTNAG	3 cut(s)	182, 538, 813
DpnI	GATC	3 cut(s)	65, 592, 774
DpnII	GATC	3 cut(s)	63, 590, 772
Eam1104I	CTCTTC	2 cut(s)	49, 735
EarI	CTCTTC	2 cut(s)	49, 735
Eco130I	CCWWGG	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	596
EcoRII	CCWGG	4 cut(s)	147, 586, 778, 838
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
FaeI	CATG	3 cut(s)	272, 445, 898
FaiI	YATR	7 cut(s)	6, 179, 270, 401, 443, 803, 896
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	268, 441, 894
Fnu4HI	GCNGC	7 cut(s)	207, 332, 576, 579, 608, 639, 651
FokI	GGATG	1 cut(s)	692
Fsp4HI	GCNGC	7 cut(s)	207, 332, 576, 579, 608, 639, 651
FspBI	CTAG	2 cut(s)	132, 284
GlaI	GCGC	2 cut(s)	277, 884
GluI	GCNGC	7 cut(s)	207, 332, 576, 579, 608, 639, 651
HaeIII	GGCC	3 cut(s)	206, 396, 689
HapII	CCGG	1 cut(s)	823
HhaI	GCGC	2 cut(s)	278, 885
Hin1II	CATG	3 cut(s)	272, 445, 898
Hin6I	GCGC	2 cut(s)	276, 883
HinP1I	GCGC	2 cut(s)	276, 883
HindIII	AAGCTT	1 cut(s)	317
HinfI	GANTC	8 cut(s)	137, 153, 265, 301, 524, 550, 599, 631
HpaII	CCGG	1 cut(s)	823
HphI	GGTGA	3 cut(s)	130, 173, 358
Hpy166II	GTNNAC	4 cut(s)	410, 439, 721, 833
Hpy188I	TCNGA	6 cut(s)	68, 142, 185, 358, 541, 549
Hpy188III	TCNNGA	6 cut(s)	197, 305, 596, 628, 699, 788
Hpy8I	GTNNAC	4 cut(s)	410, 439, 721, 833
HpyAV	CCTTC	3 cut(s)	65, 670, 895
HpyCH4III	ACNGT	2 cut(s)	391, 879
HpyCH4V	TGCA	7 cut(s)	89, 254, 315, 425, 563, 607, 845
HpyF10VI	GCNNNNNNNGC	5 cut(s)	212, 284, 402, 647, 891
HpyF3I	CTNAG	3 cut(s)	182, 538, 813
Hsp92II	CATG	3 cut(s)	272, 445, 898
HspAI	GCGC	2 cut(s)	276, 883
KpnI	GGTACC	1 cut(s)	823
Kzo9I	GATC	3 cut(s)	63, 590, 772
LmnI	GCTCC	5 cut(s)	364, 507, 647, 658, 757
Lsp1109I	GCAGC	6 cut(s)	343, 562, 565, 619, 625, 637
LweI	GCATC	2 cut(s)	118, 550
MaeI	CTAG	2 cut(s)	132, 284
MaeIII	GTNAC	3 cut(s)	7, 118, 600
MalI	GATC	3 cut(s)	65, 592, 774
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	3 cut(s)	63, 590, 772
MboII	GAAGA	3 cut(s)	36, 533, 752
MflI	RGATCY	2 cut(s)	590, 772
MhlI	GDGCHC	1 cut(s)	865
MluCI	AATT	3 cut(s)	20, 384, 621
MlyI	GAGTC	3 cut(s)	162, 559, 608
MnlI	CCTC	5 cut(s)	50, 52, 196, 355, 786
MseI	TTAA	3 cut(s)	375, 666, 869
MspI	CCGG	1 cut(s)	823
MspR9I	CCNGG	4 cut(s)	149, 588, 780, 840
Mva1269I	GAATGC	1 cut(s)	256
MvaI	CCWGG	4 cut(s)	149, 588, 780, 840
MwoI	GCNNNNNNNGC	5 cut(s)	212, 284, 402, 647, 891
NdeII	GATC	3 cut(s)	63, 590, 772
NlaIII	CATG	3 cut(s)	272, 445, 898
NlaIV	GGNNCC	3 cut(s)	759, 768, 821
NmuCI	GTSAC	2 cut(s)	118, 600
NspI	RCATGY	1 cut(s)	898
PaeI	GCATGC	1 cut(s)	898
PaqCI	CACCTGC	2 cut(s)	601, 784
PctI	GAATGC	1 cut(s)	256
PfeI	GAWTC	5 cut(s)	137, 265, 301, 524, 631
PflMI	CCANNNNNTGG	1 cut(s)	511
PkrI	GCNGC	7 cut(s)	208, 333, 577, 580, 609, 640, 652
PleI	GAGTC	3 cut(s)	161, 558, 607
PpsI	GAGTC	3 cut(s)	161, 558, 607
Psp6I	CCWGG	4 cut(s)	147, 586, 778, 838
PspGI	CCWGG	4 cut(s)	147, 586, 778, 838
PspN4I	GGNNCC	3 cut(s)	759, 768, 821
PstI	CTGCAG	1 cut(s)	609
PsuI	RGATCY	2 cut(s)	590, 772
RsaI	GTAC	4 cut(s)	245, 431, 821, 876
RsaNI	GTAC	4 cut(s)	244, 430, 820, 875
SaqAI	TTAA	3 cut(s)	375, 666, 869
SatI	GCNGC	7 cut(s)	207, 332, 576, 579, 608, 639, 651
Sau3AI	GATC	3 cut(s)	63, 590, 772
SchI	GAGTC	3 cut(s)	162, 559, 608
ScrFI	CCNGG	4 cut(s)	149, 588, 780, 840
SduI	GDGCHC	1 cut(s)	865
SetI	ASST	8 cut(s)	115, 231, 321, 336, 423, 615, 652, 798
SfaNI	GCATC	2 cut(s)	118, 550
SfcI	CTRYAG	1 cut(s)	605
SmlI	CTYRAG	1 cut(s)	886
SmoI	CTYRAG	1 cut(s)	886
SphI	GCATGC	1 cut(s)	898
Sse9I	AATT	3 cut(s)	20, 384, 621
SsiI	CCGC	3 cut(s)	207, 367, 764
SspMI	CTAG	2 cut(s)	132, 284
StyD4I	CCNGG	4 cut(s)	147, 586, 778, 838
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	2 cut(s)	391, 879
TaqI	TCGA	2 cut(s)	196, 698
TasI	AATT	3 cut(s)	20, 384, 621
TatI	WGTACW	1 cut(s)	429
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	5 cut(s)	137, 265, 301, 524, 631
Tru1I	TTAA	3 cut(s)	375, 666, 869
Tru9I	TTAA	3 cut(s)	375, 666, 869
TscAI	CASTG	2 cut(s)	412, 609
TseFI	GTSAC	2 cut(s)	118, 600
TseI	GCWGC	6 cut(s)	331, 575, 578, 607, 638, 650
Tsp45I	GTSAC	2 cut(s)	118, 600
TspDTI	ATGAA	2 cut(s)	93, 257
TspRI	CASTG	2 cut(s)	412, 609
Van91I	CCANNNNNTGG	1 cut(s)	511
XceI	RCATGY	1 cut(s)	898
XcmI	CCANNNNNNNNNTGG	2 cut(s)	155, 269
XspI	CTAG	2 cut(s)	132, 284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.